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Volumn 540, Issue 7634, 2016, Pages 539-543

Redefining the invertebrate RNA virosphere

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTOME;

EID: 85002520783     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature20167     Document Type: Article
Times cited : (1168)

References (30)
  • 1
    • 33947593126 scopus 로고    scopus 로고
    • The ancient Virus World and evolution of cells
    • Koonin, E. V., Senkevich, T. G., Dolja, V. V. The ancient Virus World and evolution of cells. Biol. Direct 1, 29 (2006).
    • (2006) Biol. Direct , vol.1 , pp. 29
    • Koonin, E.V.1    Senkevich, T.G.2    Dolja, V.V.3
  • 2
    • 84882928633 scopus 로고    scopus 로고
    • Virus discovery and recent insights into virus diversity in arthropods
    • Junglen, S., Drosten, C. Virus discovery and recent insights into virus diversity in arthropods. Curr. Opin. Microbiol. 16, 507-513 (2013).
    • (2013) Curr. Opin. Microbiol. , vol.16 , pp. 507-513
    • Junglen, S.1    Drosten, C.2
  • 3
    • 84964694285 scopus 로고    scopus 로고
    • Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses
    • Li, C. X., et al. Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. eLife 4, e05378 (2015).
    • (2015) ELife , vol.4 , pp. e05378
    • Li, C.X.1
  • 4
    • 79960372429 scopus 로고    scopus 로고
    • Discovery and initial analysis of novel viral genomes in the soybean cyst nematode
    • Bekal, S., Domier, L. L., Niblack, T. L., Lambert, K. N. Discovery and initial analysis of novel viral genomes in the soybean cyst nematode. J. Gen. Virol. 92, 1870-1879 (2011).
    • (2011) J. Gen. Virol. , vol.92 , pp. 1870-1879
    • Bekal, S.1    Domier, L.L.2    Niblack, T.L.3    Lambert, K.N.4
  • 5
    • 84904906709 scopus 로고    scopus 로고
    • Discovery and evolution of bunyavirids in arctic phantom midges and ancient bunyavirid-like sequences in insect genomes
    • Ballinger, M. J., Bruenn, J. A., Hay, J., Czechowski, D., Taylor, D. J. Discovery and evolution of bunyavirids in arctic phantom midges and ancient bunyavirid-like sequences in insect genomes. J. Virol. 88, 8783-8794 (2014).
    • (2014) J. Virol. , vol.88 , pp. 8783-8794
    • Ballinger, M.J.1    Bruenn, J.A.2    Hay, J.3    Czechowski, D.4    Taylor, D.J.5
  • 6
    • 84899873722 scopus 로고    scopus 로고
    • A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors
    • Qin, X. C., et al. A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors. Proc. Natl Acad. Sci. USA 111, 6744-6749 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 6744-6749
    • Qin, X.C.1
  • 7
    • 84906987221 scopus 로고    scopus 로고
    • Virome analysis of Amblyomma americanum, Dermacentor variabilis, Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses
    • Tokarz, R., et al. Virome analysis of Amblyomma americanum, Dermacentor variabilis, Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses. J. Virol. 88, 11480-11492 (2014).
    • (2014) J. Virol. , vol.88 , pp. 11480-11492
    • Tokarz, R.1
  • 8
    • 84938723471 scopus 로고    scopus 로고
    • The discovery, distribution, evolution of viruses associated with Drosophila melanogaster
    • Webster, C. L., et al. The discovery, distribution, evolution of viruses associated with Drosophila melanogaster. PLoS Biol. 13, e1002210 (2015).
    • (2015) PLoS Biol. , vol.13 , pp. e1002210
    • Webster, C.L.1
  • 9
    • 84954108374 scopus 로고    scopus 로고
    • Divergent viruses discovered in arthropods and vertebrates revise the evolutionary history of the Flaviviridae and related viruses
    • Shi, M., et al. Divergent viruses discovered in arthropods and vertebrates revise the evolutionary history of the Flaviviridae and related viruses. J. Virol. 90, 659-669 (2015).
    • (2015) J. Virol. , vol.90 , pp. 659-669
    • Shi, M.1
  • 11
    • 0025743809 scopus 로고
    • The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses
    • Koonin, E. V. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J. Gen. Virol. 72, 2197-2206 (1991).
    • (1991) J. Gen. Virol. , vol.72 , pp. 2197-2206
    • Koonin, E.V.1
  • 12
    • 84858429240 scopus 로고    scopus 로고
    • Endogenous viruses: Insights into viral evolution and impact on host biology
    • Feschotte, C., Gilbert, C. Endogenous viruses: Insights into viral evolution and impact on host biology. Nat. Rev. Genet. 13, 283-296 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 283-296
    • Feschotte, C.1    Gilbert, C.2
  • 13
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, Protostomia
    • Philippe, H., Lartillot, N., Brinkmann, H. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, Protostomia. Mol. Biol. Evol. 22, 1246-1253 (2005).
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 15
    • 44449124918 scopus 로고    scopus 로고
    • Viral load estimation in asymptomatic honey bee colonies using the quantitative RT-PCR technique
    • Gauthier, L., et al. Viral load estimation in asymptomatic honey bee colonies using the quantitative RT-PCR technique. Apidologie (Celle) 38, 426-435 (2007).
    • (2007) Apidologie (Celle) , vol.38 , pp. 426-435
    • Gauthier, L.1
  • 16
    • 77953815337 scopus 로고    scopus 로고
    • The German bee monitoring project: A long term study to understand periodically high winter losses of honey bee colonies
    • Genersch, E., et al. The German bee monitoring project: A long term study to understand periodically high winter losses of honey bee colonies. Apidologie (Celle) 41, 332-352 (2010).
    • (2010) Apidologie (Celle) , vol.41 , pp. 332-352
    • Genersch, E.1
  • 17
    • 10444235153 scopus 로고    scopus 로고
    • Prevalence and seasonal variations of six bee viruses in Apis mellifera L Varroa destructor mite populations in France
    • Tentcheva, D., et al. Prevalence and seasonal variations of six bee viruses in Apis mellifera L., Varroa destructor mite populations in France. Appl. Environ. Microbiol. 70, 7185-7191 (2004).
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7185-7191
    • Tentcheva, D.1
  • 18
    • 0035844036 scopus 로고    scopus 로고
    • Evolution of cell recognition by viruses
    • Baranowski, E., Ruiz-Jarabo, C. M., Domingo, E. Evolution of cell recognition by viruses. Science 292, 1102-1105 (2001).
    • (2001) Science , vol.292 , pp. 1102-1105
    • Baranowski, E.1    Ruiz-Jarabo, C.M.2    Domingo, E.3
  • 19
  • 20
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • Gray, M. W., Burger, G., Lang, B. F. Mitochondrial evolution. Science 283, 1476-1481 (1999).
    • (1999) Science , vol.283 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 21
    • 0019231684 scopus 로고
    • A theory of modular evolution for bacteriophages
    • Botstein, D. A theory of modular evolution for bacteriophages. Ann. NY Acad. Sci. 354, 484-490 (1980).
    • (1980) Ann. NY Acad. Sci. , vol.354 , pp. 484-490
    • Botstein, D.1
  • 22
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • Suttle, C. A. Viruses in the sea. Nature 437, 356-361 (2005).
    • (2005) Nature , vol.437 , pp. 356-361
    • Suttle, C.A.1
  • 23
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G., et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 24
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 25
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir, H., Robinson, J. T., Mesirov, J. P. Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration. Brief. Bioinform. 14, 178-192 (2013).
    • (2013) Brief. Bioinform. , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 26
    • 77949507153 scopus 로고    scopus 로고
    • RNA-seq gene expression estimation with read mapping uncertainty
    • Li, B., Ruotti, V., Stewart, R. M., Thomson, J. A., Dewey, C. N. RNA-seq gene expression estimation with read mapping uncertainty. Bioinformatics 26, 493-500 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 493-500
    • Li, B.1    Ruotti, V.2    Stewart, R.M.3    Thomson, J.A.4    Dewey, C.N.5
  • 27
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh, K., Standley, D. M. MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Mol. Biol. Evol. 30, 772-780 (2013).
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 28
    • 67650757433 scopus 로고    scopus 로고
    • Trimal: A tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutiérrez, S., Silla-Martínez, J. M., Gabaldón, T. trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25, 1972-1973 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutiérrez, S.1    Silla-Martínez, J.M.2    Gabaldón, T.3
  • 29
    • 79954529507 scopus 로고    scopus 로고
    • Prot Test 3: Fast selection of best-fit models of protein evolution
    • Darriba, D., Taboada, G. L., Doallo, R., Posada, D. ProtTest 3: Fast selection of best-fit models of protein evolution. Bioinformatics 27, 1164-1165 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 30
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., Gascuel, O. A simple, fast, accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003).
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.