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Volumn 7, Issue 1, 2019, Pages

Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: Implications for in vivo dominance of the vaginal microbiota

Author keywords

[No Author keywords available]

Indexed keywords

GALAMUSTINE; GLYCOCONJUGATE; GLYCOGEN; GLYCOSYLTRANSFERASE; RNA 16S; TRANSPOSASE; BACTERIAL PROTEIN;

EID: 85063752251     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-019-0667-9     Document Type: Article
Times cited : (80)

References (52)
  • 2
    • 85048541471 scopus 로고    scopus 로고
    • The vaginal microbiota and its association with human papillomavirus, Chlamydia trachomatis, Neisseria gonorrhoeae and Mycoplasma genitalium infections: A systematic review and meta-analysis
    • Jan
    • Tamarelle J, Thiébaut ACM, de Barbeyrac B, Bébéar C, Ravel J, Delarocque-Astagneau E. The vaginal microbiota and its association with human papillomavirus, Chlamydia trachomatis, Neisseria gonorrhoeae and Mycoplasma genitalium infections: a systematic review and meta-analysis. Clin Microbiol Infect. 2019 Jan;25(1):35-47.
    • (2019) Clin Microbiol Infect. , vol.25 , Issue.1 , pp. 35-47
    • Tamarelle, J.1    Thiébaut, A.C.M.2    De Barbeyrac, B.3    Bébéar, C.4    Ravel, J.5    Delarocque-Astagneau, E.6
  • 6
    • 85015238727 scopus 로고    scopus 로고
    • The cervicovaginal microbiota in women notified for chlamydia trachomatis infection: A case-control study at the Sexually Transmitted Infection Outpatient Clinic in Amsterdam, the Netherlands
    • van der Veer C, Bruisten SM, van der Helm JJ, de Vries HJ, van Houdt R. The cervicovaginal microbiota in women notified for chlamydia trachomatis infection: a case-control study at the Sexually Transmitted Infection Outpatient Clinic in Amsterdam, The Netherlands. Clin Infect Dis. 2017;64(1):24-31.
    • (2017) Clin Infect Dis , vol.64 , Issue.1 , pp. 24-31
    • Van Der Veer, C.1    Bruisten, S.M.2    Van Der Helm, J.J.3    De Vries, H.J.4    Van Houdt, R.5
  • 7
    • 84901014030 scopus 로고    scopus 로고
    • Personalized therapy with probiotics from the host by TripleA
    • 1:CAS:528:DC%2BC2cXntFygt7k%3D
    • Kort R. Personalized therapy with probiotics from the host by TripleA. Trends Biotechnol. 2014;32(6):291-3.
    • (2014) Trends Biotechnol , vol.32 , Issue.6 , pp. 291-293
    • Kort, R.1
  • 9
    • 84961627586 scopus 로고    scopus 로고
    • Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria
    • 1:CAS:528:DC%2BC28XhsVKgt73N
    • Abdelmaksoud AA, Koparde VN, Sheth NU, Serrano MG, Glascock AL, Fettweis JM, Strauss JF 3rd, Buck GA, Jefferson KK. Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria. Microbiology. 2016;162(3):466-75.
    • (2016) Microbiology , vol.162 , Issue.3 , pp. 466-475
    • Abdelmaksoud, A.A.1    Koparde, V.N.2    Sheth, N.U.3    Serrano, M.G.4    Glascock, A.L.5    Fettweis, J.M.6    Strauss, J.F.7    Buck, G.A.8    Jefferson, K.K.9
  • 11
    • 85048212486 scopus 로고    scopus 로고
    • Metatranscriptome analysis of the vaginal microbiota reveals potential mechanisms for protection against metronidazole in bacterial vaginosis
    • Deng ZL, Gottschick C, Bhuju S, Masur C, Abels C, Wagner-Dobler I. Metatranscriptome analysis of the vaginal microbiota reveals potential mechanisms for protection against metronidazole in bacterial vaginosis. mSphere. 2018;3(3):e00262-18.
    • (2018) MSphere , vol.3 , Issue.3 , pp. e00262-e00318
    • Deng, Z.L.1    Gottschick, C.2    Bhuju, S.3    Masur, C.4    Abels, C.5    Wagner-Dobler, I.6
  • 12
    • 33750951673 scopus 로고    scopus 로고
    • Lactobacillus strains isolated from the vaginal microbiota of healthy women inhibit Prevotella bivia and Gardnerella vaginalis in coculture and cell culture
    • 1:CAS:528:DC%2BD28Xht1yltr7I
    • Atassi F, Brassart D, Grob P, Graf F, Servin AL. Lactobacillus strains isolated from the vaginal microbiota of healthy women inhibit Prevotella bivia and Gardnerella vaginalis in coculture and cell culture. FEMS Immunol Med Microbiol. 2006;48(3):424-32.
    • (2006) FEMS Immunol Med Microbiol , vol.48 , Issue.3 , pp. 424-432
    • Atassi, F.1    Brassart, D.2    Grob, P.3    Graf, F.4    Servin, A.L.5
  • 14
    • 84952636499 scopus 로고    scopus 로고
    • Lactobacilli inactivate chlamydia trachomatis through lactic acid but not H2O2
    • Gong Z, Luna Y, Yu P, Fan H. Lactobacilli inactivate chlamydia trachomatis through lactic acid but not H2O2. PLoS One. 2014;9(9):e107758.
    • (2014) PLoS One , vol.9 , Issue.9 , pp. e107758
    • Gong, Z.1    Luna, Y.2    Yu, P.3    Fan, H.4
  • 15
    • 79951583085 scopus 로고    scopus 로고
    • The role of acidification in the inhibition of Neisseria gonorrhoeae by vaginal lactobacilli during anaerobic growth
    • Graver MA, Wade JJ. The role of acidification in the inhibition of Neisseria gonorrhoeae by vaginal lactobacilli during anaerobic growth. Ann Clin Microbiol Antimicrob. 2011;10:8.
    • (2011) Ann Clin Microbiol Antimicrob , vol.10 , pp. 8
    • Graver, M.A.1    Wade, J.J.2
  • 16
    • 84976649911 scopus 로고    scopus 로고
    • Lactobacillus crispatus inhibits the infectivity of Chlamydia trachomatis elementary bodies, in vitro study
    • 1:CAS:528:DC%2BC28XhtFSqt7vP
    • Nardini P, Nahui Palomino RA, Parolin C, Laghi L, Foschi C, Cevenini R, Vitali B, Marangoni A. Lactobacillus crispatus inhibits the infectivity of Chlamydia trachomatis elementary bodies, in vitro study. Sci Rep. 2016;6:29024.
    • (2016) Sci Rep , vol.6 , pp. 29024
    • Nardini, P.1    Nahui Palomino, R.A.2    Parolin, C.3    Laghi, L.4    Foschi, C.5    Cevenini, R.6    Vitali, B.7    Marangoni, A.8
  • 17
    • 84989318634 scopus 로고    scopus 로고
    • Unraveling the dynamics of the human vaginal microbiome
    • 27698617 5045142
    • Nunn KL, Forney LJ. Unraveling the dynamics of the human vaginal microbiome. Yale J Biol Med. 2016;89(3):331-7.
    • (2016) Yale J Biol Med , vol.89 , Issue.3 , pp. 331-337
    • Nunn, K.L.1    Forney, L.J.2
  • 19
    • 85009172894 scopus 로고    scopus 로고
    • Lactobacillus-deficient Cervicovaginal bacterial communities are associated with increased HIV Acquisition in Young South African Women
    • 1:CAS:528:DC%2BC2sXnsVWitg%3D%3D
    • Gosmann C, Anahtar MN, Handley SA, Farcasanu M, Abu-Ali G, Bowman BA, Padavattan N, Desai C, Droit L, Moodley A, et al. Lactobacillus-deficient Cervicovaginal bacterial communities are associated with increased HIV Acquisition in Young South African Women. Immunity. 2017;46(1):29-37.
    • (2017) Immunity , vol.46 , Issue.1 , pp. 29-37
    • Gosmann, C.1    Anahtar, M.N.2    Handley, S.A.3    Farcasanu, M.4    Abu-Ali, G.5    Bowman, B.A.6    Padavattan, N.7    Desai, C.8    Droit, L.9    Moodley, A.10
  • 20
    • 84883387768 scopus 로고    scopus 로고
    • Influence of vaginal bacteria and D- and L-lactic acid isomers on vaginal extracellular matrix metalloproteinase inducer: Implications for protection against upper genital tract infections
    • Witkin SS, Mendes-Soares H, Linhares IM, Jayaram A, Ledger WJ, Forney LJ. Influence of vaginal bacteria and D- and L-lactic acid isomers on vaginal extracellular matrix metalloproteinase inducer: implications for protection against upper genital tract infections. MBio. 2013;4(4):e00460-13.
    • (2013) MBio , vol.4 , Issue.4 , pp. e00460-e00513
    • Witkin, S.S.1    Mendes-Soares, H.2    Linhares, I.M.3    Jayaram, A.4    Ledger, W.J.5    Forney, L.J.6
  • 21
    • 84978532305 scopus 로고    scopus 로고
    • Sugar coating the envelope: Glycoconjugates for microbe-host crosstalk
    • 1:CAS:528:DC%2BC28XhtVGisbjJ
    • Tytgat HLP, de Vos WM. Sugar coating the envelope: glycoconjugates for microbe-host crosstalk. Trends Microbiol. 2016;24(11):853-61.
    • (2016) Trends Microbiol , vol.24 , Issue.11 , pp. 853-861
    • Tytgat, H.L.P.1    De Vos, W.M.2
  • 22
    • 55049125445 scopus 로고    scopus 로고
    • Comparative genomics: The bacterial pan-genome
    • 1:CAS:528:DC%2BD1cXhtlGgsLzF
    • Tettelin H, Riley D, Cattuto C, Medini D. Comparative genomics: the bacterial pan-genome. Curr Opin Microbiol. 2008;11(5):472-7.
    • (2008) Curr Opin Microbiol , vol.11 , Issue.5 , pp. 472-477
    • Tettelin, H.1    Riley, D.2    Cattuto, C.3    Medini, D.4
  • 23
    • 84875270326 scopus 로고    scopus 로고
    • Genome instability in Lactobacillus rhamnosus GG
    • 1:CAS:528:DC%2BC3sXkvVOgurY%3D
    • Sybesma W, Molenaar D, van IW VK, Kort R. Genome instability in Lactobacillus rhamnosus GG. Appl Environ Microbiol. 2013;79(7):2233-9.
    • (2013) Appl Environ Microbiol , vol.79 , Issue.7 , pp. 2233-2239
    • Sybesma, W.1    Molenaar, D.2    Van Iw, V.K.3    Kort, R.4
  • 24
    • 49449087287 scopus 로고    scopus 로고
    • Glycosyltransferases: Structures, functions, and mechanisms
    • 1:CAS:528:DC%2BD1cXos1ekurY%3D
    • Lairson LL, Henrissat B, Davies GJ, Withers SG. Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem. 2008;77:521-55.
    • (2008) Annu Rev Biochem , vol.77 , pp. 521-555
    • Lairson, L.L.1    Henrissat, B.2    Davies, G.J.3    Withers, S.G.4
  • 25
    • 84907220959 scopus 로고    scopus 로고
    • The sweet tooth of bacteria: Common themes in bacterial glycoconjugates
    • 1:CAS:528:DC%2BC2cXitFWnsLrJ
    • Tytgat HL, Lebeer S. The sweet tooth of bacteria: common themes in bacterial glycoconjugates. Microbiol Mol Biol Rev. 2014;78(3):372-417.
    • (2014) Microbiol Mol Biol Rev , vol.78 , Issue.3 , pp. 372-417
    • Tytgat, H.L.1    Lebeer, S.2
  • 26
    • 0026588916 scopus 로고
    • Defined medium simulating genital tract secretions for growth of vaginal microflora
    • 1:STN:280:DyaK383lvFKgtw%3D%3D 1583140 265277
    • Geshnizgani AM, Onderdonk AB. Defined medium simulating genital tract secretions for growth of vaginal microflora. J Clin Microbiol. 1992;30(5):1323-6.
    • (1992) J Clin Microbiol , vol.30 , Issue.5 , pp. 1323-1326
    • Geshnizgani, A.M.1    Onderdonk, A.B.2
  • 29
    • 56849124577 scopus 로고    scopus 로고
    • Functional characterization of a newly identified group B Streptococcus pullulanase eliciting antibodies able to prevent alpha-glucans degradation
    • Santi I, Pezzicoli A, Bosello M, Berti F, Mariani M, Telford JL, Grandi G, Soriani M. Functional characterization of a newly identified group B Streptococcus pullulanase eliciting antibodies able to prevent alpha-glucans degradation. PLoS One. 2008;3(11):e3787.
    • (2008) PLoS One , vol.3 , Issue.11 , pp. e3787
    • Santi, I.1    Pezzicoli, A.2    Bosello, M.3    Berti, F.4    Mariani, M.5    Telford, J.L.6    Grandi, G.7    Soriani, M.8
  • 30
    • 61349091754 scopus 로고    scopus 로고
    • Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron
    • 1:CAS:528:DC%2BD1cXhsFWnsrjF
    • Kitamura M, Okuyama M, Tanzawa F, Mori H, Kitago Y, Watanabe N, Kimura A, Tanaka I, Yao M. Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron. J Biol Chem. 2008;283(52):36328-37.
    • (2008) J Biol Chem , vol.283 , Issue.52 , pp. 36328-36337
    • Kitamura, M.1    Okuyama, M.2    Tanzawa, F.3    Mori, H.4    Kitago, Y.5    Watanabe, N.6    Kimura, A.7    Tanaka, I.8    Yao, M.9
  • 31
    • 0020519953 scopus 로고
    • Alpha-amylase genes (amyR2 and amyE+) from an alpha-amylase-hyperproducing Bacillus subtilis strain: Molecular cloning and nucleotide sequences
    • 1:CAS:528:DyaL2cXhvVGlsg%3D%3D 6413492 215086
    • Yamazaki H, Ohmura K, Nakayama A, Takeichi Y, Otozai K, Yamasaki M, Tamura G, Yamane K. Alpha-amylase genes (amyR2 and amyE+) from an alpha-amylase-hyperproducing Bacillus subtilis strain: molecular cloning and nucleotide sequences. J Bacteriol. 1983;156(1):327-37.
    • (1983) J Bacteriol , vol.156 , Issue.1 , pp. 327-337
    • Yamazaki, H.1    Ohmura, K.2    Nakayama, A.3    Takeichi, Y.4    Otozai, K.5    Yamasaki, M.6    Tamura, G.7    Yamane, K.8
  • 33
    • 85034841913 scopus 로고    scopus 로고
    • Is bacterial vaginosis a disease?
    • 1:CAS:528:DC%2BC2sXhvVKgsLvL
    • Reid G. Is bacterial vaginosis a disease? Appl Microbiol Biotechnol. 2018;102(2):553-8.
    • (2018) Appl Microbiol Biotechnol , vol.102 , Issue.2 , pp. 553-558
    • Reid, G.1
  • 36
    • 84997283923 scopus 로고    scopus 로고
    • Genomic comparisons of Lactobacillus crispatus and Lactobacillus iners reveal potential ecological drivers of community composition in the vagina
    • 1:CAS:528:DC%2BC2sXitlSrs7o%3D
    • France MT, Mendes-Soares H, Forney LJ. Genomic comparisons of Lactobacillus crispatus and Lactobacillus iners reveal potential ecological drivers of community composition in the vagina. Appl Environ Microbiol. 2016;82(24):7063-73.
    • (2016) Appl Environ Microbiol , vol.82 , Issue.24 , pp. 7063-7073
    • France, M.T.1    Mendes-Soares, H.2    Forney, L.J.3
  • 37
    • 84922391824 scopus 로고    scopus 로고
    • Human alpha-amylase present in lower-genital-tract mucosal fluid processes glycogen to support vaginal colonization by lactobacillus
    • 1:CAS:528:DC%2BC28XitVyhtL7M
    • Spear GT, French AL, Gilbert D, Zariffard MR, Mirmonsef P, Sullivan TH, Spear WW, Landay A, Micci S, Lee BH, et al. Human alpha-amylase present in lower-genital-tract mucosal fluid processes glycogen to support vaginal colonization by lactobacillus. J Infect Dis. 2014;210(7):1019-28.
    • (2014) J Infect Dis , vol.210 , Issue.7 , pp. 1019-1028
    • Spear, G.T.1    French, A.L.2    Gilbert, D.3    Zariffard, M.R.4    Mirmonsef, P.5    Sullivan, T.H.6    Spear, W.W.7    Landay, A.8    Micci, S.9    Lee, B.H.10
  • 41
    • 85041993601 scopus 로고    scopus 로고
    • Promising prebiotic candidate established by evaluation of lactitol, lactulose, raffinose, and oligofructose for maintenance of a lactobacillus-dominated vaginal microbiota
    • Collins SL, McMillan A, Seney S, van der Veer C, Kort R, Sumarah MW, Reid G. Promising prebiotic candidate established by evaluation of lactitol, lactulose, raffinose, and oligofructose for maintenance of a lactobacillus-dominated vaginal microbiota. Appl Environ Microbiol. 2018;84(5).
    • (2018) Appl Environ Microbiol. , vol.84 , Issue.5
    • Collins, S.L.1    McMillan, A.2    Seney, S.3    Van Der Veer, C.4    Kort, R.5    Sumarah, M.W.6    Reid, G.7
  • 43
    • 84876266928 scopus 로고    scopus 로고
    • QUAST: Quality assessment tool for genome assemblies
    • 1:CAS:528:DC%2BC3sXlvVKitrw%3D
    • Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics. 2013;29(8):1072-5.
    • (2013) Bioinformatics , vol.29 , Issue.8 , pp. 1072-1075
    • Gurevich, A.1    Saveliev, V.2    Vyahhi, N.3    Tesler, G.4
  • 45
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: Rapid prokaryotic genome annotation
    • 1:CAS:528:DC%2BC2cXhtFCrtLjI
    • Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30(14):2068-9.
    • (2014) Bioinformatics , vol.30 , Issue.14 , pp. 2068-2069
    • Seemann, T.1
  • 49
    • 84969673075 scopus 로고    scopus 로고
    • BPGA- an ultra-fast pan-genome analysis pipeline
    • 1:CAS:528:DC%2BC28XmtFarurk%3D
    • Chaudhari NM, Gupta VK, Dutta C. BPGA- an ultra-fast pan-genome analysis pipeline. Sci Rep. 2016;6:24373.
    • (2016) Sci Rep , vol.6 , pp. 24373
    • Chaudhari, N.M.1    Gupta, V.K.2    Dutta, C.3
  • 50
    • 84861334159 scopus 로고    scopus 로고
    • Comparing thousands of circular genomes using the CGView comparison tool
    • 1:CAS:528:DC%2BC38XhslamurbK
    • Grant JR, Arantes AS, Stothard P. Comparing thousands of circular genomes using the CGView comparison tool. BMC Genomics. 2012;13:202.
    • (2012) BMC Genomics , vol.13 , pp. 202
    • Grant, J.R.1    Arantes, A.S.2    Stothard, P.3
  • 52
    • 84862080765 scopus 로고    scopus 로고
    • Adhesion forces and coaggregation between vaginal staphylococci and lactobacilli
    • 1:CAS:528:DC%2BC38XnvFait7Y%3D
    • Younes JA, van der Mei HC, van den Heuvel E, Busscher HJ, Reid G. Adhesion forces and coaggregation between vaginal staphylococci and lactobacilli. PLoS One. 2012;7(5):e36917.
    • (2012) PLoS One , vol.7 , Issue.5 , pp. e36917
    • Younes, J.A.1    Van Der Mei, H.C.2    Van Den Heuvel, E.3    Busscher, H.J.4    Reid, G.5


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