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Volumn 25, Issue 16, 2009, Pages 2071-2073

Reordering contigs of draft genomes using the Mauve Aligner

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; AUTOMATION; COMPUTER LANGUAGE; COMPUTER PROGRAM; CONTIG MAPPING; GENETIC ALGORITHM; GENETIC DATABASE; GENOME; GENOME ANALYSIS; PREDICTION; PRIORITY JOURNAL;

EID: 68549115571     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp356     Document Type: Article
Times cited : (454)

References (13)
  • 1
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner,F.R. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science, 277, 1453-1474.
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1
  • 2
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling,A.C. et al. (2004) Mauve: Multiple alignment of conserved genomic sequence with rearrangements. Genome Res., 14, 1394-1403.
    • (2004) Genome Res , vol.14 , pp. 1394-1403
    • Darling, A.C.1
  • 3
    • 0036330894 scopus 로고    scopus 로고
    • Genome sequence of Yersinia pestis KIM
    • Deng,W. et al. (2002) Genome sequence of Yersinia pestis KIM. J. Bacteriol., 184, 4601-4611.
    • (2002) J. Bacteriol , vol.184 , pp. 4601-4611
    • Deng, W.1
  • 4
    • 33644877924 scopus 로고    scopus 로고
    • ASAP: A resource for annotating, curating, comparing, and disseminating genomic data
    • Glasner,J.D. et al. (2006) ASAP: A resource for annotating, curating, comparing, and disseminating genomic data. Nucleic Acids Res., 34, D41-D45.
    • (2006) Nucleic Acids Res , vol.34
    • Glasner, J.D.1
  • 5
    • 38549117800 scopus 로고    scopus 로고
    • Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteria
    • Glasner,J.D. et al. (2008a) Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Res., 36, D519-D523.
    • (2008) Nucleic Acids Res , vol.36
    • Glasner, J.D.1
  • 6
    • 57149083870 scopus 로고    scopus 로고
    • Niche-specificity and the variable fraction of the Pectobacterium Pan-Genome
    • Glasner,J.D. et al. (2008b) Niche-specificity and the variable fraction of the Pectobacterium Pan-Genome. Mol. Plant-Microbe Interact., 21, 1549-1560.
    • (2008) Mol. Plant-Microbe Interact , vol.21 , pp. 1549-1560
    • Glasner, J.D.1
  • 7
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • Hayashi,T. et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res., 8, 11-22.
    • (2001) DNA Res , vol.8 , pp. 11-22
    • Hayashi, T.1
  • 8
    • 0035807385 scopus 로고    scopus 로고
    • Genome sequence of Yersinia pestis the causative agent of plague
    • Parkhill,J. et al. (2001) Genome sequence of Yersinia pestis the causative agent of plague. Nature, 413, 523-527.
    • (2001) Nature , vol.413 , pp. 523-527
    • Parkhill, J.1
  • 9
    • 0035945586 scopus 로고    scopus 로고
    • Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
    • Perna,N.T. et al. (2001) Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature, 409, 529-533.
    • (2001) Nature , vol.409 , pp. 529-533
    • Perna, N.T.1
  • 10
    • 34547852218 scopus 로고    scopus 로고
    • OSLay: Optimal syntenic layout of unfinished assemblies
    • Richter,D.C. et al. (2007) OSLay: Optimal syntenic layout of unfinished assemblies. Bioinformatics, 23, 1573-1579.
    • (2007) Bioinformatics , vol.23 , pp. 1573-1579
    • Richter, D.C.1
  • 11
    • 3342994863 scopus 로고    scopus 로고
    • Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors
    • Toth,I.K. et al. (2004) Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. Proc. Natl Acad. Sci. USA, 101, 11105-11110.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 11105-11110
    • Toth, I.K.1
  • 12
    • 35348943712 scopus 로고    scopus 로고
    • A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis
    • Touchman,J.W. et al. (2007) A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. PLoS ONE, 2, e220.
    • (2007) PLoS ONE , vol.2
    • Touchman, J.W.1
  • 13
    • 23144442407 scopus 로고    scopus 로고
    • Projector 2: Contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
    • van Hijum,S.A. et al. (2005) Projector 2: Contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res., 33, W560-W566.
    • (2005) Nucleic Acids Res , vol.33
    • van Hijum, S.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.