-
1
-
-
84976871517
-
Reclassifcation of clostridium diffcile as clostridioides diffcile (Hall and O'toole 1935) Prévot 1938
-
Lawson PA, Citron DM, Tyrrell KL, et al. Reclassifcation of clostridium diffcile as clostridioides diffcile (Hall and O'toole 1935) Prévot 1938. Anaerobe 2016;40:95-9.
-
(2016)
Anaerobe
, vol.40
, pp. 95-99
-
-
Lawson, P.A.1
Citron, D.M.2
Tyrrell, K.L.3
-
2
-
-
85026636209
-
Increasing incidence of Multiply recurrent clostridium diffcile infection in the United States: A cohort Study
-
Ma GK, Brensinger CM, Wu Q, et al. Increasing incidence of Multiply recurrent clostridium diffcile infection in the United States: a cohort Study. Ann Intern Med 2017;167:152-8.
-
(2017)
Ann Intern Med
, vol.167
, pp. 152-158
-
-
Ma, G.K.1
Brensinger, C.M.2
Wu, Q.3
-
3
-
-
85040607210
-
Comparative epidemiology of clostridium diffcile infection: England and the USA
-
King A, Mullish BH, Williams HRT, et al. Comparative epidemiology of clostridium diffcile infection: england and the USa. Int J Qual Health Care 2017;29:785-91.
-
(2017)
Int J Qual Health Care
, vol.29
, pp. 785-791
-
-
King, A.1
Mullish, B.H.2
Williams, H.R.T.3
-
4
-
-
85052904982
-
The use of faecal microbiota transplant as treatment for recurrent or refractory Clostridium diffcile infection and other potential indications: Joint British Society of gastroenterology (BSg) and Healthcare infection Society (HiS) guidelines
-
Mullish BH, Quraishi MN, Segal J P, et al. The use of faecal microbiota transplant as treatment for recurrent or refractory Clostridium diffcile infection and other potential indications: joint British Society of gastroenterology (BSg) and Healthcare infection Society (HiS) guidelines. Gut 2018;67:1920-41.
-
(2018)
Gut
, vol.67
, pp. 1920-1941
-
-
Mullish, B.H.1
Quraishi, M.N.2
Segal, J.P.3
-
5
-
-
84857640098
-
Fecal transplantation, through colonoscopy, is effective therapy for recurrent Clostridium diffcile infection
-
Mattila E, Uusitalo-Seppälä R, Wuorela M, et al. Fecal transplantation, through colonoscopy, is effective therapy for recurrent Clostridium diffcile infection. Gastroenterology 2012;142:490-6.
-
(2012)
Gastroenterology
, vol.142
, pp. 490-496
-
-
Mattila, E.1
Uusitalo-Seppälä, R.2
Wuorela, M.3
-
6
-
-
84952815281
-
Obstacles to establishing an nHS faecal transplant programme
-
Mullish BH, Williams HR. Obstacles to establishing an nHS faecal transplant programme. BMJ 2015;351:h6043.
-
(2015)
BMJ
, vol.351
, pp. h6043
-
-
Mullish, B.H.1
Williams, H.R.2
-
7
-
-
85014315210
-
Effcacy of sterile fecal fltrate transfer for treating patients with clostridium diffcile infection
-
Ott SJ, Waetzig GH, Rehman A, et al. Effcacy of sterile fecal fltrate transfer for treating patients with clostridium diffcile infection. Gastroenterology 2017;152:799-811.
-
(2017)
Gastroenterology
, vol.152
, pp. 799-811
-
-
Ott, S.J.1
Waetzig, G.H.2
Rehman, A.3
-
8
-
-
85055768814
-
Inhibiting growth of Clostridioides diffcile by restoring valerate, produced by the intestinal microbiota
-
Mcdonald JAK, Mullish BH, Pechlivanis A, et al. Inhibiting growth of Clostridioides diffcile by restoring valerate, produced by the intestinal microbiota. Gastroenterology 2018;155:1495-507.
-
(2018)
Gastroenterology
, vol.155
, pp. 1495-1507
-
-
McDonald, J.A.K.1
Mullish, B.H.2
Pechlivanis, A.3
-
9
-
-
85026308810
-
Bacteriophage transfer during faecal microbiota transplantation in Clostridium diffcile infection is associated with treatment outcome
-
Zuo T, Wong SH, Lam K, et al. Bacteriophage transfer during faecal microbiota transplantation in Clostridium diffcile infection is associated with treatment outcome. Gut 2018;67:634-43.
-
(2018)
Gut
, vol.67
, pp. 634-643
-
-
Zuo, T.1
Wong, S.H.2
Lam, K.3
-
10
-
-
85058316436
-
Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation
-
Draper LA, Ryan FJ, Smith MK, et al. Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation. Microbiome 2018;6:220.
-
(2018)
Microbiome
, vol.6
, pp. 220
-
-
Draper, L.A.1
Ryan, F.J.2
Smith, M.K.3
-
11
-
-
41549142775
-
Bile salts and glycine as cogerminants for clostridium diffcile spores
-
Sorg JA, Sonenshein AL. Bile salts and glycine as cogerminants for clostridium diffcile spores. J Bacteriol 2008;190:2505-12.
-
(2008)
J Bacteriol
, vol.190
, pp. 2505-2512
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
12
-
-
85015286846
-
Inhibition of spore germination, growth, and toxin activity of clinically relevant C. diffcile strains by gut microbiota derived secondary bile acids
-
Thanissery R, Winston JA, Theriot CM. Inhibition of spore germination, growth, and toxin activity of clinically relevant C. diffcile strains by gut microbiota derived secondary bile acids. Anaerobe 2017;45:86-100.
-
(2017)
Anaerobe
, vol.45
, pp. 86-100
-
-
Thanissery, R.1
Winston, J.A.2
Theriot, C.M.3
-
13
-
-
51649086648
-
Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome
-
Jones B V, Begley M, Hill C, et al. Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome. Proc Natl Acad Sci USA 2008;105:13580-5.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13580-13585
-
-
Jones, B.V.1
Begley, M.2
Hill, C.3
-
14
-
-
84963891450
-
Recurrent clostridium diffcile infection associates with distinct bile acid and microbiome profles
-
Allegretti JR, Kearney S, Li N, et al. Recurrent clostridium diffcile infection associates with distinct bile acid and microbiome profles. Aliment Pharmacol Ther 2016;43:1142-53.
-
(2016)
Aliment Pharmacol Ther
, vol.43
, pp. 1142-1153
-
-
Allegretti, J.R.1
Kearney, S.2
Li, N.3
-
15
-
-
85072360793
-
Effect of Oral capsule-vs colonoscopy-Delivered Fecal Microbiota transplantation on recurrent Clostridium diffcile infection
-
Kao D, Roach B, Silva M, et al. Effect of Oral capsule-vs colonoscopy-Delivered Fecal Microbiota transplantation on recurrent Clostridium diffcile infection. JAMA 1985;2017:318.
-
(1985)
JAMA
, vol.2017
, pp. 318
-
-
Kao, D.1
Roach, B.2
Silva, M.3
-
16
-
-
84931295496
-
Update on Fecal Microbiota transplantation 2015: Indications, Methodologies, Mechanisms, and Outlook
-
Kelly CR, Kahn S, Kashyap P, et al. Update on Fecal Microbiota transplantation 2015: indications, Methodologies, Mechanisms, and Outlook. Gastroenterology 2015;149:223-37.
-
(2015)
Gastroenterology
, vol.149
, pp. 223-237
-
-
Kelly, C.R.1
Kahn, S.2
Kashyap, P.3
-
17
-
-
85046371831
-
Functional microbiomics: Evaluation of gut microbiota-bile acid metabolism interactions in health and disease
-
Mullish BH, Pechlivanis A, Barker G F, et al. Functional microbiomics: evaluation of gut microbiota-bile acid metabolism interactions in health and disease. Methods 2018;149:49-58.
-
(2018)
Methods
, vol.149
, pp. 49-58
-
-
Mullish, B.H.1
Pechlivanis, A.2
Barker, G.F.3
-
18
-
-
85072350399
-
-
Illumina. 16S Metagenomic Sequencing library Preparation, (accessed 27 nov 2017)
-
Illumina. 16S Metagenomic Sequencing library Preparation. https://support. illumina. com/downloads/16s_metagenomic_sequencing_library_preparation.html (accessed 27 nov 2017).
-
-
-
-
19
-
-
84994638542
-
Piphillin: Improved prediction of metagenomic content by direct inference from human microbiomes
-
Iwai S, Weinmaier T, Schmidt BL, et al. Piphillin: improved prediction of metagenomic content by direct inference from human microbiomes. PLoS One 2016;11:e0166104.
-
(2016)
PLoS One
, vol.11
, pp. e0166104
-
-
Iwai, S.1
Weinmaier, T.2
Schmidt, B.L.3
-
20
-
-
84942902349
-
Bile acid profling and quantifcation in biofuids using ultra-performance liquid chromatography tandem mass spectrometry
-
Sarafan MH, Lewis MR, Pechlivanis A, et al. Bile acid profling and quantifcation in biofuids using ultra-performance liquid chromatography tandem mass spectrometry. Anal Chem 2015;87:9662-70.
-
(2015)
Anal Chem
, vol.87
, pp. 9662-9670
-
-
Sarafan, M.H.1
Lewis, M.R.2
Pechlivanis, A.3
-
21
-
-
0037403187
-
Development and application of a polymerase chain reaction assay for the detection and enumeration of bile acid 7alpha-dehydroxylating bacteria in human feces
-
Wells JE, Williams KB, Whitehead TR, et al. Development and application of a polymerase chain reaction assay for the detection and enumeration of bile acid 7alpha-dehydroxylating bacteria in human feces. Clin Chim Acta 2003;331:127-34.
-
(2003)
Clin Chim Acta
, vol.331
, pp. 127-134
-
-
Wells, J.E.1
Williams, K.B.2
Whitehead, T.R.3
-
22
-
-
0028147437
-
Lactobacillus strain gg supplementation decreases colonic hydrolytic and reductive enzyme activities in healthy female adults
-
Ling WH, Korpela R, Mykkänen H, et al. Lactobacillus strain gg supplementation decreases colonic hydrolytic and reductive enzyme activities in healthy female adults. J Nutr 1994;124:18-23.
-
(1994)
J Nutr
, vol.124
, pp. 18-23
-
-
Ling, W.H.1
Korpela, R.2
Mykkänen, H.3
-
23
-
-
0034048222
-
Bile salt hydrolase of Bifdobacterium longum-biochemical and genetic characterization
-
Tanaka H, Hashiba H, Kok J, et al. Bile salt hydrolase of Bifdobacterium longum-biochemical and genetic characterization. Appl Environ Microbiol 2000;66:2502-12.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2502-2512
-
-
Tanaka, H.1
Hashiba, H.2
Kok, J.3
-
24
-
-
84897621880
-
Discovery of bile salt hydrolase inhibitors using an effcient high-throughput screening system
-
Smith K, Zeng X, Lin J, et al. Discovery of bile salt hydrolase inhibitors using an effcient high-throughput screening system. PLoS One 2014;9:e85344.
-
(2014)
PLoS One
, vol.9
, pp. e85344
-
-
Smith, K.1
Zeng, X.2
Lin, J.3
-
25
-
-
84901020405
-
Regulation of host weight gain and lipid metabolism by bacterial bile acid modifcation in the gut
-
Joyce SA, MacSharry J, Casey PG, et al. Regulation of host weight gain and lipid metabolism by bacterial bile acid modifcation in the gut. Proc Natl Acad Sci USA 2014;111:7421-6.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 7421-7426
-
-
Joyce, S.A.1
MacSharry, J.2
Casey, P.G.3
-
26
-
-
84944474480
-
Fecal microbiota transplantation eliminates clostridium diffcile in a Murine model of relapsing disease
-
Seekatz AM, Theriot CM, Molloy C T, et al. Fecal microbiota transplantation eliminates clostridium diffcile in a Murine model of relapsing disease. Infect Immun 2015;83:3838-46.
-
(2015)
Infect Immun
, vol.83
, pp. 3838-3846
-
-
Seekatz, A.M.1
Theriot, C.M.2
Molloy, C.T.3
-
27
-
-
0034034841
-
Assignment of eubacterium SP. Vpi 12708 and related strains with high bile acid 7alpha-dehydroxylating activity to clostridium scindens and proposal of clostridium hylemonae SP. Nov., isolated from human faeces
-
Kitahara M, Takamine F, Imamura T, et al. Assignment of eubacterium SP. Vpi 12708 and related strains with high bile acid 7alpha-dehydroxylating activity to clostridium scindens and proposal of clostridium hylemonae SP. Nov., isolated from human faeces. Int J Syst Evol Microbiol 2000;50:971-8.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 971-978
-
-
Kitahara, M.1
Takamine, F.2
Imamura, T.3
-
28
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
Ridlon JM, Kang DJ, Hylemon PB. Bile salt biotransformations by human intestinal bacteria. J Lipid Res 2006;47:241-59.
-
(2006)
J Lipid Res
, vol.47
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.J.2
Hylemon, P.B.3
-
29
-
-
38849090693
-
Clostridium scindens baicD and baiH genes encode stereo-specifc 7alpha/7beta-hydroxy-3-oxo-delta4-cholenoic acid oxidoreductases
-
Kang DJ, Ridlon JM, Moore DR, et al. Clostridium scindens baicD and baiH genes encode stereo-specifc 7alpha/7beta-hydroxy-3-oxo-delta4-cholenoic acid oxidoreductases. Biochim Biophys Acta 2008;1781:16-25.
-
(2008)
Biochim Biophys Acta
, vol.1781
, pp. 16-25
-
-
Kang, D.J.1
Ridlon, J.M.2
Moore, D.R.3
-
30
-
-
77957337708
-
Inhibiting the initiation of clostridium diffcile spore germination using analogs of chenodeoxycholic acid, a bile acid
-
Sorg JA, Sonenshein AL. Inhibiting the initiation of clostridium diffcile spore germination using analogs of chenodeoxycholic acid, a bile acid. J Bacteriol 2010;192:4983-90.
-
(2010)
J Bacteriol
, vol.192
, pp. 4983-4990
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
31
-
-
84857472906
-
Spores of clostridium diffcile clinical isolates display a diverse germination response to bile salts
-
Heeg D, Burns DA, Cartman S T, et al. Spores of clostridium diffcile clinical isolates display a diverse germination response to bile salts. PLoS One 2012;7:e32381.
-
(2012)
PLoS One
, vol.7
, pp. e32381
-
-
Heeg, D.1
Burns, D.A.2
Cartman, S.T.3
-
32
-
-
0020554353
-
Effciency of various bile salt preparations for stimulation of clostridium diffcile spore germination
-
Wilson KH. effciency of various bile salt preparations for stimulation of clostridium diffcile spore germination. J Clin Microbiol 1983;18:1017-19.
-
(1983)
J Clin Microbiol
, vol.18
, pp. 1017-1019
-
-
Wilson, K.H.1
-
33
-
-
84878518519
-
Bile acid recognition by the clostridium diffcile germinant receptor, cspc, is important for establishing infection
-
Francis MB, Allen CA, Shrestha R, et al. Bile acid recognition by the clostridium diffcile germinant receptor, cspc, is important for establishing infection. PLoS Pathog 2013;9:e1003356.
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003356
-
-
Francis, M.B.1
Allen, C.A.2
Shrestha, R.3
-
34
-
-
85064142969
-
Effective fecal microbiota transplantation for recurrent clostridioides diffcile infection in humans is associated with increased signalling in the bile acid-farnesoid X receptor-fbroblast growth factor pathway
-
Monaghan T, Mullish BH, Patterson J, et al. Effective fecal microbiota transplantation for recurrent clostridioides diffcile infection in humans is associated with increased signalling in the bile acid-farnesoid X receptor-fbroblast growth factor pathway. Gut Microbes 2018;1:1-7.
-
(2018)
Gut Microbes
, vol.1
, pp. 1-7
-
-
Monaghan, T.1
Mullish, B.H.2
Patterson, J.3
-
35
-
-
85057564693
-
Fxr-Dependent Modulation of the Human Small intestinal Microbiome by the Bile acid Derivative Obeticholic acid
-
Friedman ES, Li Y, Shen TD, et al. Fxr-Dependent Modulation of the Human Small intestinal Microbiome by the Bile acid Derivative Obeticholic acid. Gastroenterology 2018;155:1741-52.
-
(2018)
Gastroenterology
, vol.155
, pp. 1741-1752
-
-
Friedman, E.S.1
Li, Y.2
Shen, T.D.3
-
36
-
-
79952749979
-
Systemic gut microbial modulation of bile acid metabolism in host tissue compartments
-
Swann JR, Want EJ, Geier FM, et al. Systemic gut microbial modulation of bile acid metabolism in host tissue compartments. Proc Natl Acad Sci USA 2011;108:4523-30.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4523-4530
-
-
Swann, J.R.1
Want, E.J.2
Geier, F.M.3
-
37
-
-
84892894991
-
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to clostridium diffcile infection
-
Theriot CM, Koenigsknecht MJ, Carlson PE, et al. Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to clostridium diffcile infection. Nat Commun 2014;5:ncomms4114.
-
(2014)
Nat Commun
, vol.5
, pp. ncomms4114
-
-
Theriot, C.M.1
Koenigsknecht, M.J.2
Carlson, P.E.3
-
38
-
-
84964280002
-
Antibiotic-induced alterations of the gut Microbiota alter Secondary Bile acid Production and allow for Clostridium diffcile Spore germination and Outgrowth in the large intestine
-
Theriot CM, Bowman AA, Young VB. antibiotic-induced alterations of the gut Microbiota alter Secondary Bile acid Production and allow for Clostridium diffcile Spore germination and Outgrowth in the large intestine. mSphere 2016;1.
-
(2016)
MSphere
, vol.1
-
-
Theriot, C.M.1
Bowman, A.A.2
Young, V.B.3
-
39
-
-
84894105226
-
Microbiota transplantation restores normal fecal bile acid composition in recurrent clostridium diffcile infection
-
Weingarden AR, Chen C, Bobr A, et al. Microbiota transplantation restores normal fecal bile acid composition in recurrent clostridium diffcile infection. Am J Physiol Gastrointest Liver Physiol 2014;306:g310-9.
-
(2014)
Am J Physiol Gastrointest Liver Physiol
, vol.306
, pp. g310-g319
-
-
Weingarden, A.R.1
Chen, C.2
Bobr, A.3
-
40
-
-
85052602534
-
Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for clostridioides diffcile infection
-
Brown JR, Flemer B, Joyce SA, et al. Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for clostridioides diffcile infection. BMC Gastroenterol 2018;18:131.
-
(2018)
BMC Gastroenterol
, vol.18
, pp. 131
-
-
Brown, J.R.1
Flemer, B.2
Joyce, S.A.3
-
41
-
-
84958576368
-
Changes in colonic Bile acid composition following Fecal Microbiota transplantation are Suffcient to control clostridium diffcile germination and growth
-
Weingarden AR, Dosa PI, DeWinter E, et al. Changes in colonic Bile acid composition following Fecal Microbiota transplantation are Suffcient to control clostridium diffcile germination and growth. PLoS One 2016;11:e0147210.
-
(2016)
PLoS One
, vol.11
, pp. e0147210
-
-
Weingarden, A.R.1
Dosa, P.I.2
DeWinter, E.3
-
42
-
-
84925500413
-
Precision microbiome reconstitution restores bile acid mediated resistance to clostridium diffcile
-
Buffe CG, Bucci V, Stein RR, et al. Precision microbiome reconstitution restores bile acid mediated resistance to clostridium diffcile. Nature 2015;517:205-8.
-
(2015)
Nature
, vol.517
, pp. 205-208
-
-
Buffe, C.G.1
Bucci, V.2
Stein, R.R.3
-
43
-
-
85009754141
-
Functional intestinal Bile acid 7α-Dehydroxylation by Clostridium scindens associated with Protection from Clostridium diffcile infection in a gnotobiotic Mouse Model
-
Studer N, Desharnais L, Beutler M, et al. Functional intestinal Bile acid 7α-Dehydroxylation by Clostridium scindens associated with Protection from Clostridium diffcile infection in a gnotobiotic Mouse Model. Front Cell Infect Microbiol 2016;6:191.
-
(2016)
Front Cell Infect Microbiol
, vol.6
, pp. 191
-
-
Studer, N.1
Desharnais, L.2
Beutler, M.3
-
44
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defned bacteriotherapy resolves relapsing clostridium diffcile disease in mice
-
Lawley TD, Clare S, Walker AW, et al. Targeted restoration of the intestinal microbiota with a simple, defned bacteriotherapy resolves relapsing clostridium diffcile disease in mice. PLoS Pathog 2012;8:e1002995.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002995
-
-
Lawley, T.D.1
Clare, S.2
Walker, A.W.3
-
45
-
-
85046658322
-
Baicd gene cluster abundance is negatively correlated with clostridium diffcile infection
-
Solbach P, Chhatwal P, Woltemate S, et al. Baicd gene cluster abundance is negatively correlated with clostridium diffcile infection. PLoS One 2018;13:e0196977.
-
(2018)
PLoS One
, vol.13
, pp. e0196977
-
-
Solbach, P.1
Chhatwal, P.2
Woltemate, S.3
-
46
-
-
85046288807
-
Clostridium scindens is Present in the gut Microbiota during clostridium diffcile infection: A Metagenomic and culturomic analysis
-
Amrane S, Bachar D, Lagier JC, et al. Clostridium scindens is Present in the gut Microbiota during clostridium diffcile infection: a Metagenomic and culturomic analysis. J Clin Microbiol 2018;56:e01663-17.
-
(2018)
J Clin Microbiol
, vol.56
, pp. e01663-e01717
-
-
Amrane, S.1
Bachar, D.2
Lagier, J.C.3
-
47
-
-
84905027614
-
Reset of a critically disturbed microbial ecosystem: Faecal transplant in recurrent clostridium diffcile infection
-
Fuentes S, Van nood E, Tims S, et al. Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent clostridium diffcile infection. ISME J 2014;8:1621-33.
-
(2014)
ISME J
, vol.8
, pp. 1621-1633
-
-
Fuentes, S.1
Van Nood, E.2
Tims, S.3
-
48
-
-
84991020825
-
Long-term effects on luminal and mucosal microbiota and commonly acquired taxa in faecal microbiota transplantation for recurrent clostridium diffcile infection
-
Jalanka J, Mattila E, Jouhten H, et al. Long-term effects on luminal and mucosal microbiota and commonly acquired taxa in faecal microbiota transplantation for recurrent clostridium diffcile infection. BMC Med 2016;14:155.
-
(2016)
BMC Med
, vol.14
, pp. 155
-
-
Jalanka, J.1
Mattila, E.2
Jouhten, H.3
|