-
1
-
-
84938286013
-
Mucosal immune development in early life: setting the stage
-
Brugman S, Perdijk O, van Neerven RJJ, Savelkoul HFJ. Mucosal immune development in early life: setting the stage. Arch Immunol Ther Exp. 2015;63(4):251–268.
-
(2015)
Arch Immunol Ther Exp
, vol.63
, Issue.4
, pp. 251-268
-
-
Brugman, S.1
Perdijk, O.2
van Neerven, R.J.J.3
Savelkoul, H.F.J.4
-
2
-
-
84897483551
-
Meconium microbiome analysis identifies bacteria correlated with premature birth
-
Ardissone AN, de la Cruz DM, Davis-Richardson AG. Meconium microbiome analysis identifies bacteria correlated with premature birth. PLoS One. 2014;9(3):e90784.
-
(2014)
PLoS One
, vol.9
, Issue.3
, pp. e90784
-
-
Ardissone, A.N.1
de la Cruz, D.M.2
Davis-Richardson, A.G.3
-
3
-
-
84901358163
-
The placenta harbors a unique microbiome
-
Aagaard K, Ma J, Antony KM, Ganu R, Petrosino J, Versalovic J. The placenta harbors a unique microbiome. Sci Transl Med. 2014;6(237):237ra65.
-
(2014)
Sci Transl Med
, vol.6
, Issue.237
, pp. 237ra65
-
-
Aagaard, K.1
Ma, J.2
Antony, K.M.3
Ganu, R.4
Petrosino, J.5
Versalovic, J.6
-
4
-
-
84883186674
-
Mom knows best: the universality of maternal microbial transmission
-
Funkhouser LJ, Bordenstein SR. Mom knows best: the universality of maternal microbial transmission. PLoS Biol. 2013;11(8):1–9.
-
(2013)
PLoS Biol
, vol.11
, Issue.8
, pp. 1-9
-
-
Funkhouser, L.J.1
Bordenstein, S.R.2
-
5
-
-
26444484367
-
Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section
-
Jiménez E, Fernández L, Marín ML. Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section. Curr Microbiol. 2005;51(4):270–274.
-
(2005)
Curr Microbiol
, vol.51
, Issue.4
, pp. 270-274
-
-
Jiménez, E.1
Fernández, L.2
Marín, M.L.3
-
6
-
-
84961620579
-
Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid
-
Collado MC, Rautava S, Aakko J, Isolauri E, Salminen S. Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid. Sci Rep. 2016;6:23129.
-
(2016)
Sci Rep
, vol.6
, pp. 23129
-
-
Collado, M.C.1
Rautava, S.2
Aakko, J.3
Isolauri, E.4
Salminen, S.5
-
7
-
-
84962524929
-
The placental membrane microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis
-
(,):627., –,.e16
-
Prince AL, Ma J, Kannan PS. The placental membrane microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis. Am J Obstet Gynecol. 2016;214(5):627.e1–627.e16.
-
(2016)
Am J Obstet Gynecol
, vol.214
, Issue.5
, pp. e1-e627
-
-
Prince, A.L.1
Ma, J.2
Kannan, P.S.3
-
8
-
-
41949094718
-
Is meconium from healthy newborns actually sterile?
-
Jiménez E, Marín ML, Martín R. Is meconium from healthy newborns actually sterile? Res Microbiol. 2008;159(3):187–193.
-
(2008)
Res Microbiol
, vol.159
, Issue.3
, pp. 187-193
-
-
Jiménez, E.1
Marín, M.L.2
Martín, R.3
-
9
-
-
77953287049
-
Thrombosis of the umbilical vessels revisited. An observational study of 317 consecutive autopsies at a single institution
-
Avagliano L, Marconi AM, Candiani M, Barbera A, Bulfamante G. Thrombosis of the umbilical vessels revisited. An observational study of 317 consecutive autopsies at a single institution. Hum Pathol. 2010;41(7):971–979.
-
(2010)
Hum Pathol
, vol.41
, Issue.7
, pp. 971-979
-
-
Avagliano, L.1
Marconi, A.M.2
Candiani, M.3
Barbera, A.4
Bulfamante, G.5
-
10
-
-
84897138296
-
Role of the microbiota in immunity and inflammation
-
Belkaid Y, Hand TW. Role of the microbiota in immunity and inflammation. Cell. 2014;157(1):121–141.
-
(2014)
Cell
, vol.157
, Issue.1
, pp. 121-141
-
-
Belkaid, Y.1
Hand, T.W.2
-
11
-
-
77950251508
-
Transmission of diverse oral bacteria to murine placenta: evidence for the oral microbiome as a potential source of intrauterine infection
-
Fardini Y, Chung P, Dumm R, Joshi N, Han YW. Transmission of diverse oral bacteria to murine placenta: evidence for the oral microbiome as a potential source of intrauterine infection. Infect Immun. 2010;78(4):1789–1796.
-
(2010)
Infect Immun
, vol.78
, Issue.4
, pp. 1789-1796
-
-
Fardini, Y.1
Chung, P.2
Dumm, R.3
Joshi, N.4
Han, Y.W.5
-
12
-
-
85022198188
-
A critical assessment of the ‘sterile womb’ and ‘in utero colonization’ hypotheses: implications for research on the pioneer infant microbiome
-
Perez-Muñoz ME, Arrieta MC, Ramer-Tait AE, Walter J. A critical assessment of the ‘sterile womb’ and ‘in utero colonization’ hypotheses: implications for research on the pioneer infant microbiome. Microbiome. 2017;5(1):48.
-
(2017)
Microbiome
, vol.5
, Issue.1
, pp. 48
-
-
Perez-Muñoz, M.E.1
Arrieta, M.C.2
Ramer-Tait, A.E.3
Walter, J.4
-
13
-
-
85010902656
-
Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery
-
Chu DM, Ma J, Prince AL, Antony KM, Seferovic MD, Aagaard KM. Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery. Nat Med. 2017;23(3):314–326.
-
(2017)
Nat Med
, vol.23
, Issue.3
, pp. 314-326
-
-
Chu, D.M.1
Ma, J.2
Prince, A.L.3
Antony, K.M.4
Seferovic, M.D.5
Aagaard, K.M.6
-
14
-
-
84862276328
-
Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome
-
Huttenhower C,; Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207–214.
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 207-214
-
-
Huttenhower, C.1
-
15
-
-
85044555332
-
A human gut microbial gene catalogue established by metagenomic sequencing: commentary
-
Qin J, Li R, Raes J. A human gut microbial gene catalogue established by metagenomic sequencing: commentary. Nature. 2010;11:28.
-
(2010)
Nature
, vol.11
, pp. 28
-
-
Qin, J.1
Li, R.2
Raes, J.3
-
16
-
-
84977609504
-
The human gut microbiome in health: establishment and resilience of microbiota over a lifetime
-
Greenhalgh K, Meyer KM, Aagaard KM, Wilmes P. The human gut microbiome in health: establishment and resilience of microbiota over a lifetime. Environ Microbiol. 2016;18(7):2103–2116.
-
(2016)
Environ Microbiol
, vol.18
, Issue.7
, pp. 2103-2116
-
-
Greenhalgh, K.1
Meyer, K.M.2
Aagaard, K.M.3
Wilmes, P.4
-
17
-
-
84994518882
-
Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations
-
Riva A, Borgo F, Lassandro C. Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations. Environ Microbiol. 2016;19(1):1–29.
-
(2016)
Environ Microbiol
, vol.19
, Issue.1
, pp. 1-29
-
-
Riva, A.1
Borgo, F.2
Lassandro, C.3
-
18
-
-
45449098444
-
Human gut microbiota and bifidobacteria: from composition to functionality
-
Turroni F, Ribbera A, Foroni E, van Sinderen D, Ventura M. Human gut microbiota and bifidobacteria: from composition to functionality. Antonie Van Leeuwenhoek. 2008;94(1):35–50.
-
(2008)
Antonie Van Leeuwenhoek
, vol.94
, Issue.1
, pp. 35-50
-
-
Turroni, F.1
Ribbera, A.2
Foroni, E.3
van Sinderen, D.4
Ventura, M.5
-
19
-
-
84873723371
-
The influence of diet on the gut microbiota
-
Scott KP, Gratz SW, Sheridan PO, Flint HJ, Duncan SH. The influence of diet on the gut microbiota. Pharmacol Res. 2012;69(1):52–60.
-
(2012)
Pharmacol Res
, vol.69
, Issue.1
, pp. 52-60
-
-
Scott, K.P.1
Gratz, S.W.2
Sheridan, P.O.3
Flint, H.J.4
Duncan, S.H.5
-
20
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig JE, Spor A, Scalfone N. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A. 2011;108(suppl 1):4578–4585.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
-
21
-
-
80053393387
-
Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria
-
Asakuma S, Hatakeyama E, Urashima T. Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria. J Biol Chem. 2011;286(40):34583–34592.
-
(2011)
J Biol Chem
, vol.286
, Issue.40
, pp. 34583-34592
-
-
Asakuma, S.1
Hatakeyama, E.2
Urashima, T.3
-
22
-
-
84946487673
-
Fecal microbiota composition of breast-fed infants is correlated with human milk oligosaccharides consumed
-
Wang M, Li M, Wu S. Fecal microbiota composition of breast-fed infants is correlated with human milk oligosaccharides consumed. J Pediatr Gastroenterol Nutr. 2015;60(6):825–833.
-
(2015)
J Pediatr Gastroenterol Nutr
, vol.60
, Issue.6
, pp. 825-833
-
-
Wang, M.1
Li, M.2
Wu, S.3
-
23
-
-
84998886367
-
Human milk oligosaccharide effects on intestinal function and inflammation after preterm birth in pigs
-
Rasmussen SO, Martin L, Østergaard MV. Human milk oligosaccharide effects on intestinal function and inflammation after preterm birth in pigs. J Nutr Biochem. 2017;40:141–154.
-
(2017)
J Nutr Biochem
, vol.40
, pp. 141-154
-
-
Rasmussen, S.O.1
Martin, L.2
Østergaard, M.V.3
-
24
-
-
85006293432
-
Microbiota network and mathematic microbe mutualism in colostrum and mature milk collected in two different geographic areas: Italy versus Burundi
-
Drago L, Toscano M, De Grandi R, Grossi E, Padovani EM, Peroni DG. Microbiota network and mathematic microbe mutualism in colostrum and mature milk collected in two different geographic areas: Italy versus Burundi. ISME J. 2016;11(4):1–10.
-
(2016)
ISME J
, vol.11
, Issue.4
, pp. 1-10
-
-
Drago, L.1
Toscano, M.2
De Grandi, R.3
Grossi, E.4
Padovani, E.M.5
Peroni, D.G.6
-
25
-
-
84879743992
-
Concepts and mechanisms: crossing host barriers
-
Doran KS, Banerjee A, Disson O, Lecuit M. Concepts and mechanisms: crossing host barriers. Cold Spring Harb Perspect Med. 2013;3(7):a010090.
-
(2013)
Cold Spring Harb Perspect Med
, vol.3
, Issue.7
, pp. a010090
-
-
Doran, K.S.1
Banerjee, A.2
Disson, O.3
Lecuit, M.4
-
26
-
-
84901479665
-
Diet, the gut microbiome, and epigenetics
-
Hullar MA, Fu BC. Diet, the gut microbiome, and epigenetics. Cancer J. 2014;20(3):170–175.
-
(2014)
Cancer J
, vol.20
, Issue.3
, pp. 170-175
-
-
Hullar, M.A.1
Fu, B.C.2
-
27
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C, Cavalieri D, Di Paola M. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A. 2010;107(33):14691–14696.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.33
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
-
28
-
-
84988874574
-
Age and gender affect the composition of fungal population of the human gastrointestinal tract
-
Strati F, Di Paola M, Stefanini I. Age and gender affect the composition of fungal population of the human gastrointestinal tract. Front Microbiol. 2016;7:1227.
-
(2016)
Front Microbiol
, vol.7
, pp. 1227
-
-
Strati, F.1
Di Paola, M.2
Stefanini, I.3
-
29
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota. Nature. 2012;489(7415):220–230.
-
(2012)
Nature
, vol.489
, Issue.7415
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
Knight, R.5
-
30
-
-
84874612821
-
The human microbiome project strategy for comprehensive sampling of the human microbiome and why it matters
-
Aagaard K, J Petrosino J, Keitel W. The human microbiome project strategy for comprehensive sampling of the human microbiome and why it matters. FASEB J. 2013;27(3):1012–1022.
-
(2013)
FASEB J
, vol.27
, Issue.3
, pp. 1012-1022
-
-
Aagaard, K.1
J Petrosino, J.2
Keitel, W.3
-
31
-
-
84900329758
-
mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities
-
Ma J, Coarfa C, Qin X. mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities. BMC Genomics. 2014;15:257.
-
(2014)
BMC Genomics
, vol.15
, pp. 257
-
-
Ma, J.1
Coarfa, C.2
Qin, X.3
-
32
-
-
84858376593
-
The impact of the gut microbiota on human health: an integrative view
-
Clemente JC, Ursell LK, Parfrey LW, Knight R. The impact of the gut microbiota on human health: an integrative view. Cell. 2012;148(6):1258–1270.
-
(2012)
Cell
, vol.148
, Issue.6
, pp. 1258-1270
-
-
Clemente, J.C.1
Ursell, L.K.2
Parfrey, L.W.3
Knight, R.4
-
33
-
-
84922805709
-
Immune homeostasis, dysbiosis and therapeutic modulation of the gut microbiota
-
Peterson CT, Sharma V, Elmén L, Peterson SN. Immune homeostasis, dysbiosis and therapeutic modulation of the gut microbiota. Clin Exp Immunol. 2015;179(3):363–377.
-
(2015)
Clin Exp Immunol
, vol.179
, Issue.3
, pp. 363-377
-
-
Peterson, C.T.1
Sharma, V.2
Elmén, L.3
Peterson, S.N.4
-
34
-
-
84922858726
-
The infant microbiome development: mom matters
-
Mueller NT, Bakacs E, Combellick J, Grigoryan Z, Dominguez-Bello MG. The infant microbiome development: mom matters. Trends Mol Med. 2015;21(2):109–117.
-
(2015)
Trends Mol Med
, vol.21
, Issue.2
, pp. 109-117
-
-
Mueller, N.T.1
Bakacs, E.2
Combellick, J.3
Grigoryan, Z.4
Dominguez-Bello, M.G.5
-
35
-
-
85005950939
-
Stillbirths at term: case control study of risk factors, growth status and placental histology
-
Mecacci F, Serena C, Avagliano L. Stillbirths at term: case control study of risk factors, growth status and placental histology. PLoS One. 2016;11(12):e0166514.
-
(2016)
PLoS One
, vol.11
, Issue.12
, pp. e0166514
-
-
Mecacci, F.1
Serena, C.2
Avagliano, L.3
-
36
-
-
84920644670
-
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
-
Salter SJ, Cox MJ, Turek EM. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12:87.
-
(2014)
BMC Biol
, vol.12
, pp. 87
-
-
Salter, S.J.1
Cox, M.J.2
Turek, E.M.3
-
37
-
-
84976905145
-
ProbeBase-an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016
-
Greuter D, Loy A, Horn M, Rattei T. ProbeBase-an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016. Nucleic Acids Res. 2016;44(D1):D586–D589.
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.D1
, pp. D586-D589
-
-
Greuter, D.1
Loy, A.2
Horn, M.3
Rattei, T.4
-
38
-
-
84878076092
-
Identification of pathogens in mastitis milk samples with fluorescent in situ hybridization
-
Gey A, Werckenthin C, Poppert S, Straubinger RK. Identification of pathogens in mastitis milk samples with fluorescent in situ hybridization. J Vet Diagn Invest. 2013;25(3):386–394.
-
(2013)
J Vet Diagn Invest
, vol.25
, Issue.3
, pp. 386-394
-
-
Gey, A.1
Werckenthin, C.2
Poppert, S.3
Straubinger, R.K.4
-
39
-
-
84867744191
-
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
-
Berry D, Schwab C, Milinovich G. Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. ISME J. 2012;6(11):2091–2106.
-
(2012)
ISME J
, vol.6
, Issue.11
, pp. 2091-2106
-
-
Berry, D.1
Schwab, C.2
Milinovich, G.3
-
40
-
-
85011961693
-
Rett syndrome: a focus on gut microbiota
-
Borghi E, Borgo F, Severgnini M, Savini MN, Casiraghi MC, Vignoli A. Rett syndrome: a focus on gut microbiota. Int J Mol Sci. 2017;18(2):E344.
-
(2017)
Int J Mol Sci
, vol.18
, Issue.2
, pp. E344
-
-
Borghi, E.1
Borgo, F.2
Severgnini, M.3
Savini, M.N.4
Casiraghi, M.C.5
Vignoli, A.6
-
41
-
-
84857011001
-
PANDAseq: paired-end assembler for Illumina sequences
-
Masella AP, Bartram AK, Truszkowski JM, Brown DG, Neufeld JD. PANDAseq: paired-end assembler for Illumina sequences. BMC Bioinformatics. 2012;13:31.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 31
-
-
Masella, A.P.1
Bartram, A.K.2
Truszkowski, J.M.3
Brown, D.G.4
Neufeld, J.D.5
-
42
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–336.
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
43
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol. 2005;71(12):8228–8235.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
|