-
1
-
-
77952895134
-
Species recognition and clinical relevance of the zygomycetous genus Lichtheimia (syn
-
Alastruey-Izquierdo, A., Hoffmann, K., De Hoog, G. S., Rodriguez-Tudela, J. L., Voigt, K., Bibashi, E., et al. (2010). Species recognition and clinical relevance of the zygomycetous genus Lichtheimia (syn. Absidia pro parte, Mycocladus). J. Clin. Microbiol. 48, 2154-2170. doi: 10.1128/JCM.01744-09
-
(2010)
Absidia pro parte, Mycocladus). J. Clin. Microbiol
, vol.48
, pp. 2154-2170
-
-
Alastruey-Izquierdo, A.1
Hoffmann, K.2
De Hoog, G.S.3
Rodriguez-Tudela, J.L.4
Voigt, K.5
Bibashi, E.6
-
2
-
-
84930225510
-
MICCA: a complete and accurate software for taxonomic profiling of metagenomic data
-
Albanese, D., Fontana, P., De Filippo, C., Cavalieri, D., and Donati, C. (2015). MICCA: a complete and accurate software for taxonomic profiling of metagenomic data. Sci. Rep. 5:9743. doi: 10.1038/srep09743
-
(2015)
Sci. Rep
, vol.5
, pp. 9743
-
-
Albanese, D.1
Fontana, P.2
De Filippo, C.3
Cavalieri, D.4
Donati, C.5
-
3
-
-
33845633202
-
Susceptibility of environmental versus clinical strains of pathogenic Aspergillus
-
Araujo, R., Pina-Vaz, C., and Rodrigues, A. G. (2007). Susceptibility of environmental versus clinical strains of pathogenic Aspergillus. Int. J. Antimicrob. Agents 29, 108-111. doi: 10.1016/j.ijantimicag.2006.09.019
-
(2007)
Int. J. Antimicrob. Agents
, vol.29
, pp. 108-111
-
-
Araujo, R.1
Pina-Vaz, C.2
Rodrigues, A.G.3
-
4
-
-
80052219362
-
Diagnostic issues, clinical characteristics, and outcomes for patients with fungemia
-
Arendrup, M. C., Sulim, S., Holm, A., Nielsen, L., Nielsen, S. D., Knudsen, J. D., et al. (2011). Diagnostic issues, clinical characteristics, and outcomes for patients with fungemia. J. Clin. Microbiol. 49, 3300-3308. doi: 10.1128/JCM.00179-11
-
(2011)
J. Clin. Microbiol
, vol.49
, pp. 3300-3308
-
-
Arendrup, M.C.1
Sulim, S.2
Holm, A.3
Nielsen, L.4
Nielsen, S.D.5
Knudsen, J.D.6
-
5
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., et al. (2011). Enterotypes of the human gut microbiome. Nature 473, 174-180. doi: 10.1038/nature09944
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
6
-
-
84855949919
-
The microbial ecology of wine grape berries
-
Barata, A., Malfeito-Ferreira, M., and Loureiro, V. (2012). The microbial ecology of wine grape berries. Int. J. Food Microbiol. 153, 243-259. doi: 10.1016/j.ijfoodmicro.2011.11.025
-
(2012)
Int. J. Food Microbiol
, vol.153
, pp. 243-259
-
-
Barata, A.1
Malfeito-Ferreira, M.2
Loureiro, V.3
-
7
-
-
84925483320
-
Dynamic analysis of physiological properties of Torulaspora delbrueckii in wine fermentations and its incidence on wine quality
-
Belda, I., Navascues, E., Marquina, D., Santos, A., Calderon, F., and Benito, S. (2015). Dynamic analysis of physiological properties of Torulaspora delbrueckii in wine fermentations and its incidence on wine quality. Appl. Microbiol. Biotechnol. 99, 1911-1922. doi: 10.1007/s00253-014-6197-2
-
(2015)
Appl. Microbiol. Biotechnol
, vol.99
, pp. 1911-1922
-
-
Belda, I.1
Navascues, E.2
Marquina, D.3
Santos, A.4
Calderon, F.5
Benito, S.6
-
8
-
-
84988840990
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. Ser. B 57, 289-300.
-
(1995)
J. Roy. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
9
-
-
84881109897
-
Yeast diversity isolated from grape musts during spontaneous fermentation from a Brazilian winery
-
Bezerra-Bussoli, C., Baffi, M. A., Gomes, E., and Da-Silva, R. (2013). Yeast diversity isolated from grape musts during spontaneous fermentation from a Brazilian winery. Curr. Microbiol. 67, 356-361. doi: 10.1007/s00284-013-0375-9
-
(2013)
Curr. Microbiol
, vol.67
, pp. 356-361
-
-
Bezerra-Bussoli, C.1
Baffi, M.A.2
Gomes, E.3
Da-Silva, R.4
-
10
-
-
84905276988
-
Individual diet has sex-dependent effects on vertebrate gut microbiota
-
Bolnick, D. I., Snowberg, L. K., Hirsch, P. E., Lauber, C. L., Org, E., Parks, B., et al. (2014). Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat. Commun. 5, 4500. doi: 10.1038/ncomms5500
-
(2014)
Nat. Commun
, vol.5
, pp. 4500
-
-
Bolnick, D.I.1
Snowberg, L.K.2
Hirsch, P.E.3
Lauber, C.L.4
Org, E.5
Parks, B.6
-
11
-
-
33646539781
-
Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract
-
Bougnoux, M. E., Diogo, D., Francois, N., Sendid, B., Veirmeire, S., Colombel, J. F., et al. (2006). Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract. J. Clin. Microbiol. 44, 1810-1820. doi: 10.1128/JCM.44.5.1810-1820.2006
-
(2006)
J. Clin. Microbiol
, vol.44
, pp. 1810-1820
-
-
Bougnoux, M.E.1
Diogo, D.2
Francois, N.3
Sendid, B.4
Veirmeire, S.5
Colombel, J.F.6
-
12
-
-
84855396203
-
Hyphal growth in human fungal pathogens and its role in virulence
-
Brand, A. (2011). Hyphal growth in human fungal pathogens and its role in virulence. Int. J. Microbiol. 2012:517529. doi: 10.1155/2012/517529
-
(2011)
Int. J. Microbiol
, vol.2012
-
-
Brand, A.1
-
13
-
-
84871502341
-
Hidden killers: human fungal infections
-
Brown, G. D., Denning, D. W., Gow, N. A., Levitz, S. M., Netea, M. G., and White, T. C. (2012). Hidden killers: human fungal infections. Sci. Transl. Med. 4, 165rv113. doi: 10.1126/scitranslmed.3004404
-
(2012)
Sci. Transl. Med
, vol.4
-
-
Brown, G.D.1
Denning, D.W.2
Gow, N.A.3
Levitz, S.M.4
Netea, M.G.5
White, T.C.6
-
14
-
-
11144252791
-
The genus Eurotium-members of indigenous fungal community in hypersaline waters of salterns
-
Butinar, L., Zalar, P., Frisvad, J. C., and Gunde-Cimerman, N. (2005). The genus Eurotium-members of indigenous fungal community in hypersaline waters of salterns. FEMS Microbiol. Ecol. 51, 155-166. doi: 10.1016/j.femsec.2004.08.002
-
(2005)
FEMS Microbiol. Ecol
, vol.51
, pp. 155-166
-
-
Butinar, L.1
Zalar, P.2
Frisvad, J.C.3
Gunde-Cimerman, N.4
-
15
-
-
84930334551
-
Activity of echinocandins and triazoles against a contemporary (2012) worldwide collection of yeast and moulds collected from invasive infections
-
Castanheira, M., Messer, S. A., Jones, R. N., Farrell, D. J., and Pfaller, M. A. (2014). Activity of echinocandins and triazoles against a contemporary (2012) worldwide collection of yeast and moulds collected from invasive infections. Int. J. Antimicrob. Agents 44, 320-326. doi: 10.1016/j.ijantimicag.2014.06.007
-
(2014)
Int. J. Antimicrob. Agents
, vol.44
, pp. 320-326
-
-
Castanheira, M.1
Messer, S.A.2
Jones, R.N.3
Farrell, D.J.4
Pfaller, M.A.5
-
16
-
-
0346750650
-
Evidence for S. cerevisiae fermentation in ancient wine
-
Cavalieri, D., McGovern, P. E., Hartl, D. L., Mortimer, R., and Polsinelli, M. (2003). Evidence for S. cerevisiae fermentation in ancient wine. J. Mol. Evol. 57 (Suppl. 1), S226-S232. doi: 10.1007/s00239-003-0031-2
-
(2003)
J. Mol. Evol
, vol.57
, pp. S226-S232
-
-
Cavalieri, D.1
McGovern, P.E.2
Hartl, D.L.3
Mortimer, R.4
Polsinelli, M.5
-
17
-
-
0034710896
-
Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis
-
Cavalieri, D., Townsend, J. P., and Hartl, D. L. (2000). Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis. Proc. Natl. Acad. Sci. U.S.A. 97, 12369-12374. doi: 10.1073/pnas.210395297
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 12369-12374
-
-
Cavalieri, D.1
Townsend, J.P.2
Hartl, D.L.3
-
18
-
-
77956647847
-
Antifungal therapy in invasive fungal infections
-
Chen, S. C., Playford, E. G., and Sorrell, T. C. (2010). Antifungal therapy in invasive fungal infections. Curr. Opin. Pharmacol. 10, 522-530. doi: 10.1016/j.coph.2010.06.002
-
(2010)
Curr. Opin. Pharmacol
, vol.10
, pp. 522-530
-
-
Chen, S.C.1
Playford, E.G.2
Sorrell, T.C.3
-
19
-
-
2442676934
-
Germination of Penicillium paneum Conidia is regulated by 1-octen-3-ol, a volatile self-inhibitor
-
Chitarra, G. S., Abee, T., Rombouts, F. M., Posthumus, M. A., and Dijksterhuis, J. (2004). Germination of Penicillium paneum Conidia is regulated by 1-octen-3-ol, a volatile self-inhibitor. Appl. Environ. Microbiol. 70, 2823-2829. doi: 10.1128/AEM.70.5.2823-2829.2004
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 2823-2829
-
-
Chitarra, G.S.1
Abee, T.2
Rombouts, F.M.3
Posthumus, M.A.4
Dijksterhuis, J.5
-
20
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., et al. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563. doi: 10.1038/nature12820
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
21
-
-
85028376497
-
Population genomics of Saccharomyces cerevisiae human isolates: passengers, colonizers, invaders
-
De Filippo, C., Di Paola, M., Stefanini, I., Rizzetto, L., Berná, L., Ramazzotti, M., et al. (2014). Population genomics of Saccharomyces cerevisiae human isolates: passengers, colonizers, invaders. bioRxiv. doi: 10.1101/001891
-
(2014)
bioRxiv
-
-
De Filippo, C.1
Di Paola, M.2
Stefanini, I.3
Rizzetto, L.4
Berná, L.5
Ramazzotti, M.6
-
22
-
-
0030459375
-
Penicillium brevicompactum as the cause of a necrotic lung ball in an allogeneic bone marrow transplant recipient
-
de la Camara, R., Pinilla, I., Munoz, E., Buendia, B., Steegmann, J. L., and Fernandez-Ranada, J. M. (1996). Penicillium brevicompactum as the cause of a necrotic lung ball in an allogeneic bone marrow transplant recipient. Bone Marrow Transplant. 18, 1189-1193.
-
(1996)
Bone Marrow Transplant
, vol.18
, pp. 1189-1193
-
-
de la Camara, R.1
Pinilla, I.2
Munoz, E.3
Buendia, B.4
Steegmann, J.L.5
Fernandez-Ranada, J.M.6
-
23
-
-
84905270297
-
Isolation, selection and evaluation of yeasts for use in fermentation of coffee beans by the wet process
-
de Melo Pereira, G. V., Soccol, V. T., Pandey, A., Medeiros, A. B., Andrade Lara, J. M., Gollo, A. L., et al. (2014). Isolation, selection and evaluation of yeasts for use in fermentation of coffee beans by the wet process. Int. J. Food Microbiol. 188, 60-66. doi: 10.1016/j.ijfoodmicro.2014.07.008
-
(2014)
Int. J. Food Microbiol
, vol.188
, pp. 60-66
-
-
de Melo Pereira, G.V.1
Soccol, V.T.2
Pandey, A.3
Medeiros, A.B.4
Andrade Lara, J.M.5
Gollo, A.L.6
-
25
-
-
84894626268
-
Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment
-
Dollive, S., Chen, Y. Y., Grunberg, S., Bittinger, K., Hoffmann, C., Vandivier, L., et al. (2013). Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment. PLoS ONE 8:e71806. doi: 10.1371/journal.pone.0071806
-
(2013)
PLoS ONE
, vol.8
-
-
Dollive, S.1
Chen, Y.Y.2
Grunberg, S.3
Bittinger, K.4
Hoffmann, C.5
Vandivier, L.6
-
26
-
-
84872765293
-
Characterization of the vaginal micro-and mycobiome in asymptomatic reproductive-age Estonian women
-
Drell, T., Lillsaar, T., Tummeleht, L., Simm, J., Aaspollu, A., Vain, E., et al. (2013). Characterization of the vaginal micro-and mycobiome in asymptomatic reproductive-age Estonian women. PLoS ONE 8:e54379. doi: 10.1371/journal.pone.0054379
-
(2013)
PLoS ONE
, vol.8
-
-
Drell, T.1
Lillsaar, T.2
Tummeleht, L.3
Simm, J.4
Aaspollu, A.5
Vain, E.6
-
27
-
-
84879414990
-
Topographic diversity of fungal and bacterial communities in human skin
-
Findley, K., Oh, J., Yang, J., Conlan, S., Deming, C., Meyer, J. A., et al. (2013). Topographic diversity of fungal and bacterial communities in human skin. Nature 498, 367-370. doi: 10.1038/nature12171
-
(2013)
Nature
, vol.498
, pp. 367-370
-
-
Findley, K.1
Oh, J.2
Yang, J.3
Conlan, S.4
Deming, C.5
Meyer, J.A.6
-
28
-
-
84907485876
-
Eukaryote culturomics of the gut reveals new species
-
Gouba, N., Raoult, D., and Drancourt, M. (2014). Eukaryote culturomics of the gut reveals new species. PLoS ONE 9:e106994. doi: 10.1371/journal.pone.0106994
-
(2014)
PLoS ONE
, vol.9
-
-
Gouba, N.1
Raoult, D.2
Drancourt, M.3
-
29
-
-
84875903218
-
Antimicrobial and probiotic properties of yeasts: from fundamental to novel applications
-
Hatoum, R., Labrie, S., and Fliss, I. (2012). Antimicrobial and probiotic properties of yeasts: from fundamental to novel applications. Front. Microbiol. 3:421. doi: 10.3389/fmicb.2012.00421
-
(2012)
Front. Microbiol
, vol.3
, pp. 421
-
-
Hatoum, R.1
Labrie, S.2
Fliss, I.3
-
30
-
-
34247647914
-
A phylogenetic overview of the Agaricomycotina
-
Hibbett, D. S. (2006). A phylogenetic overview of the Agaricomycotina. Mycologia 98, 917-925. doi: 10.3852/mycologia.98.6.917
-
(2006)
Mycologia
, vol.98
, pp. 917-925
-
-
Hibbett, D.S.1
-
31
-
-
0023481280
-
A 10-Minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia Coli
-
Hoffman, C. S., and Winston, F. (1987). A 10-Minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia Coli. Gene 57, 267-272. doi: 10.1016/0378-1119(87)90131-4
-
(1987)
Gene
, vol.57
, pp. 267-272
-
-
Hoffman, C.S.1
Winston, F.2
-
32
-
-
84879148662
-
Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
-
Hoffmann, C., Dollive, S., Grunberg, S., Chen, J., Li, H., Wu, G. D., et al. (2013). Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents. PLoS ONE 8:e66019. doi: 10.1371/journal.pone.0066019
-
(2013)
PLoS ONE
, vol.8
-
-
Hoffmann, C.1
Dollive, S.2
Grunberg, S.3
Chen, J.4
Li, H.5
Wu, G.D.6
-
33
-
-
84879786685
-
The emerging world of the fungal microbiome
-
Huffnagle, G. B., and Noverr, M. C. (2013). The emerging world of the fungal microbiome. Trends Microbiol. 21, 334-341. doi: 10.1016/j.tim.2013.04.002
-
(2013)
Trends Microbiol
, vol.21
, pp. 334-341
-
-
Huffnagle, G.B.1
Noverr, M.C.2
-
34
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Human Microbiome Project Consortium (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/nature11234
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
35
-
-
77950501911
-
Rare and emerging Candida species
-
Johnson, E. (2009). Rare and emerging Candida species. Curr. Fungal Infect. Rep. 3, 152-159. doi: 10.1007/s12281-009-0020-z
-
(2009)
Curr. Fungal Infect. Rep
, vol.3
, pp. 152-159
-
-
Johnson, E.1
-
36
-
-
0026327144
-
Bile salt/acid induction of DNA damage in bacterial and mammalian cells: implications for colon cancer
-
Kandell, R. L., and Bernstein, C. (1991). Bile salt/acid induction of DNA damage in bacterial and mammalian cells: implications for colon cancer. Nutr. Cancer 16, 227-238. doi: 10.1080/01635589109514161
-
(1991)
Nutr. Cancer
, vol.16
, pp. 227-238
-
-
Kandell, R.L.1
Bernstein, C.2
-
37
-
-
0038071565
-
An unusual native tricuspid valve endocarditis caused by Candida colliculosa
-
Kaygusuz, I., Mulazimoglu, L., Cerikcioglu, N., Toprak, A., Oktay, A., and Korten, V. (2003). An unusual native tricuspid valve endocarditis caused by Candida colliculosa. Clin. Microbiol. Infect. 9, 319-322. doi: 10.1046/j.1469-0691.2003.00511.x
-
(2003)
Clin. Microbiol. Infect
, vol.9
, pp. 319-322
-
-
Kaygusuz, I.1
Mulazimoglu, L.2
Cerikcioglu, N.3
Toprak, A.4
Oktay, A.5
Korten, V.6
-
38
-
-
0034947728
-
Faecal fungal flora in healthy volunteers and inpatients
-
Khatib, R., Riederer, K. M., Ramanathan, J., and Baran, J. Jr. (2001). Faecal fungal flora in healthy volunteers and inpatients. Mycoses 44, 151-156. doi: 10.1046/j.1439-0507.2001.00639.x
-
(2001)
Mycoses
, vol.44
, pp. 151-156
-
-
Khatib, R.1
Riederer, K.M.2
Ramanathan, J.3
Baran, J.4
-
39
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., et al. (2011). Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl. Acad. Sci. U.S.A. 108 (Suppl. 1), 4578-4585. doi: 10.1073/pnas.1000081107
-
(2011)
Proc. Natl. Acad. Sci. U.S.A
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
-
40
-
-
84886099720
-
Towards a unified paradigm for sequence-based identification of fungi
-
Koljalg, U., Nilsson, R. H., Abarenkov, K., Tedersoo, L., Taylor, A. F., Bahram, M., et al. (2013). Towards a unified paradigm for sequence-based identification of fungi. Mol. Ecol. 22, 5271-5277. doi: 10.1111/mec.12481
-
(2013)
Mol. Ecol
, vol.22
, pp. 5271-5277
-
-
Koljalg, U.1
Nilsson, R.H.2
Abarenkov, K.3
Tedersoo, L.4
Taylor, A.F.5
Bahram, M.6
-
41
-
-
84884867760
-
"The yeasts, a taxonomic study volume 1 fifth edition preface, "
-
5th Edn (Elsevier Science)
-
Kurtzman, C. P., Fell, J. W., and Boekhout, T. (eds.). (2011). "The yeasts, a taxonomic study volume 1 fifth edition preface, " in Yeasts: A Taxonomic Study, Vol. 1-3, 5th Edn (Elsevier Science), 13.
-
(2011)
Yeasts: A Taxonomic Study
, vol.1-3
, pp. 13
-
-
Kurtzman, C.P.1
Fell, J.W.2
Boekhout, T.3
-
42
-
-
84908279911
-
Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt
-
Lee, S. C., Billmyre, R. B., Li, A., Carson, S., Sykes, S. M., Huh, E. Y., et al. (2014). Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt. Mbio 5, e01390-e01314. doi: 10.1128/mBio.01390-14
-
(2014)
Mbio
, vol.5
-
-
Lee, S.C.1
Billmyre, R.B.2
Li, A.3
Carson, S.4
Sykes, S.M.5
Huh, E.Y.6
-
43
-
-
84866746852
-
Pleurostomophora richardsiae-an insidious fungus presenting in a man 44 years after initial inoculation: a case report and review of the literature
-
Levenstadt, J. S., Poutanen, S. M., Mohan, S., Zhang, S., and Silverman, M. (2012). Pleurostomophora richardsiae-an insidious fungus presenting in a man 44 years after initial inoculation: a case report and review of the literature. Can. J. Infect. Dis. Med. Microbiol. 23, 110-113. doi: 10.1155/2012/406982
-
(2012)
Can. J. Infect. Dis. Med. Microbiol
, vol.23
, pp. 110-113
-
-
Levenstadt, J.S.1
Poutanen, S.M.2
Mohan, S.3
Zhang, S.4
Silverman, M.5
-
44
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K., and Knight, R. (2012). Diversity, stability and resilience of the human gut microbiota. Nature 489, 220-230. doi: 10.1038/nature11550
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
Knight, R.5
-
45
-
-
84923100726
-
Dysbiosis of fungal microbiota in the intestinal mucosa of patients with colorectal adenomas
-
Luan, C., Xie, L., Yang, X., Miao, H., Lv, N., Zhang, R., et al. (2015). Dysbiosis of fungal microbiota in the intestinal mucosa of patients with colorectal adenomas. Sci. Rep. 5:7980. doi: 10.1038/srep07980
-
(2015)
Sci. Rep
, vol.5
, pp. 7980
-
-
Luan, C.1
Xie, L.2
Yang, X.3
Miao, H.4
Lv, N.5
Zhang, R.6
-
46
-
-
84874357602
-
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
-
Markle, J. G., Frank, D. N., Mortin-Toth, S., Robertson, C. E., Feazel, L. M., Rolle-Kampczyk, U., et al. (2013). Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science 339, 1084-1088. doi: 10.1126/science.1233521
-
(2013)
Science
, vol.339
, pp. 1084-1088
-
-
Markle, J.G.1
Frank, D.N.2
Mortin-Toth, S.3
Robertson, C.E.4
Feazel, L.M.5
Rolle-Kampczyk, U.6
-
47
-
-
84943768015
-
Obesity changes the human gut mycobiome
-
Mar Rodriguez, M., Perez, D., Javier Chaves, F., Esteve, E., Marin-Garcia, P., Xifra, G., et al. (2015). Obesity changes the human gut mycobiome. Sci. Rep. 5:14600. doi: 10.1038/srep14600
-
(2015)
Sci. Rep
, vol.5
, pp. 14600
-
-
Mar Rodriguez, M.1
Perez, D.2
Javier Chaves, F.3
Esteve, E.4
Marin-Garcia, P.5
Xifra, G.6
-
48
-
-
0034038884
-
The use of fluconazole and itraconazole in the treatment of Candida albicans infections: a review
-
Martin, M. V. (2000). The use of fluconazole and itraconazole in the treatment of Candida albicans infections: a review. J. Antimicrob. Chemother. 45, 555. doi: 10.1093/oxfordjournals.jac.a020880
-
(2000)
J. Antimicrob. Chemother
, vol.45
, pp. 555
-
-
Martin, M.V.1
-
49
-
-
84876427223
-
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
-
McMurdie, P. J., and Holmes, S. (2013). phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8:e61217. doi: 10.1371/journal.pone.0061217
-
(2013)
PLoS ONE
, vol.8
-
-
McMurdie, P.J.1
Holmes, S.2
-
50
-
-
2442660453
-
Effect of the adaptation to high bile salts concentrations on glycosidic activity, survival at low PH and cross-resistance to bile salts in Bifidobacterium
-
Noriega, L., Gueimonde, M., Sanchez, B., Margolles, A., and De Los Reyes-Gavilan, C. G. (2004). Effect of the adaptation to high bile salts concentrations on glycosidic activity, survival at low PH and cross-resistance to bile salts in Bifidobacterium. Int. J. Food Microbiol. 94, 79-86. doi: 10.1016/j.ijfoodmicro.2004.01.003
-
(2004)
Int. J. Food Microbiol
, vol.94
, pp. 79-86
-
-
Noriega, L.1
Gueimonde, M.2
Sanchez, B.3
Margolles, A.4
De Los Reyes-Gavilan, C.G.5
-
51
-
-
0034623005
-
T-Coffee: a novel method for fast and accurate multiple sequence alignment
-
Notredame, C., Higgins, D. G., and Heringa, J. (2000). T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302, 205-217. doi: 10.1006/jmbi.2000.4042
-
(2000)
J. Mol. Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
52
-
-
33847054088
-
Candida albicans strain maintenance, replacement, and microvariation demonstrated by multilocus sequence typing
-
Odds, F. C., Davidson, A. D., Jacobsen, M. D., Tavanti, A., Whyte, J. A., Kibbler, C. C., et al. (2006). Candida albicans strain maintenance, replacement, and microvariation demonstrated by multilocus sequence typing. J. Clin. Microbiol. 44, 3647-3658. doi: 10.1128/JCM.00934-06
-
(2006)
J. Clin. Microbiol
, vol.44
, pp. 3647-3658
-
-
Odds, F.C.1
Davidson, A.D.2
Jacobsen, M.D.3
Tavanti, A.4
Whyte, J.A.5
Kibbler, C.C.6
-
53
-
-
84916898718
-
The bacteriome-mycobiome interaction and antifungal host defense
-
Oever, J. T., and Netea, M. G. (2014). The bacteriome-mycobiome interaction and antifungal host defense. Eur. J. Immunol. 44, 3182-3191. doi: 10.1002/eji.201344405
-
(2014)
Eur. J. Immunol
, vol.44
, pp. 3182-3191
-
-
Oever, J.T.1
Netea, M.G.2
-
54
-
-
84865165327
-
Progress in antifungal susceptibility testing of Candida sp. by use of Clinical and Laboratory Standards Institute broth microdilution methods, 2010 to 2012
-
Pfaller, M. A., and Diekema, D. J. (2012). Progress in antifungal susceptibility testing of Candida spp. by use of Clinical and Laboratory Standards Institute broth microdilution methods, 2010 to 2012. J. Clin. Microbiol. 50, 2846-2856. doi: 10.1128/JCM.00937-12
-
(2012)
J. Clin. Microbiol
, vol.50
, pp. 2846-2856
-
-
Pfaller, M.A.1
Diekema, D.J.2
-
55
-
-
33646231985
-
Interpretive breakpoints for fluconazole and Candida revisited: a blueprint for the future of antifungal susceptibility testing
-
Pfaller, M. A., Diekema, D. J., and Sheehan, D. J. (2006). Interpretive breakpoints for fluconazole and Candida revisited: a blueprint for the future of antifungal susceptibility testing. Clin. Microbiol. Rev. 19, 435-447. doi: 10.1128/CMR.19.2.435-447.2006
-
(2006)
Clin. Microbiol. Rev
, vol.19
, pp. 435-447
-
-
Pfaller, M.A.1
Diekema, D.J.2
Sheehan, D.J.3
-
56
-
-
84871996857
-
Normal adaptation of Candida albicans to the murine gastrointestinal tract requires Efg1p-dependent regulation of metabolic and host defense genes
-
Pierce, J. V., Dignard, D., Whiteway, M., and Kumamoto, C. A. (2013). Normal adaptation of Candida albicans to the murine gastrointestinal tract requires Efg1p-dependent regulation of metabolic and host defense genes. Eukaryot. Cell 12, 37-49. doi: 10.1128/EC.00236-12
-
(2013)
Eukaryot. Cell
, vol.12
, pp. 37-49
-
-
Pierce, J.V.1
Dignard, D.2
Whiteway, M.3
Kumamoto, C.A.4
-
57
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price, M. N., Dehal, P. S., and Arkin, A. P. (2010). FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5:e9490. doi: 10.1371/journal.pone.0009490
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
59
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes, A., Haynes, M., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F., et al. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466, 334-338. doi: 10.1038/nature09199
-
(2010)
Nature
, vol.466
, pp. 334-338
-
-
Reyes, A.1
Haynes, M.2
Hanson, N.3
Angly, F.E.4
Heath, A.C.5
Rohwer, F.6
-
60
-
-
84916917777
-
Richness and diversity of mammalian fungal communities shape innate and adaptive immunity in health and disease
-
Rizzetto, L., De Filippo, C., and Cavalieri, D. (2014). Richness and diversity of mammalian fungal communities shape innate and adaptive immunity in health and disease. Eur. J. Immunol. 44, 3166-3181. doi: 10.1002/eji.201344403
-
(2014)
Eur. J. Immunol
, vol.44
, pp. 3166-3181
-
-
Rizzetto, L.1
De Filippo, C.2
Cavalieri, D.3
-
61
-
-
84962185629
-
Fungal chitin induces trained immunity in human monocytes during cross-talk of the host with Saccharomyces cerevisiae
-
Rizzetto, L., Ifrim, D. C., Moretti, S., Tocci, N., Cheng, S. C., Quintin, J., et al. (2016). Fungal chitin induces trained immunity in human monocytes during cross-talk of the host with Saccharomyces cerevisiae. J. Biol. Chem. 291, 7961-7972. doi: 10.1074/jbc.M115.699645
-
(2016)
J. Biol. Chem
, vol.291
, pp. 7961-7972
-
-
Rizzetto, L.1
Ifrim, D.C.2
Moretti, S.3
Tocci, N.4
Cheng, S.C.5
Quintin, J.6
-
62
-
-
52249111185
-
EUCAST DEFINITIVE DOCUMENT E. DEF 9.1: Method for the determination of broth dilution minimum inhibitory concentrations of antifungal agents for conidia forming moulds
-
Rodriguez-Tudela, J., Arendrup, M., Arikan, S., Barchiesi, F., Bille, J., Chryssanthou, E., et al. (2008a). EUCAST DEFINITIVE DOCUMENT E. DEF 9.1: Method for the determination of broth dilution minimum inhibitory concentrations of antifungal agents for conidia forming moulds. Clin. Microbiol. Infect. 14, 982-984.
-
(2008)
Clin. Microbiol. Infect
, vol.14
, pp. 982-984
-
-
Rodriguez-Tudela, J.1
Arendrup, M.2
Arikan, S.3
Barchiesi, F.4
Bille, J.5
Chryssanthou, E.6
-
63
-
-
40549124325
-
EUCAST Definitive Document EDef 7.1: method for the determination of broth dilution MICs of antifungal agents for fermentative yeasts: subcommittee on Antifungal Susceptibility Testing (AFST) of the ESCMID European Committee for Antimicrobial Susceptibility Testing (EUCAST)*
-
Rodriguez-Tudela, J., Arendrup, M., Barchiesi, F., Bille, J., Chryssanthou, E., Cuenca-Estrella, M., et al. (2008b). EUCAST Definitive Document EDef 7.1: method for the determination of broth dilution MICs of antifungal agents for fermentative yeasts: subcommittee on Antifungal Susceptibility Testing (AFST) of the ESCMID European Committee for Antimicrobial Susceptibility Testing (EUCAST)*. Clin. Microbiol. Infect. 14, 398-405. doi: 10.1111/j.1469-0691.2007.01935.x
-
(2008)
Clin. Microbiol. Infect
, vol.14
, pp. 398-405
-
-
Rodriguez-Tudela, J.1
Arendrup, M.2
Barchiesi, F.3
Bille, J.4
Chryssanthou, E.5
Cuenca-Estrella, M.6
-
64
-
-
79953163170
-
Immunity to fungal infections
-
Romani, L. (2011). Immunity to fungal infections. Nat. Rev. Immunol. 11, 275-288. doi: 10.1038/nri2939
-
(2011)
Nat. Rev. Immunol
, vol.11
, pp. 275-288
-
-
Romani, L.1
-
65
-
-
84919868901
-
Penicillium strains isolated from Slovak grape berries taxonomy assessment by secondary metabolite profile
-
Santini, A., Mikušová, P., Sulyok, M., Krska, R., Labuda, R., and Šrobárová, A. (2014). Penicillium strains isolated from Slovak grape berries taxonomy assessment by secondary metabolite profile. Mycotoxin Res. 30, 213-220. doi: 10.1007/s12550-014-0205-3
-
(2014)
Mycotoxin Res
, vol.30
, pp. 213-220
-
-
Santini, A.1
Mikušová, P.2
Sulyok, M.3
Krska, R.4
Labuda, R.5
Šrobárová, A.6
-
66
-
-
57349131283
-
Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and-independent analysis of faeces
-
Scanlan, P. D., and Marchesi, J. R. (2008). Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and-independent analysis of faeces. ISME J. 2, 1183-1193. doi: 10.1038/ismej.2008.76
-
(2008)
ISME J
, vol.2
, pp. 1183-1193
-
-
Scanlan, P.D.1
Marchesi, J.R.2
-
67
-
-
84907868514
-
The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota
-
Scanlan, P. D., Stensvold, C. R., Rajilic-Stojanovic, M., Heilig, H. G., De Vos, W. M., O'toole, P. W., et al. (2014). The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota. FEMS Microbiol. Ecol. 90, 326-330. doi: 10.1111/1574-6941.12396
-
(2014)
FEMS Microbiol. Ecol
, vol.90
, pp. 326-330
-
-
Scanlan, P.D.1
Stensvold, C.R.2
Rajilic-Stojanovic, M.3
Heilig, H.G.4
De Vos, W.M.5
O'toole, P.W.6
-
68
-
-
0036153420
-
Crosses between Saccharomyces cerevisiae and Saccharomyces bayanus generate fertile hybrids
-
Sebastiani, F., Barberio, C., Casalone, E., Cavalieri, D., and Polsinelli, M. (2002). Crosses between Saccharomyces cerevisiae and Saccharomyces bayanus generate fertile hybrids. Res. Microbiol. 153, 53-58. doi: 10.1016/S0923-2508(01)01286-4
-
(2002)
Res. Microbiol
, vol.153
, pp. 53-58
-
-
Sebastiani, F.1
Barberio, C.2
Casalone, E.3
Cavalieri, D.4
Polsinelli, M.5
-
69
-
-
84930539837
-
Invasive infections due to filamentous fungi other than Aspergillus: epidemiology and determinants of mortality
-
Slavin, M., Van Hal, S., Sorrell, T. C., Lee, A., Marriott, D. J., Daveson, K., et al. (2015). Invasive infections due to filamentous fungi other than Aspergillus: epidemiology and determinants of mortality. Clin. Microbiol. Infect. 21, e491-490. doi: 10.1016/j.cmi.2014.12.021
-
(2015)
Clin. Microbiol. Infect
, vol.21
, pp. e490-e491
-
-
Slavin, M.1
Van Hal, S.2
Sorrell, T.C.3
Lee, A.4
Marriott, D.J.5
Daveson, K.6
-
70
-
-
84857757180
-
Triazole fungicides can induce cross-resistance to medical triazoles in Aspergillus fumigatus
-
Snelders, E., Camps, S. M., Karawajczyk, A., Schaftenaar, G., Kema, G. H., Van Der Lee, H. A., et al. (2012). Triazole fungicides can induce cross-resistance to medical triazoles in Aspergillus fumigatus. PLoS ONE 7:e31801. doi: 10.1371/journal.pone.0031801
-
(2012)
PLoS ONE
, vol.7
-
-
Snelders, E.1
Camps, S.M.2
Karawajczyk, A.3
Schaftenaar, G.4
Kema, G.H.5
Van Der Lee, H.A.6
-
71
-
-
84958087463
-
Fungal microbiota dysbiosis in IBD
-
[Epub ahead of print]
-
Sokol, H., Leducq, V., Aschard, H., Pham, H. P., Jegou, S., Landman, C., et al. (2016). Fungal microbiota dysbiosis in IBD. Gut. doi: 10.1136/gutjnl-2015-310746. [Epub ahead of print].
-
(2016)
Gut
-
-
Sokol, H.1
Leducq, V.2
Aschard, H.3
Pham, H.P.4
Jegou, S.5
Landman, C.6
-
72
-
-
84892613008
-
Niche-specific requirement for hyphal wall protein 1 in virulence of Candida albicans
-
Staab, J. F., Datta, K., and Rhee, P. (2013). Niche-specific requirement for hyphal wall protein 1 in virulence of Candida albicans. PLoS ONE 8:e80842. doi: 10.1371/journal.pone.0080842
-
(2013)
PLoS ONE
, vol.8
-
-
Staab, J.F.1
Datta, K.2
Rhee, P.3
-
73
-
-
80052965456
-
Growth of Candida albicans hyphae
-
Sudbery, P. E. (2011). Growth of Candida albicans hyphae. Nat. Rev. Microbiol. 9, 737-748. doi: 10.1038/nrmicro2636
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 737-748
-
-
Sudbery, P.E.1
-
74
-
-
84963641621
-
-
R Foundation for Statistical Computing. Vienna: Austria. 2012
-
Team, R. C. (2014). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing. Vienna: Austria. 2012. ISBN 3-900051-07-0.
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
-
75
-
-
84881233896
-
Biodiversity and safety aspects of yeast strains characterized from vineyards and spontaneous fermentations in the Apulia Region, Italy
-
Tristezza, M., Vetrano, C., Bleve, G., Spano, G., Capozzi, V., Logrieco, A., et al. (2013). Biodiversity and safety aspects of yeast strains characterized from vineyards and spontaneous fermentations in the Apulia Region, Italy. Food Microbiol. 36, 335-342. doi: 10.1016/j.fm.2013.07.001
-
(2013)
Food Microbiol
, vol.36
, pp. 335-342
-
-
Tristezza, M.1
Vetrano, C.2
Bleve, G.3
Spano, G.4
Capozzi, V.5
Logrieco, A.6
-
76
-
-
84901296354
-
The mycobiota: interactions between commensal fungi and the host immune system
-
Underhill, D. M., and Iliev, I. D. (2014). The mycobiota: interactions between commensal fungi and the host immune system. Nat. Rev. Immunol. 14, 405-416. doi: 10.1038/nri3684
-
(2014)
Nat. Rev. Immunol
, vol.14
, pp. 405-416
-
-
Underhill, D.M.1
Iliev, I.D.2
-
77
-
-
84876744592
-
Characterization and stability of lactobacilli and yeast microbiota in kefir grains
-
Vardjan, T., Mohar Lorbeg, P., Rogelj, I., and Canzek Majhenic, A. (2013). Characterization and stability of lactobacilli and yeast microbiota in kefir grains. J. Dairy Sci. 96, 2729-2736. doi: 10.3168/jds.2012-5829
-
(2013)
J. Dairy Sci
, vol.96
, pp. 2729-2736
-
-
Vardjan, T.1
Mohar Lorbeg, P.2
Rogelj, I.3
Canzek Majhenic, A.4
-
78
-
-
84924301501
-
Candida albicans colonization and dissemination from the murine gastrointestinal tract: the influence of morphology and Th17 immunity
-
Vautier, S., Drummond, R. A., Chen, K., Murray, G. I., Kadosh, D., Brown, A. J., et al. (2015). Candida albicans colonization and dissemination from the murine gastrointestinal tract: the influence of morphology and Th17 immunity. Cell. Microbiol. 17, 445-450. doi: 10.1111/cmi.12388
-
(2015)
Cell. Microbiol
, vol.17
, pp. 445-450
-
-
Vautier, S.1
Drummond, R.A.2
Chen, K.3
Murray, G.I.4
Kadosh, D.5
Brown, A.J.6
-
79
-
-
0033869563
-
Flucytosine: a review of its pharmacology, clinical indications, pharmacokinetics, toxicity and drug interactions
-
Vermes, A., Guchelaar, H. J., and Dankert, J. (2000). Flucytosine: a review of its pharmacology, clinical indications, pharmacokinetics, toxicity and drug interactions. J. Antimicrob. Chemother. 46, 171-179. doi: 10.1093/jac/46.2.171
-
(2000)
J. Antimicrob. Chemother
, vol.46
, pp. 171-179
-
-
Vermes, A.1
Guchelaar, H.J.2
Dankert, J.3
-
80
-
-
27144518829
-
The morphology of Saccharomyces cerevisiae colonies is affected by cell adhesion and the budding pattern
-
Vopalenska, I., Hulkova, M., Janderova, B., and Palkova, Z. (2005). The morphology of Saccharomyces cerevisiae colonies is affected by cell adhesion and the budding pattern. Res. Microbiol. 156, 921-931. doi: 10.1016/j.resmic.2005.05.012
-
(2005)
Res. Microbiol
, vol.156
, pp. 921-931
-
-
Vopalenska, I.1
Hulkova, M.2
Janderova, B.3
Palkova, Z.4
-
81
-
-
84907562794
-
Monitoring of Saccharomyces cerevisiae, Hanseniaspora uvarum, and Starmerella bacillaris (synonym Candida zemplinina) populations during alcoholic fermentation by fluorescence in situ hybridization
-
Wang, C., Esteve-Zarzoso, B., and Mas, A. (2014). Monitoring of Saccharomyces cerevisiae, Hanseniaspora uvarum, and Starmerella bacillaris (synonym Candida zemplinina) populations during alcoholic fermentation by fluorescence in situ hybridization. Int. J. Food Microbiol. 191, 1-9. doi: 10.1016/j.ijfoodmicro.2014.08.014
-
(2014)
Int. J. Food Microbiol
, vol.191
, pp. 1-9
-
-
Wang, C.1
Esteve-Zarzoso, B.2
Mas, A.3
-
82
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267. doi: 10.1128/AEM.00062-07
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
84
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., et al. (2012). Human gut microbiome viewed across age and geography. Nature 486, 222-227. doi: 10.1038/nature11053
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
|