-
1
-
-
85059824924
-
Influenza
-
Internet. cited 17 Feb 2017.
-
World Health Organization. Influenza. In: Immunization, vaccines and biologicals: influenza [Internet]. [cited 17 Feb 2017]. Available: http://www.who.int/immunization/topics/influenza/en/
-
Immunization, Vaccines and Biologicals: Influenza
-
-
-
2
-
-
85039048596
-
Estimates of global seasonal influenza-associated respiratory mortality: A modelling study
-
0. PMID: 29248255
-
Iuliano AD, Roguski KM, Chang HH, Muscatello DJ, Palekar R, Tempia S, et al. Estimates of global seasonal influenza-associated respiratory mortality: a modelling study. The Lancet. 2017;0. https://doi.org/10.1016/S0140-6736(17)33293-2 PMID: 29248255
-
(2017)
The Lancet
-
-
Iuliano, A.D.1
Roguski, K.M.2
Chang, H.H.3
Muscatello, D.J.4
Palekar, R.5
Tempia, S.6
-
3
-
-
85040363548
-
Chasing seasonal influenza-the need for a universal influenza vaccine
-
PMID: 29185857
-
Paules CI, Sullivan SG, Subbarao K, Fauci AS. Chasing Seasonal Influenza-The Need for a Universal Influenza Vaccine. N Engl J Med. 2018; 378: 7-9. https://doi.org/10.1056/NEJMp1714916 PMID: 29185857
-
(2018)
N Engl J Med
, vol.378
, pp. 7-9
-
-
Paules, C.I.1
Sullivan, S.G.2
Subbarao, K.3
Fauci, A.S.4
-
4
-
-
84962635913
-
Variable influenza vaccine effectiveness by subtype: A systematic review and meta-analysis of test-negative design studies
-
PMID: 27061888
-
Belongia EA, Simpson MD, King JP, Sundaram ME, Kelley NS, Osterholm MT, et al. Variable influenza vaccine effectiveness by subtype: a systematic review and meta-analysis of test-negative design studies. Lancet Infect Dis. 2016; 16: 942-951. https://doi.org/10.1016/S1473-3099(16)00129-8 PMID: 27061888
-
(2016)
Lancet Infect Dis
, vol.16
, pp. 942-951
-
-
Belongia, E.A.1
Simpson, M.D.2
King, J.P.3
Sundaram, M.E.4
Kelley, N.S.5
Osterholm, M.T.6
-
6
-
-
79955121049
-
Microbiota regulates immune defense against respiratory tract influenza A virus infection
-
PMID: 21402903
-
Ichinohe T, Pang IK, Kumamoto Y, Peaper DR, Ho JH, Murray TS, et al. Microbiota regulates immune defense against respiratory tract influenza A virus infection. Proc Natl Acad Sci U S A. 2011; 108: 5354. https://doi.org/10.1073/pnas.1019378108 PMID: 21402903
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 5354
-
-
Ichinohe, T.1
Pang, I.K.2
Kumamoto, Y.3
Peaper, D.R.4
Ho, J.H.5
Murray, T.S.6
-
7
-
-
84864311450
-
Commensal bacteria calibrate the activation threshold of innate antiviral immunity
-
PMID: 22705104
-
Abt MC, Osborne LC, Monticelli LA, Doering TA, Alenghat T, Sonnenberg GF, et al. Commensal bacteria calibrate the activation threshold of innate antiviral immunity. Immunity. 2012; 37: 158-170. https://doi.org/10.1016/j.immuni.2012.04.011 PMID: 22705104
-
(2012)
Immunity
, vol.37
, pp. 158-170
-
-
Abt, M.C.1
Osborne, L.C.2
Monticelli, L.A.3
Doering, T.A.4
Alenghat, T.5
Sonnenberg, G.F.6
-
8
-
-
84996721515
-
Microbiome, metabolites and host immunity
-
PMID: 27883933
-
Levy M, Blacher E, Elinav E. Microbiome, metabolites and host immunity. Curr Opin Microbiol. 2017; 35: 8-15. https://doi.org/10.1016/j.mib.2016.10.003 PMID: 27883933
-
(2017)
Curr Opin Microbiol
, vol.35
, pp. 8-15
-
-
Levy, M.1
Blacher, E.2
Elinav, E.3
-
9
-
-
84895063754
-
Prebiotic and probiotic supplementation prevents rhinovirus infections in preterm infants: A randomized, placebo-controlled trial
-
PMID: 24131826
-
Luoto R, Ruuskanen O, Waris M, Kalliomäki M, Salminen S, Isolauri E. Prebiotic and probiotic supplementation prevents rhinovirus infections in preterm infants: A randomized, placebo-controlled trial. J Allergy Clin Immunol. 2014; 133: 405-413. https://doi.org/10.1016/j.jaci.2013.08.020 PMID: 24131826
-
(2014)
J Allergy Clin Immunol
, vol.133
, pp. 405-413
-
-
Luoto, R.1
Ruuskanen, O.2
Waris, M.3
Kalliomäki, M.4
Salminen, S.5
Isolauri, E.6
-
10
-
-
85028348393
-
A randomized synbiotic trial to prevent sepsis among infants in rural India
-
advance online publication
-
Panigrahi P, Parida S, Nanda NC, Satpathy R, Pradhan L, Chandel DS, et al. A randomized synbiotic trial to prevent sepsis among infants in rural India. Nature. 2017;advance online publication. https://doi.org/10.1038/nature23480
-
(2017)
Nature
-
-
Panigrahi, P.1
Parida, S.2
Nanda, N.C.3
Satpathy, R.4
Pradhan, L.5
Chandel, D.S.6
-
11
-
-
84907430877
-
Influenza glycoproteins: Hemagglutinin and neuraminidase
-
Webster RG, Monto AS, Braciale TJ, Lamb RA, editors. 2nd ed. Wiley
-
Russell RJ, Gamblin SJ, Skehel JJ. Influenza glycoproteins: hemagglutinin and neuraminidase. In: Webster RG, Monto AS, Braciale TJ, Lamb RA, editors. Textbook of Influenza. 2nd ed. Wiley; 2013.
-
(2013)
Textbook of Influenza
-
-
Russell, R.J.1
Gamblin, S.J.2
Skehel, J.J.3
-
12
-
-
85011060096
-
The role of respiratory viruses in the etiology of bacterial pneumonia: An ecological perspective
-
PMID: 26884414
-
Lee KH, Gordon A, Foxman B. The role of respiratory viruses in the etiology of bacterial pneumonia: An ecological perspective. Evol Med Public Health. 2016; 2016: 95-109. https://doi.org/10.1093/emph/ eow007 PMID: 26884414
-
(2016)
Evol Med Public Health
, vol.2016
, pp. 95-109
-
-
Lee, K.H.1
Gordon, A.2
Foxman, B.3
-
13
-
-
84994812757
-
Nasopharyngeal microbiota, host transcriptome, and disease severity in children with respiratory syncytial virus infection
-
PMID: 27135599
-
de Steenhuijsen Piters WAA, Heinonen S, Hasrat R, Bunsow E, Smith B, Suarez-Arrabal M-C, et al. Nasopharyngeal Microbiota, Host Transcriptome, and Disease Severity in Children with Respiratory Syncytial Virus Infection. Am J Respir Crit Care Med. 2016; 194: 1104-1115. https://doi.org/10.1164/rccm.201602-0220OC PMID: 27135599
-
(2016)
Am J Respir Crit Care Med
, vol.194
, pp. 1104-1115
-
-
De Steenhuijsen Piters, W.A.A.1
Heinonen, S.2
Hasrat, R.3
Bunsow, E.4
Smith, B.5
Suarez-Arrabal, M.-C.6
-
14
-
-
84893938829
-
Viruses and microbiome alterations
-
PMID: 24437408
-
Lynch SV. Viruses and Microbiome Alterations. Ann Am Thorac Soc. 2014; 11: S57-S60. https://doi.org/10.1513/AnnalsATS.201306-158MG PMID: 24437408
-
(2014)
Ann Am Thorac Soc
, vol.11
, pp. S57-S60
-
-
Lynch, S.V.1
-
15
-
-
84992389893
-
Taxa of the nasal microbiome are associated with influenza-specific IgA response to live attenuated influenza vaccine
-
PMID: 27643883
-
Salk HM, Simon WL, Lambert ND, Kennedy RB, Grill DE, Kabat BF, et al. Taxa of the Nasal Microbiome Are Associated with Influenza-Specific IgA Response to Live Attenuated Influenza Vaccine. PloS One. 2016; 11: e0162803. https://doi.org/10.1371/journal.pone.0162803 PMID: 27643883
-
(2016)
PloS One
, vol.11
-
-
Salk, H.M.1
Simon, W.L.2
Lambert, N.D.3
Kennedy, R.B.4
Grill, D.E.5
Kabat, B.F.6
-
16
-
-
84912127239
-
High nasopharyngeal pneumococcal density, increased by viral coinfection, is associated with invasive pneumococcal pneumonia
-
PMID: 24907383
-
Wolter N, Tempia S, Cohen C, Madhi SA, Venter M, Moyes J, et al. High Nasopharyngeal Pneumococcal Density, Increased by Viral Coinfection, Is Associated With Invasive Pneumococcal Pneumonia. J Infect Dis. 2014; 210: 1649-1657. https://doi.org/10.1093/infdis/jiu326 PMID: 24907383
-
(2014)
J Infect Dis
, vol.210
, pp. 1649-1657
-
-
Wolter, N.1
Tempia, S.2
Cohen, C.3
Madhi, S.A.4
Venter, M.5
Moyes, J.6
-
17
-
-
84880556333
-
Identifying the interaction between influenza and pneumococcal pneumonia using incidence data
-
PMID: 23803706
-
Shrestha S, Foxman B, Weinberger DM, Steiner C, Viboud C, Rohani P. Identifying the Interaction Between Influenza and Pneumococcal Pneumonia Using Incidence Data. Sci Transl Med. 2013; 5: 191ra84-191ra84. https://doi.org/10.1126/scitranslmed.3005982 PMID: 23803706
-
(2013)
Sci Transl Med
, vol.5
, pp. 191ra84
-
-
Shrestha, S.1
Foxman, B.2
Weinberger, D.M.3
Steiner, C.4
Viboud, C.5
Rohani, P.6
-
18
-
-
0034978230
-
Epidemiology of documented viral respiratory infections and acute otitis media in a cohort of children followed from two to twenty-four months of age
-
PMID: 11419498
-
Vesa S, Kleemola M, Blomqvist S, Takala A, Kilpi T, Hovi T. Epidemiology of documented viral respiratory infections and acute otitis media in a cohort of children followed from two to twenty-four months of age. Pediatr Infect Dis J. 2001; 20: 574-581. PMID: 11419498
-
(2001)
Pediatr Infect Dis J
, vol.20
, pp. 574-581
-
-
Vesa, S.1
Kleemola, M.2
Blomqvist, S.3
Takala, A.4
Kilpi, T.5
Hovi, T.6
-
19
-
-
51849103407
-
Predominant role of bacterial pneumonia as a cause of death in pandemic influenza: Implications for pandemic influenza preparedness
-
PMID: 18710327
-
Morens DM, Taubenberger JK, Fauci AS. Predominant Role of Bacterial Pneumonia as a Cause of Death in Pandemic Influenza: Implications for Pandemic Influenza Preparedness. J Infect Dis. 2008; 198: 962-970. https://doi.org/10.1086/591708 PMID: 18710327
-
(2008)
J Infect Dis
, vol.198
, pp. 962-970
-
-
Morens, D.M.1
Taubenberger, J.K.2
Fauci, A.S.3
-
20
-
-
84983027720
-
Co-colonization by Streptococcus pneumoniae and Staphylococcus aureus in the throat during acute respiratory illnesses
-
PMID: 27535335
-
de Lastours V, Malosh R, Ramadugu K, Srinivasan U, Dawid S, Ohmit S, et al. Co-colonization by Streptococcus pneumoniae and Staphylococcus aureus in the throat during acute respiratory illnesses. Epidemiol Infect. 2016; 1-13. https://doi.org/10.1017/S0950268816001473 PMID: 27535335
-
(2016)
Epidemiol Infect
, pp. 1-13
-
-
De Lastours, V.1
Malosh, R.2
Ramadugu, K.3
Srinivasan, U.4
Dawid, S.5
Ohmit, S.6
-
21
-
-
84992062733
-
Nasopharyngeal pneumococcal density and evolution of acute respiratory illnesses in young children, Peru, 2009-2011
-
PMID: 27767919
-
Fan RR, Howard LM, Griffin MR, Edwards KM, Zhu Y, Williams JV, et al. Nasopharyngeal Pneumococcal Density and Evolution of Acute Respiratory Illnesses in Young Children, Peru, 2009-2011. Emerg Infect Dis. 2016; 22: 1996-1999. https://doi.org/10.3201/eid2211.160902 PMID: 27767919
-
(2016)
Emerg Infect Dis
, vol.22
, pp. 1996-1999
-
-
Fan, R.R.1
Howard, L.M.2
Griffin, M.R.3
Edwards, K.M.4
Zhu, Y.5
Williams, J.V.6
-
22
-
-
85016068253
-
Differences in the nasopharyngeal microbiome during acute respiratory tract infection with human rhinovirus and respiratory syncytial virus in infancy
-
PMID: 27923952
-
Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, et al. Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy. J Infect Dis. 2016; 214: 1924-1928. https://doi.org/10.1093/infdis/jiw456 PMID: 27923952
-
(2016)
J Infect Dis
, vol.214
, pp. 1924-1928
-
-
Rosas-Salazar, C.1
Shilts, M.H.2
Tovchigrechko, A.3
Schobel, S.4
Chappell, J.D.5
Larkin, E.K.6
-
23
-
-
1442299471
-
Streptococcus pneumoniae colonisation: The key to pneumococcal disease
-
14998500
-
Bogaert D, De Groot R, Hermans PWM. Streptococcus pneumoniae colonisation: the key to pneumococcal disease. Lancet Infect Dis. 2004; 4: 144-154. https://doi.org/10.1016/S1473-3099(04)00938-7PMID: 14998500
-
(2004)
Lancet Infect Dis
, vol.4
, pp. 144-154
-
-
Bogaert, D.1
De Groot, R.2
Hermans, P.W.M.3
-
24
-
-
28044446133
-
The role of nasal carriage in Staphylococcus aureus infections
-
PMID: 16310147
-
Wertheim HFL, Melles DC, Vos MC, van Leeuwen W, van Belkum A, Verbrugh HA, et al. The role of nasal carriage in Staphylococcus aureus infections. Lancet Infect Dis. 2005; 5: 751-762. https://doi.org/10.1016/S1473-3099(05)70295-4 PMID: 16310147
-
(2005)
Lancet Infect Dis
, vol.5
, pp. 751-762
-
-
Wertheim, H.F.L.1
Melles, D.C.2
Vos, M.C.3
Van Leeuwen, W.4
Van Belkum, A.5
Verbrugh, H.A.6
-
25
-
-
84895073832
-
Immunosenescence and pneumococcal disease: An imbalance in host-pathogen interactions
-
PMID: 24503269
-
Krone CL, van de Groep K, Trzciński K, Sanders EAM, Bogaert D. Immunosenescence and pneumococcal disease: an imbalance in host-pathogen interactions. Lancet Respir Med. 2014; 2: 141-153. https://doi.org/10.1016/S2213-2600(13)70165-6 PMID: 24503269
-
(2014)
Lancet Respir Med
, vol.2
, pp. 141-153
-
-
Krone, C.L.1
Van De Groep, K.2
Trzciński, K.3
Sanders, E.A.M.4
Bogaert, D.5
-
26
-
-
84856521514
-
Dirichlet multinomial mixtures: Generative models for microbial metage-nomics
-
PMID: 22319561
-
Holmes I, Harris K, Quince C. Dirichlet multinomial mixtures: generative models for microbial metage-nomics. PloS One. 2012; 7: e30126. https://doi.org/10.1371/journal.pone.0030126 PMID: 22319561
-
(2012)
PloS One
, vol.7
-
-
Holmes, I.1
Harris, K.2
Quince, C.3
-
27
-
-
84866549438
-
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
-
PMID: 23013615
-
Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 2012; 13: R79. https://doi.org/10.1186/gb-2012-13-9-r79 PMID: 23013615
-
(2012)
Genome Biol
, vol.13
, pp. R79
-
-
Morgan, X.C.1
Tickle, T.L.2
Sokol, H.3
Gevers, D.4
Devaney, K.L.5
Ward, D.V.6
-
28
-
-
84949623334
-
Quantifying protection against influenza virus infection measured by hemagglutination-inhibition assays in vaccine trials
-
PMID: 26427723
-
Zhao X, Fang VJ, Ohmit SE, Monto AS, Cook AR, Cowling BJ. Quantifying Protection Against Influenza Virus Infection Measured by Hemagglutination-inhibition Assays in Vaccine Trials. Epidemiol Camb Mass. 2016; 27: 143-151. https://doi.org/10.1097/EDE.0000000000000402 PMID: 26427723
-
(2016)
Epidemiol Camb Mass
, vol.27
, pp. 143-151
-
-
Zhao, X.1
Fang, V.J.2
Ohmit, S.E.3
Monto, A.S.4
Cook, A.R.5
Cowling, B.J.6
-
29
-
-
79955092594
-
Microbial communities of the upper respiratory tract and otitis media in children
-
PMID: 21285435
-
Laufer AS, Metlay JP, Gent JF, Fennie KP, Kong Y, Pettigrew MM. Microbial communities of the upper respiratory tract and otitis media in children. mBio. 2011; 2: e00245-00210. https://doi.org/10.1128/mBio.00245-10 PMID: 21285435
-
(2011)
mBio
, vol.2
, pp. e00245-e100210
-
-
Laufer, A.S.1
Metlay, J.P.2
Gent, J.F.3
Fennie, K.P.4
Kong, Y.5
Pettigrew, M.M.6
-
30
-
-
84929513174
-
The infant airway microbiome in health and disease impacts later asthma development
-
PMID: 25865368
-
Teo SM, Mok D, Pham K, Kusel M, Serralha M, Troy N, et al. The infant airway microbiome in health and disease impacts later asthma development. Cell Host Microbe. 2015; 17: 704-715. https://doi.org/10.1016/j.chom.2015.03.008 PMID: 25865368
-
(2015)
Cell Host Microbe
, vol.17
, pp. 704-715
-
-
Teo, S.M.1
Mok, D.2
Pham, K.3
Kusel, M.4
Serralha, M.5
Troy, N.6
-
31
-
-
63849274029
-
Prevalence and seasonality of influenza-like illness in children, Nicaragua, 2005-2007
-
PMID: 19239753
-
Gordon A, Ortega O, Kuan G, Reingold A, Saborio S, Balmaseda A, et al. Prevalence and seasonality of influenza-like illness in children, Nicaragua, 2005-2007. Emerg Infect Dis. 2009; 15: 408-414. https://doi.org/10.3201/eid1503.080238 PMID: 19239753
-
(2009)
Emerg Infect Dis
, vol.15
, pp. 408-414
-
-
Gordon, A.1
Ortega, O.2
Kuan, G.3
Reingold, A.4
Saborio, S.5
Balmaseda, A.6
-
32
-
-
85058093807
-
Influenza surveillance and laboratory diagnosis
-
Webster RG, Monto AS, Braciale TJ, Lamb RA, editors. 2nd ed. Wiley
-
Zambon M. Influenza surveillance and laboratory diagnosis. In: Webster RG, Monto AS, Braciale TJ, Lamb RA, editors. Textbook of Influenza. 2nd ed. Wiley; 2013.
-
(2013)
Textbook of Influenza
-
-
Zambon, M.1
-
33
-
-
84898618697
-
Oseltamivir for influenza in adults and children: Systematic review of clinical study reports and summary of regulatory comments
-
PMID: 24811411
-
Jefferson T, Jones M, Doshi P, Spencer EA, Onakpoya I, Heneghan CJ. Oseltamivir for influenza in adults and children: systematic review of clinical study reports and summary of regulatory comments. BMJ. 2014; 348: g2545. https://doi.org/10.1136/bmj.g2545 PMID: 24811411
-
(2014)
BMJ
, vol.348
, pp. g2545
-
-
Jefferson, T.1
Jones, M.2
Doshi, P.3
Spencer, E.A.4
Onakpoya, I.5
Heneghan, C.J.6
-
34
-
-
84942789084
-
The fraction of influenza virus infections that are asymptomatic: A systematic review and meta-analysis
-
PMID: 26133025
-
Leung NHL, Xu C, Ip DKM, Cowling BJ. The fraction of influenza virus infections that are asymptomatic: a systematic review and meta-analysis. Epidemiol Camb Mass. 2015; 26: 862-872. https://doi.org/10.1097/EDE.0000000000000340 PMID: 26133025
-
(2015)
Epidemiol Camb Mass
, vol.26
, pp. 862-872
-
-
Leung, N.H.L.1
Xu, C.2
Ip, D.K.M.3
Cowling, B.J.4
-
35
-
-
67449110743
-
Emergence of a novel swine-origin influenza A (H1N1) virus in humans
-
PMID: 19423869
-
Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team, Dawood FS, Jain S, Finelli L, Shaw MW, Lindstrom S, et al. Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N Engl J Med. 2009; 360: 2605-2615. https://doi.org/10.1056/NEJMoa0903810 PMID: 19423869
-
(2009)
N Engl J Med
, vol.360
, pp. 2605-2615
-
-
Dawood, F.S.1
Jain, S.2
Finelli, L.3
Shaw, M.W.4
Lindstrom, S.5
-
36
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the Miseq Illumina sequencing platform
-
PMID: 23793624
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Appl Environ Microbiol. 2013; 79: 5112-5120. https://doi.org/10.1128/AEM. 01043-13 PMID: 23793624
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
37
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
PMID: 20534432
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci. 2011; 108: 4516-4522. https://doi.org/10.1073/pnas.1000080107 PMID: 20534432
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
-
38
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009; 75: 7537-7541. https://doi.org/10.1128/AEM.01541-09PMID: 19801464
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
39
-
-
85016628377
-
Are oligotypes meaningful ecological and phylogenetic units? A case study of microcystis in freshwater lakes
-
PMID: 28337183
-
Berry MA, White JD, Davis TW, Jain S, Johengen TH, Dick GJ, et al. Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes. Front Microbiol. 2017; 8: 365. https://doi.org/10.3389/fmicb.2017.00365 PMID: 28337183
-
(2017)
Front Microbiol
, vol.8
, pp. 365
-
-
Berry, M.A.1
White, J.D.2
Davis, T.W.3
Jain, S.4
Johengen, T.H.5
Dick, G.J.6
-
40
-
-
84925044505
-
Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
-
PMID: 25325381
-
Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML. Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. ISME J. 2015; 9: 968-979. https://doi.org/10.1038/ismej.2014.195 PMID: 25325381
-
(2015)
ISME J
, vol.9
, pp. 968-979
-
-
Eren, A.M.1
Morrison, H.G.2
Lescault, P.J.3
Reveillaud, J.4
Vineis, J.H.5
Sogin, M.L.6
-
41
-
-
80055041479
-
Exploring the diversity of gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation
-
PMID: 22046340
-
Eren AM, Zozaya M, Taylor CM, Dowd SE, Martin DH, Ferris MJ. Exploring the Diversity of Gardnerella vaginalis in the Genitourinary Tract Microbiota of Monogamous Couples Through Subtle Nucleotide Variation. PLOS ONE. 2011; 6: e26732. https://doi.org/10.1371/journal.pone.0026732 PMID: 22046340
-
(2011)
PLOS ONE
, vol.6
-
-
Eren, A.M.1
Zozaya, M.2
Taylor, C.M.3
Dowd, S.E.4
Martin, D.H.5
Ferris, M.J.6
-
42
-
-
84904324593
-
Oligotyping analysis of the human oral microbiome
-
PMID: 24965363
-
Eren AM, Borisy GG, Huse SM, Mark Welch JL. Oligotyping analysis of the human oral microbiome. Proc Natl Acad Sci U S A. 2014; 111: E2875-E2884. https://doi.org/10.1073/pnas.1409644111 PMID: 24965363
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. E2875-E2884
-
-
Eren, A.M.1
Borisy, G.G.2
Huse, S.M.3
Mark Welch, J.L.4
-
43
-
-
84927697837
-
A single genus in the gut microbiome reflects host preference and specificity
-
PMID: 24936765
-
Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, et al. A single genus in the gut microbiome reflects host preference and specificity. ISME J. 2015; 9: 90-100. https://doi.org/10.1038/ismej.2014.97 PMID: 24936765
-
(2015)
ISME J
, vol.9
, pp. 90-100
-
-
Eren, A.M.1
Sogin, M.L.2
Morrison, H.G.3
Vineis, J.H.4
Fisher, J.C.5
Newton, R.J.6
-
44
-
-
82555183004
-
The human oral microbiome database: A web accessible resource for investigating oral microbe taxonomic and genomic information
-
PMID: 20624719
-
Chen T, Yu W-H, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE. The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database J Biol Databases Curation. 2010; 2010: baq013. https://doi.org/10.1093/database/ baq013 PMID: 20624719
-
(2010)
Database J Biol Databases Curation
, vol.2010
, pp. baq013
-
-
Chen, T.1
Yu, W.-H.2
Izard, J.3
Baranova, O.V.4
Lakshmanan, A.5
Dewhirst, F.E.6
-
45
-
-
0025183708
-
Basic local alignment search tool
-
PMID: 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990; 215: 403-410. https://doi.org/10.1016/S0022-2836(05)80360-2 PMID: 2231712
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
46
-
-
84964927929
-
-
Internet. Vienna, Austria: R Foundation for Statistical Computing;
-
R Core Team. R: A language and environment for statistical computing [Internet]. Vienna, Austria: R Foundation for Statistical Computing; 2017. Available: https://www.R-project.org/
-
(2017)
R: A Language and Environment for Statistical Computing
-
-
-
48
-
-
84943645306
-
Fitting linear mixed-effects models using lme4
-
Bates D, Maechler M, Bolker B, Walker S. Fitting Linear Mixed-Effects Models Using lme4. J Stat Softw. 2015; 67: 1-48. https://doi.org/10.18637/jss.v067.i01
-
(2015)
J Stat Softw
, vol.67
, pp. 1-48
-
-
Bates, D.1
Maechler, M.2
Bolker, B.3
Walker, S.4
-
49
-
-
70349255569
-
-
Internet.
-
Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, et al. vegan: Community Ecology Package [Internet]. 2018. Available: https://CRAN.R-project.org/package=vegan
-
(2018)
Vegan: Community Ecology Package
-
-
Oksanen, J.1
Blanchet, F.G.2
Friendly, M.3
Kindt, R.4
Legendre, P.5
McGlinn, D.6
-
50
-
-
84941005620
-
Temporal and spatial variation of the human microbiota during pregnancy
-
PMID: 26283357
-
DiGiulio DB, Callahan BJ, McMurdie PJ, Costello EK, Lyell DJ, Robaczewska A, et al. Temporal and spatial variation of the human microbiota during pregnancy. Proc Natl Acad Sci U S A. 2015; 112: 11060-11065. https://doi.org/10.1073/pnas.1502875112 PMID: 26283357
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 11060-11065
-
-
DiGiulio, D.B.1
Callahan, B.J.2
McMurdie, P.J.3
Costello, E.K.4
Lyell, D.J.5
Robaczewska, A.6
|