메뉴 건너뛰기




Volumn 47, Issue D1, 2019, Pages D128-D134

Erratum: LncBook: A curated knowledgebase of human long non-coding RNAs (Nucleic Acids Research (2019) 47 (D128-D134) DOI: 10.1093/nar/gky960);Lncbook: A curated knowledgebase of human long non-coding rnas

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA;

EID: 85059796208     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkz073     Document Type: Erratum
Times cited : (187)

References (44)
  • 1
    • 84894532371 scopus 로고    scopus 로고
    • On the classification of long non-coding rnas
    • Ma, L., Bajic, V.B. and Zhang, Z. (2013) On the classification of long non-coding RNAs. RNA Biol., 10, 925-933
    • (2013) RNA Biol , vol.10 , pp. 925-933
    • Ma, L.1    Bajic, V.B.2    Zhang, Z.3
  • 3
    • 85019759452 scopus 로고    scopus 로고
    • Des-ncrna: A knowledgebase for exploring information about human micro and long noncoding rnas based on literature-mining
    • Salhi, A., Essack, M., Alam, T., Bajic, V.P., Ma, L., Radovanovic, A., Marchand, B., Schmeier, S., Zhang, Z. and Bajic, V.B. (2017) DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. RNA Biol., 14, 963-971
    • (2017) RNA Biol , vol.14 , pp. 963-971
    • Salhi, A.1    Essack, M.2    Alam, T.3    Bajic, V.P.4    Ma, L.5    Radovanovic, A.6    Marchand, B.7    Schmeier, S.8    Zhang, Z.9    Bajic, V.B.10
  • 4
    • 85020080988 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional gene regulation by long non-coding RNA
    • Dykes, I.M. and Emanueli, C. (2017) Transcriptional and Post-transcriptional gene regulation by long Non-coding RNA. Genomics Proteomics Bioinformatics, 15, 177-186
    • (2017) Genomics Proteomics Bioinformatics , vol.15 , pp. 177-186
    • Dykes, I.M.1    Emanueli, C.2
  • 7
    • 84976883041 scopus 로고    scopus 로고
    • Lnc2cancer: A manually curated database of experimentally supported lncRNAs associated with various human cancers
    • Ning, S., Zhang, J., Wang, P., Zhi, H., Wang, J., Liu, Y., Gao, Y., Guo, M., Yue, M., Wang, L. et al. (2016) Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. Nucleic Acids Res., 44, D980-D985
    • (2016) Nucleic Acids Res , vol.44 , pp. D980-D985
    • Ning, S.1    Zhang, J.2    Wang, P.3    Zhi, H.4    Wang, J.5    Liu, Y.6    Gao, Y.7    Guo, M.8    Yue, M.9    Wang, L.10
  • 8
    • 85027149996 scopus 로고    scopus 로고
    • Long non-coding rnas and complex diseases: From experimental results to computational models
    • Chen, X., Yan, C.C., Zhang, X. and You, Z.H. (2017) Long non-coding RNAs and complex diseases: from experimental results to computational models. Brief. Bioinform., 18, 558-576
    • (2017) Brief. Bioinform , vol.18 , pp. 558-576
    • Chen, X.1    Yan, C.C.2    Zhang, X.3    You, Z.H.4
  • 9
    • 84941100252 scopus 로고    scopus 로고
    • Lncrnawiki: Harnessing community knowledge in collaborative curation of human long non-coding rnas
    • Ma, L.N., Li, A., Zou, D., Xu, X.J., Xia, L., Yu, J., Bajic, V.B. and Zhang, Z. (2015) LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res., 43, D187-D192
    • (2015) Nucleic Acids Res , vol.43 , pp. D187-D192
    • Ma, L.N.1    Li, A.2    Zou, D.3    Xu, X.J.4    Xia, L.5    Yu, J.6    Bajic, V.B.7    Zhang, Z.8
  • 13
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding rnas reveals global properties and specific subclasses
    • Cabili, M.N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A. and Rinn, J.L. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev., 25, 1915-1927
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 17
    • 84929705123 scopus 로고    scopus 로고
    • Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species
    • Hezroni, H., Koppstein, D., Schwartz, M.G., Avrutin, A., Bartel, D.P. and Ulitsky, I. (2015) Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Cell Rep., 11, 1110-1122
    • (2015) Cell Rep , vol.11 , pp. 1110-1122
    • Hezroni, H.1    Koppstein, D.2    Schwartz, M.G.3    Avrutin, A.4    Bartel, D.P.5    Ulitsky, I.6
  • 19
    • 85016042529 scopus 로고    scopus 로고
    • The rnacentral consortium
    • RNAcentral: a comprehensive database of non-coding RNA sequences
    • The RNAcentral Consortium (2017) RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Res., 45, D128-D134
    • (2017) Nucleic Acids Res , vol.45 , pp. D128-D134
  • 20
    • 85040948177 scopus 로고    scopus 로고
    • Evlncrnas: A manually curated database for long non-coding rnas validated by low-throughput experiments
    • Zhou, B., Zhao, H., Yu, J., Guo, C., Dou, X., Song, F., Hu, G., Cao, Z., Qu, Y., Yang, Y. et al. (2018) EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. Nucleic Acids Res., 46, D100-D105
    • (2018) Nucleic Acids Res , vol.46 , pp. D100-D105
    • Zhou, B.1    Zhao, H.2    Yu, J.3    Guo, C.4    Dou, X.5    Song, F.6    Hu, G.7    Cao, Z.8    Qu, Y.9    Yang, Y.10
  • 21
    • 84891818924 scopus 로고    scopus 로고
    • Starbase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale clip-seq data
    • Li, J.H., Liu, S., Zhou, H., Qu, L.H. and Yang, J.H. (2014) starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res., 42, D92-D97
    • (2014) Nucleic Acids Res , vol.42 , pp. D92-D97
    • Li, J.H.1    Liu, S.2    Zhou, H.3    Qu, L.H.4    Yang, J.H.5
  • 23
    • 85040929756 scopus 로고    scopus 로고
    • Lncrnasnp2: An updated database of functional snps and mutations in human and mouse lncrnas
    • Miao, Y.R., Liu, W., Zhang, Q. and Guo, A.Y. (2018) lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs. Nucleic Acids Res., 46, D276-D280
    • (2018) Nucleic Acids Res , vol.46 , pp. D276-D280
    • Miao, Y.R.1    Liu, W.2    Zhang, Q.3    Guo, A.Y.4
  • 25
    • 85016104570 scopus 로고    scopus 로고
    • Big data center members
    • The BIG Data Center: from deposition to integration to translation
    • BIG Data Center Members. (2017) The BIG Data Center: from deposition to integration to translation. Nucleic Acids Res., 45, D18-D24
    • (2017) Nucleic Acids Res , vol.45 , pp. D18-D24
  • 26
    • 85040996048 scopus 로고    scopus 로고
    • Big, data center members
    • Database resources of the BIG data center in 2018
    • BIG, Data Center Members. (2018) Database resources of the BIG data center in 2018. Nucleic Acids Res., 46, D14-D20
    • (2018) Nucleic Acids Res , vol.46 , pp. D14-D20
  • 28
    • 84876020023 scopus 로고    scopus 로고
    • Cpat: Coding-potential assessment tool using an alignment-free logistic regression model
    • Wang, L., Park, H.J., Dasari, S., Wang, S., Kocher, J.P. and Li, W. (2013) CPAT: coding-potential assessment tool using an alignment-free logistic regression model. Nucleic Acids Res., 41, e74
    • (2013) Nucleic Acids Res , vol.41 , pp. e74
    • Wang, L.1    Park, H.J.2    Dasari, S.3    Wang, S.4    Kocher, J.P.5    Li, W.6
  • 29
    • 84908133238 scopus 로고    scopus 로고
    • Plek: A tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
    • Li, A., Zhang, J. and Zhou, Z. (2014) PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme. BMC Bioinformatics, 15, 311
    • (2014) BMC Bioinformatics , vol.15 , pp. 311
    • Li, A.1    Zhang, J.2    Zhou, Z.3
  • 31
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger, A.M., Lohse, M. and Usadel, B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 32
    • 84990992834 scopus 로고    scopus 로고
    • Transcript-level expression analysis of RNA-seq experiments with hisat, stringtie and ballgown
    • Pertea, M., Kim, D., Pertea, G.M., Leek, J.T. and Salzberg, S.L. (2016) Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nat. Protoc., 11, 1650-1667
    • (2016) Nat. Protoc , vol.11 , pp. 1650-1667
    • Pertea, M.1    Kim, D.2    Pertea, G.M.3    Leek, J.T.4    Salzberg, S.L.5
  • 33
    • 84929001104 scopus 로고    scopus 로고
    • The gtex consortium
    • Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
    • The GTEx Consortium. (2015) Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science, 348, 648-660
    • (2015) Science , vol.348 , pp. 648-660
  • 39
    • 77956534324 scopus 로고    scopus 로고
    • Annovar: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K., Li, M. and Hakonarson, H. (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res., 38, e164
    • (2010) Nucleic Acids Res , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 40
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microrna targets
    • Lewis, B.P., Burge, C.B. and Bartel, D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 42
    • 84891781832 scopus 로고    scopus 로고
    • Hmdd v2.0: A database for experimentally supported human microrna and disease associations
    • Li, Y., Qiu, C., Tu, J., Geng, B., Yang, J., Jiang, T. and Cui, Q. (2014) HMDD v2.0: a database for experimentally supported human microRNA and disease associations. Nucleic Acids Res., 42, D1070-D1074
    • (2014) Nucleic Acids Res , vol.42 , pp. D1070-D1074
    • Li, Y.1    Qiu, C.2    Tu, J.3    Geng, B.4    Yang, J.5    Jiang, T.6    Cui, Q.7
  • 44
    • 85020252376 scopus 로고    scopus 로고
    • High-confidence coding and noncoding transcriptome maps
    • You, B.H., Yoon, S.H. and Nam, J.W. (2017) High-confidence coding and noncoding transcriptome maps. Genome Res., 27, 1050-1062
    • (2017) Genome Res , vol.27 , pp. 1050-1062
    • You, B.H.1    Yoon, S.H.2    Nam, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.