Database Resources of the BIG Data Center in 2018

Nucleic Acids Research

Volumn 46, Issue D1, 2018, Pages D14-D20

  Xu, Xingjian ^a   Hao, Lili ^a   Zhu, Junwei ^a   Tang, Bixia ^a   Zhou, Qing ^a   Song, Fuhai ^a   Chen, Tingting ^a   Zhang, Sisi ^a   Dong, Lili ^a   Lan, Li ^a   Sang, Jian ^a   Liang, Fang ^a   Cao, Jiabao ^a   Liu, Fang ^a   Liu, Lin ^a   Wang, Fan ^a   Ma, Yingke ^a   Zhang, Lijuan ^a   Chen, Meili ^a   Tian, Dongmei ^a   Li, Cuiping ^a   Du, Zhenglin ^a   Yuan, Na ^a   Zeng, Jingyao ^a   Zhang, Zhewen ^a   Wang, Jinyue ^a   Shi, Shuo ^a   Zhang, Yadong ^a   Pan, Mengyu ^a   Zou, Dong ^a   Song, Shuhui ^a   Xia, Lin ^a   Wang, Zhennan ^a   Li, Man ^a   Niu, Guangyi ^a   Zhang, Yang ^a   Sheng, Xin ^a   Lu, Mingming ^a   Wang, Qi ^a   Xiao, Jingfa ^a   Li, Mengwei ^a   Sun, Shixiang ^a   Li, Rujiao ^a   Yu, Chunlei ^a   Wang, Guangyu ^a   Yin, Hongyan ^a   Chen, Huanxin ^a   Sun, Yubin ^a   Yu, Lei ^a   Zhai, Shuang ^a   Sun, Mingyuan ^a   Zhang, Zhang ^a   Zhao, Wenming ^a   Bao, Yiming ^a   Wang, Yanqing ^a   Gao, Feng ^a   more..

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; BIG SEARCH; BIOBANK; BIOCODE DATABASE; BIOINFORMATICS; BIOPROJECT DATABASE; BIOSAMPLE DATABASE; COMPUTER SECURITY; DATA PROCESSING; DNA METHYLATION; GENE EXPRESSION NEBULAS; GENE EXPRESSION PROFILING; GENE SEQUENCE; GENETIC DATABASE; GENETIC VARIATION; GENOME SEQUENCE ARCHIVE; GENOME VARIATION MAP; GENOME WAREHOUSE; GENOMICS; INFORMATION RETRIEVAL; INFORMATION STORAGE; INTERNET; MEDICAL RESEARCH; METHYLATION BANK; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SCIENCE WIKIS; SEARCH ENGINE; ANIMAL; BIOLOGY; CHINA; FACTUAL DATABASE; KNOWLEDGE BASE; TRENDS;

TRANSCRIPTOME;

ANIMALS; BEIJING; BIG DATA; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DATABASES, GENETIC; DNA METHYLATION; GENETIC VARIATION; GENOMICS; INTERNET; KNOWLEDGE BASES; SEARCH ENGINE; TRANSCRIPTOME;

EID: 85040996048     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx897     Document Type: Article

References (30)

1. BIG Data Center Members. (2017) The BIG Data Center: from deposition to integration to translation. Nucleic Acids Res., 45, D18-D24.
2. Collins,F.S. and Varmus,H. (2015) A new initiative on precision medicine. N. Engl. J. Med., 372, 793-795.
3. Taylor,P.N., Porcu,E., Chew,S., Campbell,P.J., Traglia,M., Brown,S.J., Mullin,B.H., Shihab,H.A., Min,J., Walter,K. et al. (2015) Whole-genome sequence-based analysis of thyroid function. Nat. Commun., 6, 5681.
4. Cyranoski,D. (2016) China embraces precision medicine on a massive scale. Nature, 529, 9-10.
5. Li,H. (2016) Cancer precision medicine in China. Genomics Proteomics Bioinformatics, 14, 325-328.
6. Bouchie,A. (2016) White House unveils National Microbiome Initiative. Nat. Biotechnol., 34, 580.
7. Bustin,S.A., Benes,V., Nolan,T. and Pfaffl,M.W. (2005) Quantitative real-time RT-PCR-A perspective. J. Mol. Endocrinol., 34, 597-601.
8. Mestdagh,P., Van Vlierberghe,P., De Weer,A., Muth,D., Westermann,F., Speleman,F. and Vandesompele,J. (2009) A novel and universal method for microRNA RT-qPCR data normalization. Genome Biol., 10, R64.
9. Pfaffl,M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res., 29, e45.
10. Zhang,H.M., Liu,T., Liu,C.J., Song,S., Zhang,X., Liu,W., Jia,H., Xue,Y. and Guo,A.Y. (2015) AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic Acids Res., 43, D76-D81.
11. Ullah,S., Lin,S., Xu,Y., Deng,W., Ma,L., Zhang,Y., Liu,Z. and Xue,Y. (2016) dbPAF: an integrative database of protein phosphorylation in animals and fungi. Scientific Rep., 6, 23534.
12. Luo,H., Lin,Y., Gao,F., Zhang,C.T. and Zhang,R. (2014) DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements. Nucleic Acids Res., 42, D574-D580.
13. Gao,F., Luo,H. and Zhang,C.T. (2013) DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes. Nucleic Acids Res., 41, D90-D93.
14. Chen,G., Wang,Z., Wang,D., Qiu,C., Liu,M., Chen,X., Zhang,Q., Yan,G. and Cui,Q. (2013) LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res., 41, D983-D986.
15. Gong,J., Liu,W., Zhang,J., Miao,X. and Guo,A.Y. (2015) lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. Nucleic Acids Res., 43, D181-D186.
16. Xu,H., Zhou,J., Lin,S., Deng,W., Zhang,Y. and Xue,Y. (2017) PLMD: an updated data resource of protein lysine modifications. J. Genet. Genomics, 44, 243-250.
17. NCBI Resource Coordinators. (2017) Database Resources of the National Center for Biotechnology Information. Nucleic Acids Res., 45, D12-D17.
18. Tang,C., Yang,M., Fang,Y., Luo,Y., Gao,S., Xiao,X., An,Z., Zhou,B., Zhang,B., Tan,X. et al. (2016) The rubber tree genome reveals new insights into rubber production and species adaptation. Nat. Plants, 2, 16073.
19. Landrum,M.J., Lee,J.M., Benson,M., Brown,G., Chao,C., Chitipiralla,S., Gu,B., Hart,J., Hoffman,D., Hoover,J. et al. (2016) ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Res., 44, D862-D868.
20. MacArthur,J., Bowler,E., Cerezo,M., Gil,L., Hall,P., Hastings,E., Junkins,H., McMahon,A.,Milano,A., Morales,J. et al. (2017) The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Res., 45, D896-D901.
21. Amberger,J.S., Bocchini,C.A., Schiettecatte,F., Scott,A.F. and Hamosh,A. (2015) OMIM.org: Online Mendelian Inheritance in Man (OMIM(R)), an online catalog of human genes and genetic disorders. Nucleic Acids Res., 43, D789-D798.
22. Sheng,X., Wu,J., Sun,Q., Li,X., Xian,F., Sun,M., Fang,W., Chen,M., Yu,J. and Xiao,J. (2017) MTD: a mammalian transcriptomic database to explore gene expression and regulation. Brief. Bioinformatics, 18, 28-36.
23. Xia,L., Zou,D., Sang,J., Xu,X., Yin,H., Li,M., Wu,S., Hu,S., Hao,L. and Zhang,Z. (2017) Rice Expression Database (RED): an integrated RNA-Seq-derived gene expression database for rice. J. Genet. Genomics, 44, 235-241.
24. Zhang,Z., Hu,S.N., He,H., Zhang,H.Y., Chen,F., Zhao,W.M., Xiao,J.F., Chen,L.L., Xue,Y., Wang,X.F. et al. (2016) Information Commons for Rice (IC4R). Nucleic Acids Res., 44, D1172-D1180.
25. Zou,D., Sun,S., Li,R., Liu,J., Zhang,J. and Zhang,Z. (2015) MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data. Nucleic Acids Res., 43, D54-D58.
26. Ma,L.N., Li,A., Zou,D., Xu,X.J., Xia,L., Yu,J., Bajic,V.B. and Zhang,Z. (2015) LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res., 43, D187-D192.
27. Zhang,Z., Sang,J., Ma,L., Wu,G., Wu,H., Huang,D., Zou,D., Liu,S., Li,A., Hao,L. et al. (2013) RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res., 42, D1222-1228.
28. Dai,L., Xu,C., Tian,M., Sang,J., Zou,D., Li,A., Liu,G., Chen,F., Wu,J., Xiao,J. et al. (2013) Community intelligence in knowledge curation: an application to managing scientific nomenclature. PLoS One, 8, e56961.
29. Zhao,D.,Wu,J., Zhou,Y., Gong,W., Xiao,J. and Yu,J. (2012) WikiCell: a unified resource platform for human transcriptomics research. OMICS, 16, 357-362.
30. Dai,L., Tian,M., Wu,J., Xiao,J., Wang,X., Townsend,J.P. and Zhang,Z. (2013) AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics, 29, 1837-1839.