메뉴 건너뛰기




Volumn 46, Issue D1, 2018, Pages D100-D105

EVLncRNAs: A manually curated database for long non-coding RNAs validated by low-throughput experiments

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA;

EID: 85040948177     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx677     Document Type: Article
Times cited : (64)

References (38)
  • 2
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium,E.P., Dunham,I. and Kundaje,A. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Consortium, E.P.1    Dunham, I.2    Kundaje, A.3
  • 3
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • Ponting,C.P., Oliver,P.L. and Reik,W. (2009) Evolution and functions of long noncoding RNAs. Cell, 136, 629-641.
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 4
    • 39749110083 scopus 로고    scopus 로고
    • Small non-coding RNAs in animal development
    • Stefani,G. and Slack,F.J. (2008) Small non-coding RNAs in animal development. Nat. Rev. Mol. Cell Biol., 9, 219-230.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 219-230
    • Stefani, G.1    Slack, F.J.2
  • 5
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew,R.W. and Sontheimer,E.J. (2009) Origins and mechanisms of miRNAs and siRNAs. Cell, 136, 642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 7
    • 0026489906 scopus 로고
    • The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
    • Brockdorff,N., Ashworth,A., Kay,G.F., McCabe,V.M., Norris,D.P., Cooper,P.J., Swift,S. and Rastan,S. (1992) The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell, 71, 515-526.
    • (1992) Cell , vol.71 , pp. 515-526
    • Brockdorff, N.1    Ashworth, A.2    Kay, G.F.3    McCabe, V.M.4    Norris, D.P.5    Cooper, P.J.6    Swift, S.7    Rastan, S.8
  • 8
    • 60349120914 scopus 로고    scopus 로고
    • Long non-coding RNAs: Insights into functions
    • Mercer,T.R., Dinger,M.E. and Mattick,J.S. (2009) Long non-coding RNAs: insights into functions. Nat. Rev. Genet., 10, 155-159.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 155-159
    • Mercer, T.R.1    Dinger, M.E.2    Mattick, J.S.3
  • 11
    • 79953888460 scopus 로고    scopus 로고
    • The functional role of long non-coding RNA in human carcinomas
    • Gibb,E.A., Brown,C.J. and Lam,W.L. (2011) The functional role of long non-coding RNA in human carcinomas. Mol. Cancer, 10, 38.
    • (2011) Mol. Cancer , vol.10 , pp. 38
    • Gibb, E.A.1    Brown, C.J.2    Lam, W.L.3
  • 12
    • 84874999379 scopus 로고    scopus 로고
    • MiRNAs and long noncoding RNAs as biomarkers in human diseases
    • Van Roosbroeck,K., Pollet,J. and Calin,G.A. (2013) miRNAs and long noncoding RNAs as biomarkers in human diseases. Exp. Rev. Mol. Diagn., 13, 183-204.
    • (2013) Exp. Rev. Mol. Diagn. , vol.13 , pp. 183-204
    • Van Roosbroeck, K.1    Pollet, J.2    Calin, G.A.3
  • 15
    • 84941702202 scopus 로고    scopus 로고
    • Computational approaches towards understanding human long non-coding RNA biology
    • Jalali,S., Kapoor,S., Sivadas,A., Bhartiya,D. and Scaria,V. (2015) Computational approaches towards understanding human long non-coding RNA biology. Bioinformatics, 31, 2241-2251.
    • (2015) Bioinformatics , vol.31 , pp. 2241-2251
    • Jalali, S.1    Kapoor, S.2    Sivadas, A.3    Bhartiya, D.4    Scaria, V.5
  • 16
    • 84908123944 scopus 로고    scopus 로고
    • Databases for lncRNAs: A comparative evaluation of emerging tools
    • Fritah,S., Niclou,S.P. and Azuaje,F. (2014) Databases for lncRNAs: a comparative evaluation of emerging tools. RNA, 20, 1655-1665.
    • (2014) RNA , vol.20 , pp. 1655-1665
    • Fritah, S.1    Niclou, S.P.2    Azuaje, F.3
  • 21
    • 84964777775 scopus 로고    scopus 로고
    • NPInter v3.0: An upgraded database of noncoding RNA-associated interactions
    • Hao,Y., Wu,W., Li,H., Yuan,J., Luo,J., Zhao,Y. and Chen,R. (2016) NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. Database, 2016, baw057.
    • (2016) Database , vol.2016 , pp. baw057
    • Hao, Y.1    Wu, W.2    Li, H.3    Yuan, J.4    Luo, J.5    Zhao, Y.6    Chen, R.7
  • 24
    • 84976883041 scopus 로고    scopus 로고
    • Lnc2Cancer: A manually curated database of experimentally supported lncRNAs associated with various human cancers
    • Ning,S., Zhang,J.,Wang,P., Zhi,H.,Wang,J., Liu,Y., Gao,Y., Guo,M., Yue,M. and Wang,L. (2016) Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. Nucleic Acids Res., 44, D980-D985.
    • (2016) Nucleic Acids Res. , vol.44 , pp. D980-D985
    • Ning, S.1    Zhang, J.2    Wang, P.3    Zhi, H.4    Wang, J.5    Liu, Y.6    Gao, Y.7    Guo, M.8    Yue, M.9    Wang, L.10
  • 25
    • 85019835340 scopus 로고    scopus 로고
    • LncRInter: A database of experimentally validated long non-coding RNA interaction
    • Liu,C.-J., Gao,C., Ma,Z., Cong,R., Zhang,Q. and Guo,A.-Y. lncRInter: a database of experimentally validated long non-coding RNA interaction. J. Genet. Genomics, 44, 265-268.
    • J. Genet. Genomics , vol.44 , pp. 265-268
    • Liu, C.-J.1    Gao, C.2    Ma, Z.3    Cong, R.4    Zhang, Q.5    Guo, A.-Y.6
  • 26
    • 84941934451 scopus 로고    scopus 로고
    • PLNlncRbase: A resource for experimentally identified lncRNAs in plants
    • Xuan,H., Zhang,L., Liu,X., Han,G., Li,J., Li,X., Liu,A., Liao,M. and Zhang,S. (2015) PLNlncRbase: a resource for experimentally identified lncRNAs in plants. Gene, 573, 328-332.
    • (2015) Gene , vol.573 , pp. 328-332
    • Xuan, H.1    Zhang, L.2    Liu, X.3    Han, G.4    Li, J.5    Li, X.6    Liu, A.7    Liao, M.8    Zhang, S.9
  • 27
    • 84875810883 scopus 로고    scopus 로고
    • Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis
    • Yang,F., Huo,X.-s., Yuan,S.-x., Zhang,L., Zhou,W.-p., Wang,F. and Sun,S.-h. (2013) Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis. Mol. Cell, 49, 1083-1096.
    • (2013) Mol. Cell , vol.49 , pp. 1083-1096
    • Yang, F.1    Huo, X.-S.2    Yuan, S.-X.3    Zhang, L.4    Zhou, W.-P.5    Wang, F.6    Sun, S.-H.7
  • 28
    • 80055046798 scopus 로고    scopus 로고
    • Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans
    • Yang,F., Zhang,L., Huo,X.s., Yuan,J.H., Xu,D., Yuan,S.X., Zhu,N., Zhou,W.P., Yang,G.S. and Wang,Y.Z. (2011) Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans. Hepatology, 54, 1679-1689.
    • (2011) Hepatology , vol.54 , pp. 1679-1689
    • Yang, F.1    Zhang, L.2    Huo, S.X.3    Yuan, J.H.4    Xu, D.5    Yuan, S.X.6    Zhu, N.7    Zhou, W.P.8    Yang, G.S.9    Wang, Y.Z.10
  • 30
    • 84899939074 scopus 로고    scopus 로고
    • Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus
    • Xiang,J.-F., Yin,Q.-F., Chen,T., Zhang,Y., Zhang,X.-O.,Wu,Z., Zhang,S.,Wang,H.-B., Ge,J., Lu,X. et al. (2014) Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Res., 24, 513-531.
    • (2014) Cell Res. , vol.24 , pp. 513-531
    • Xiang, J.-F.1    Yin, Q.-F.2    Chen, T.3    Zhang, Y.4    Zhang, X.-O.5    Wu, Z.6    Zhang, S.7    Wang, H.-B.8    Ge, J.9    Lu, X.10
  • 31
    • 84876311383 scopus 로고    scopus 로고
    • Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma
    • Yang,F., Xue,X., Bi,J., Zheng,L., Zhi,K., Gu,Y. and Fang,G. (2013) Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma. J. Cancer Res. Clin. Oncol., 139, 437-445.
    • (2013) J. Cancer Res. Clin. Oncol. , vol.139 , pp. 437-445
    • Yang, F.1    Xue, X.2    Bi, J.3    Zheng, L.4    Zhi, K.5    Gu, Y.6    Fang, G.7
  • 35
    • 85016103144 scopus 로고    scopus 로고
    • Database resources of the national center for biotechnology information
    • NCBI Resource Coordinators
    • NCBI Resource Coordinators (2017) Database resources of the national center for biotechnology information. Nucleic Acids Res., 45, D12-D17.
    • (2017) Nucleic Acids Res. , vol.45 , pp. D12-D17
  • 37
    • 85016158577 scopus 로고    scopus 로고
    • COME: A robust coding potential calculation tool for lncRNA identification and characterization based on multiple features
    • Hu,L., Xu,Z., Hu,B. and Lu,Z.J. (2017) COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features. Nucleic Acids Res., 45, e2.
    • (2017) Nucleic Acids Res. , vol.45 , pp. e2
    • Hu, L.1    Xu, Z.2    Hu, B.3    Lu, Z.J.4
  • 38
    • 34547582418 scopus 로고    scopus 로고
    • CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
    • Kong,L., Zhang,Y., Ye,Z.-Q., Liu,X.-Q., Zhao,S.-Q., Wei,L. and Gao,G. (2007) CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res., 35, W345-W349.
    • (2007) Nucleic Acids Res. , vol.35 , pp. W345-W349
    • Kong, L.1    Zhang, Y.2    Ye, Z.-Q.3    Liu, X.-Q.4    Zhao, S.-Q.5    Wei, L.6    Gao, G.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.