-
1
-
-
83755186465
-
Linkage of gut microbiome with cognition in hepatic encephalopathy
-
Bajaj, J.S., Ridlon, J.M., Hylemon, P.B., Thacker, L.R., Heuman, D.M., Smith, S., Sikaroodi, M., Gillevet, P.M., Linkage of gut microbiome with cognition in hepatic encephalopathy. Am. J. Physiol. Gastrointest. Liver Physiol. 302 (2012), G168–G175.
-
(2012)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.302
, pp. G168-G175
-
-
Bajaj, J.S.1
Ridlon, J.M.2
Hylemon, P.B.3
Thacker, L.R.4
Heuman, D.M.5
Smith, S.6
Sikaroodi, M.7
Gillevet, P.M.8
-
2
-
-
85048346028
-
Alterations in gut microbial function following liver transplant
-
Bajaj, J.S., Kakiyama, G., Cox, I.J., Nittono, H., Takei, H., White, M., Fagan, A., Gavis, E.A., Heuman, D.M., Gilles, H.C., et al. Alterations in gut microbial function following liver transplant. Liver Transpl. 24 (2018), 752–761.
-
(2018)
Liver Transpl.
, vol.24
, pp. 752-761
-
-
Bajaj, J.S.1
Kakiyama, G.2
Cox, I.J.3
Nittono, H.4
Takei, H.5
White, M.6
Fagan, A.7
Gavis, E.A.8
Heuman, D.M.9
Gilles, H.C.10
-
3
-
-
84865007362
-
The nonribosomal synthesis of diketopiperazines in tRNA-dependent cyclodipeptide synthease pathways
-
Belin, P., Moutiez, M., Lautru, S., Seguin, J., Pernodet, J.L., Gondry, M., The nonribosomal synthesis of diketopiperazines in tRNA-dependent cyclodipeptide synthease pathways. Nat. Prod. Rep. 29 (2012), 961–979.
-
(2012)
Nat. Prod. Rep.
, vol.29
, pp. 961-979
-
-
Belin, P.1
Moutiez, M.2
Lautru, S.3
Seguin, J.4
Pernodet, J.L.5
Gondry, M.6
-
4
-
-
84925500413
-
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
-
Buffie, C.G., Bucci, V., Stein, R.R., McKenney, P.T., Ling, L., Gobourne, A., No, D., Liu, H., Kinnebrew, M., Viale, A., et al. Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature 517 (2015), 205–208.
-
(2015)
Nature
, vol.517
, pp. 205-208
-
-
Buffie, C.G.1
Bucci, V.2
Stein, R.R.3
McKenney, P.T.4
Ling, L.5
Gobourne, A.6
No, D.7
Liu, H.8
Kinnebrew, M.9
Viale, A.10
-
5
-
-
79960714764
-
Characterization of fecal microbial communities in patients with liver cirrhosis
-
Chen, Y., Yang, F., Lu, H., Wang, B., Chen, Y., Lei, D., Wang, Y., Zhu, B., Li, L., Characterization of fecal microbial communities in patients with liver cirrhosis. Hepatology 54 (2011), 562–572.
-
(2011)
Hepatology
, vol.54
, pp. 562-572
-
-
Chen, Y.1
Yang, F.2
Lu, H.3
Wang, B.4
Chen, Y.5
Lei, D.6
Wang, Y.7
Zhu, B.8
Li, L.9
-
6
-
-
84939567798
-
A biosynthetic pathway for a prominent class of microbiota-derived bile acids
-
Devlin, A.S., Fischbach, M.A., A biosynthetic pathway for a prominent class of microbiota-derived bile acids. Nat. Chem. Biol. 11 (2015), 685–690.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 685-690
-
-
Devlin, A.S.1
Fischbach, M.A.2
-
7
-
-
58849137478
-
Faecal steroid excretion in humans is affected by calcium supplementation and shows gender-specific differences
-
Ditscheid, B., Keller, S., Jahreis, G., Faecal steroid excretion in humans is affected by calcium supplementation and shows gender-specific differences. Eur. J. Nutr. 48 (2009), 22–30.
-
(2009)
Eur. J. Nutr.
, vol.48
, pp. 22-30
-
-
Ditscheid, B.1
Keller, S.2
Jahreis, G.3
-
8
-
-
0017772177
-
The Van urk-Salkowski reagent – a sensitive and specific chromogenic reagent for silica gel thin-layer chromatographic detection and identification for indole derivatives
-
Ehmann, A., The Van urk-Salkowski reagent – a sensitive and specific chromogenic reagent for silica gel thin-layer chromatographic detection and identification for indole derivatives. J. Chromatogr. 132 (1977), 267–276.
-
(1977)
J. Chromatogr.
, vol.132
, pp. 267-276
-
-
Ehmann, A.1
-
9
-
-
85019034837
-
Impact of gut microbiota-mediated bile acid metabolism on the solubilization capacity of bile salt micelles and drug solubility
-
Enright, E.F., Joyce, S.A., Gahan, C.G., Griffin, B.T., Impact of gut microbiota-mediated bile acid metabolism on the solubilization capacity of bile salt micelles and drug solubility. Mol. Pharm. 14 (2017), 1251–1263.
-
(2017)
Mol. Pharm.
, vol.14
, pp. 1251-1263
-
-
Enright, E.F.1
Joyce, S.A.2
Gahan, C.G.3
Griffin, B.T.4
-
10
-
-
84930711500
-
The tRNA-dependent biosynthesis of modified cyclic dipeptides
-
Giessen, T.W., Marahiel, M.A., The tRNA-dependent biosynthesis of modified cyclic dipeptides. Int. J. Mol. Sci. 15 (2014), 14610–14631.
-
(2014)
Int. J. Mol. Sci.
, vol.15
, pp. 14610-14631
-
-
Giessen, T.W.1
Marahiel, M.A.2
-
11
-
-
0036727242
-
Isolation of antibiotics turbomycin a and b from a metagenomics library of soil microbial DNA
-
Gillespie, D.E., Brady, S.F., Bettermann, A.D., Cianciotto, N.P., Liles, M.R., Rondon, M.R., Clardy, J., Goodman, R.M., Handelsman, J., Isolation of antibiotics turbomycin a and b from a metagenomics library of soil microbial DNA. Appl. Environ. Microbiol. 68 (2002), 4301–4306.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4301-4306
-
-
Gillespie, D.E.1
Brady, S.F.2
Bettermann, A.D.3
Cianciotto, N.P.4
Liles, M.R.5
Rondon, M.R.6
Clardy, J.7
Goodman, R.M.8
Handelsman, J.9
-
12
-
-
85000415143
-
Non-ribosomal peptide synthases from Pseudomonas aeruginosa play a role in cyclodipeptide biosynthesis, quorum-sensing regulation, and root development in a plant host
-
González, O., Ortíz-Castro, R., Díaz-Pérez, C., Diaz-Perez, A.L., Magañas-Dueñas, V., López-Bucio, J., Campos-García, J., Non-ribosomal peptide synthases from Pseudomonas aeruginosa play a role in cyclodipeptide biosynthesis, quorum-sensing regulation, and root development in a plant host. Microb. Ecol. 73 (2017), 616–629.
-
(2017)
Microb. Ecol.
, vol.73
, pp. 616-629
-
-
González, O.1
Ortíz-Castro, R.2
Díaz-Pérez, C.3
Diaz-Perez, A.L.4
Magañas-Dueñas, V.5
López-Bucio, J.6
Campos-García, J.7
-
13
-
-
0024318186
-
Quantitative estimation of the hydrophilic-hydrophobic balance of mixed bile salt solutions
-
Heuman, D.M., Quantitative estimation of the hydrophilic-hydrophobic balance of mixed bile salt solutions. J. Lipid Res. 30 (1989), 719–730.
-
(1989)
J. Lipid Res.
, vol.30
, pp. 719-730
-
-
Heuman, D.M.1
-
14
-
-
70350110294
-
High-fat diet determines the composition of the murine gut microbiome independently of obesity
-
Hildebrandt, M.A., Hoffmann, C.S., Sherrill-Mix, A., Keilbaugh, S.A., Hamady, M., Chen, Y.Y., Knight, R., Ahima, R., Bushman, S.F., Wu, G.D., High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology 237 (2009), 1716–1724.
-
(2009)
Gastroenterology
, vol.237
, pp. 1716-1724
-
-
Hildebrandt, M.A.1
Hoffmann, C.S.2
Sherrill-Mix, A.3
Keilbaugh, S.A.4
Hamady, M.5
Chen, Y.Y.6
Knight, R.7
Ahima, R.8
Bushman, S.F.9
Wu, G.D.10
-
15
-
-
33644867569
-
Regulation of antibacterial defense in the small intestine by the nuclear bile acid receptor
-
Inagaki, T., Moschetta, A., Lee, Y.-K., Peng, L., Zhao, P., Downes, M., Yu, R.T., Shelton, J.M., Richardson, J.H., Repa, J.J., et al. Regulation of antibacterial defense in the small intestine by the nuclear bile acid receptor. Proc. Natl. Acad. Sci. U S A 103 (2006), 3920–3925.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 3920-3925
-
-
Inagaki, T.1
Moschetta, A.2
Lee, Y.-K.3
Peng, L.4
Zhao, P.5
Downes, M.6
Yu, R.T.7
Shelton, J.M.8
Richardson, J.H.9
Repa, J.J.10
-
16
-
-
80054862011
-
Bile acid is a host factor that regulates the composition of the cecal microbiota in rats
-
Islam, K.B., Fukiya, S., Hagio, M., Fujii, M.N., Ishizuka, S., Ooka, T., Ogura, Y., Hayashi, T., Yokota, A., Bile acid is a host factor that regulates the composition of the cecal microbiota in rats. Gastroenterology 141 (2011), 1773–1781.
-
(2011)
Gastroenterology
, vol.141
, pp. 1773-1781
-
-
Islam, K.B.1
Fukiya, S.2
Hagio, M.3
Fujii, M.N.4
Ishizuka, S.5
Ooka, T.6
Ogura, Y.7
Hayashi, T.8
Yokota, A.9
-
17
-
-
84901697873
-
Colonic inflammation and secondary bile acids in alcoholic cirrhosis
-
Kakiyama, G., Hylemon, P.B., Zhou, H., Pankak, W.M., Heuman, D.M., Kang, D.J., Takei, H., Nittono, H., Ridlon, J.M., Fuchs, M., et al. Colonic inflammation and secondary bile acids in alcoholic cirrhosis. Am. J. Physiol. Gastrointest. Liver Physiol. 306 (2014), G929–G937.
-
(2014)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.306
, pp. G929-G937
-
-
Kakiyama, G.1
Hylemon, P.B.2
Zhou, H.3
Pankak, W.M.4
Heuman, D.M.5
Kang, D.J.6
Takei, H.7
Nittono, H.8
Ridlon, J.M.9
Fuchs, M.10
-
18
-
-
84938404369
-
Isolation of an algicide from a marine bacterium and its effects against the toxic dinoflagellate Alexandrium catenella and other harmful algal blooms species
-
Kim, Y.S., Son, H.J., Jeong, S., Isolation of an algicide from a marine bacterium and its effects against the toxic dinoflagellate Alexandrium catenella and other harmful algal blooms species. J. Microbiol. 53 (2015), 511–517.
-
(2015)
J. Microbiol.
, vol.53
, pp. 511-517
-
-
Kim, Y.S.1
Son, H.J.2
Jeong, S.3
-
19
-
-
77957988127
-
The role of toxin A and toxin B in Clostridium difficile infection
-
Kuehner, S.A., Cartman, S.T., Heap, J.T., Kelly, M.L., Cockayne, A., Minton, N.P., The role of toxin A and toxin B in Clostridium difficile infection. Nature 467 (2010), 711–713.
-
(2010)
Nature
, vol.467
, pp. 711-713
-
-
Kuehner, S.A.1
Cartman, S.T.2
Heap, J.T.3
Kelly, M.L.4
Cockayne, A.5
Minton, N.P.6
-
20
-
-
84960354427
-
Role of indole as an interspecies and interkingdom signaling molecule
-
Lee, J.H., Wood, T.K., Lee, J., Role of indole as an interspecies and interkingdom signaling molecule. Trends Microbiol. 23 (2015), 707–718.
-
(2015)
Trends Microbiol.
, vol.23
, pp. 707-718
-
-
Lee, J.H.1
Wood, T.K.2
Lee, J.3
-
21
-
-
84923775846
-
Burden of Clostridium difficile infection in the United States
-
Lessa, F.C., Mu, Y., Bamberg, W.M., Beldavs, Z.G., Dumyati, G.K., Dunn, J.R., Farley, M.M., Holzbauer, S.M., Meek, J.I., Phipps, E.C., et al. Burden of Clostridium difficile infection in the United States. N. Engl. J. Med. 372 (2015), 825–834.
-
(2015)
N. Engl. J. Med.
, vol.372
, pp. 825-834
-
-
Lessa, F.C.1
Mu, Y.2
Bamberg, W.M.3
Beldavs, Z.G.4
Dumyati, G.K.5
Dunn, J.R.6
Farley, M.M.7
Holzbauer, S.M.8
Meek, J.I.9
Phipps, E.C.10
-
22
-
-
80455173556
-
Host and pathogen factors for Clostridium difficile Infection and colonization
-
Loo, V.G., Bourgault, A.M., Poirier, L., Lamothe, F., Michaud, S., Turgeon, N., Toye, B., Beaudoin, A., Frost, E.H., Gilca, R., et al. Host and pathogen factors for Clostridium difficile Infection and colonization. N. Engl. J. Med. 365 (2011), 1693–1703.
-
(2011)
N. Engl. J. Med.
, vol.365
, pp. 1693-1703
-
-
Loo, V.G.1
Bourgault, A.M.2
Poirier, L.3
Lamothe, F.4
Michaud, S.5
Turgeon, N.6
Toye, B.7
Beaudoin, A.8
Frost, E.H.9
Gilca, R.10
-
23
-
-
80055115172
-
Antibiotic treatment of Clostridium difficile-associated diarrhea in adults
-
Nelson, R.L., Suda, K.J., Evans, C.T., Antibiotic treatment of Clostridium difficile-associated diarrhea in adults. Cochrane Database Syst. Rev, 2017, CD004610.
-
(2017)
Cochrane Database Syst. Rev
, pp. CD004610
-
-
Nelson, R.L.1
Suda, K.J.2
Evans, C.T.3
-
24
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
Ridlon, J.M., Kang, D.J., Hylemon, P.B., Bile salt biotransformations by human intestinal bacteria. J. Lipid Res. 47 (2006), 241–259.
-
(2006)
J. Lipid Res.
, vol.47
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.J.2
Hylemon, P.B.3
-
25
-
-
84883442887
-
Cirrhosis, bile acids and gut microbiota: unraveling a complex relationship
-
Ridlon, J.M., Alves, J.M., Hylemon, P.B., Bajaj, J.S., Cirrhosis, bile acids and gut microbiota: unraveling a complex relationship. Gut Microbes 4 (2013), 382–387.
-
(2013)
Gut Microbes
, vol.4
, pp. 382-387
-
-
Ridlon, J.M.1
Alves, J.M.2
Hylemon, P.B.3
Bajaj, J.S.4
-
26
-
-
67649391053
-
Clostridium difficile infection: new developments in epidemiology and pathogenesis
-
Rupnik, M., Wilcox, M.H., Gerding, D.N., Clostridium difficile infection: new developments in epidemiology and pathogenesis. Nat. Rev. Microbiol. 7 (2009), 526–536.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 526-536
-
-
Rupnik, M.1
Wilcox, M.H.2
Gerding, D.N.3
-
27
-
-
77954292472
-
The synergistic antibacterial activity of 1-acetyl-β-carboline and β-lactams against methicillin-resistant Staphylococcus aureus (MRSA)
-
Shin, H.J., Lee, H.-S., Lee, D.-S., The synergistic antibacterial activity of 1-acetyl-β-carboline and β-lactams against methicillin-resistant Staphylococcus aureus (MRSA). J. Microbiol. Biotechnol. 20 (2010), 501–505.
-
(2010)
J. Microbiol. Biotechnol.
, vol.20
, pp. 501-505
-
-
Shin, H.J.1
Lee, H.-S.2
Lee, D.-S.3
-
28
-
-
85046658322
-
BaiCD gene cluster abundance is negatively correlated with Clostridium difficile infection
-
Solbach, P., Chhatwal, P., Woltemate, S., Tacconelli, E., Buhl, M., Gerhard, M., Thoeringer, C.K., Vehreschild, M.J.G.T., Jazmati, N., Rupp, J., et al. BaiCD gene cluster abundance is negatively correlated with Clostridium difficile infection. PLoS One, 13, 2018, e0196977.
-
(2018)
PLoS One
, vol.13
, pp. e0196977
-
-
Solbach, P.1
Chhatwal, P.2
Woltemate, S.3
Tacconelli, E.4
Buhl, M.5
Gerhard, M.6
Thoeringer, C.K.7
Vehreschild, M.J.G.T.8
Jazmati, N.9
Rupp, J.10
-
29
-
-
41549142775
-
Bile salts and glycine as cogerminants for Clostridium difficile spores
-
Sorg, J.A., Sonenshein, A.L., Bile salts and glycine as cogerminants for Clostridium difficile spores. J. Bacteriol. 190 (2008), 2505–2512.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 2505-2512
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
30
-
-
77957337708
-
Inhibiting the initiation of Clostridium difficile spore germination using analogs of chenodeoxycholic acid, a bile acid
-
Sorg, J.A., Sonenshein, A.L., Inhibiting the initiation of Clostridium difficile spore germination using analogs of chenodeoxycholic acid, a bile acid. J. Bacteriol. 192 (2010), 4983–4990.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 4983-4990
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
31
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P.J., Ley, R.E., Mahowald, M.A., Magrini, V., Mardis, E.R., Gordon, J.L., An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444 (2006), 1027–1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.L.6
-
32
-
-
41849127118
-
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
Turnbaugh, P.J., Bäckhed, F., Fulton, L., Gordon, J.L., Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3 (2008), 213–223.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 213-223
-
-
Turnbaugh, P.J.1
Bäckhed, F.2
Fulton, L.3
Gordon, J.L.4
-
33
-
-
84873019302
-
Duodenal infusion of feces for recurrent Clostridium difficile
-
van Nood, E., Vrieze, A., Nieuwdorp, M., Fuentes, S., Zoetendal, E.G., de Vos, W.M., Visser, C.E., Kuijper, E.J., Bartelsman, J.F., Tijssen, J.G., et al. Duodenal infusion of feces for recurrent Clostridium difficile. N. Engl. J. Med. 368 (2013), 407–415.
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 407-415
-
-
van Nood, E.1
Vrieze, A.2
Nieuwdorp, M.3
Fuentes, S.4
Zoetendal, E.G.5
de Vos, W.M.6
Visser, C.E.7
Kuijper, E.J.8
Bartelsman, J.F.9
Tijssen, J.G.10
-
34
-
-
84894105226
-
Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection
-
Weingarden, A.R., Chen, C., Bobr, A., Yao, D., Lu, Y., Nelson, V.M., Sadowsky, M.J., Khoruts, A., Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection. Am. J. Physiol. Gastrointest. Liver Physiol. 306 (2014), G310–G319.
-
(2014)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.306
, pp. G310-G319
-
-
Weingarden, A.R.1
Chen, C.2
Bobr, A.3
Yao, D.4
Lu, Y.5
Nelson, V.M.6
Sadowsky, M.J.7
Khoruts, A.8
-
35
-
-
84986592707
-
Redefining the roles of the FtsZ-ring in bacterial cytokinesis
-
Xiao, J., Goley, E.D., Redefining the roles of the FtsZ-ring in bacterial cytokinesis. Curr. Opin. Microbiol. 34 (2015), 90–96.
-
(2015)
Curr. Opin. Microbiol.
, vol.34
, pp. 90-96
-
-
Xiao, J.1
Goley, E.D.2
-
36
-
-
84866040724
-
Is bile acid a determinant of the gut microbiota on a high-fat diet?
-
Yokota, A., Fukiya, S., Islam, K.B., Ooka, T., Ogura, Y., Hayashi, T., Hagio, M., Ishizuka, S., Is bile acid a determinant of the gut microbiota on a high-fat diet?. Gut Microbes 3 (2012), 455–459.
-
(2012)
Gut Microbes
, vol.3
, pp. 455-459
-
-
Yokota, A.1
Fukiya, S.2
Islam, K.B.3
Ooka, T.4
Ogura, Y.5
Hayashi, T.6
Hagio, M.7
Ishizuka, S.8
|