메뉴 건너뛰기




Volumn 19, Issue 1, 2018, Pages

Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities 06 Biological Sciences 0604 Genetics

Author keywords

Biohydrogen production; Comparative genomics; DSM 6285; Parageobacillus thermoglucosidasius; Water gas shift reaction

Indexed keywords

HYDROGEN; PROTEOME; BACTERIAL PROTEIN; CARBON MONOXIDE; HYDROGENASE; MULTIENZYME COMPLEX; NICKEL-IRON HYDROGENASE;

EID: 85058025337     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-018-5302-9     Document Type: Article
Times cited : (19)

References (41)
  • 1
    • 84992390987 scopus 로고    scopus 로고
    • Phylogenomic re-assessment of the thermophilic genus Geobacillus
    • 1:CAS:528:DC%2BC28Xhs1ajsLvM
    • Aliyu H, Lebre P, Blom J, Cowan D, De Maayer P. Phylogenomic re-assessment of the thermophilic genus Geobacillus. Syst Appl Microbiol. 2016;39:527-33.
    • (2016) Syst Appl Microbiol , vol.39 , pp. 527-533
    • Aliyu, H.1    Lebre, P.2    Blom, J.3    Cowan, D.4    De Maayer, P.5
  • 2
    • 84891619432 scopus 로고    scopus 로고
    • The Geobacillus paradox: Why is a thermophilic bacterial genus so prevalent on a mesophilic planet?
    • 1:CAS:528:DC%2BC2cXis1egsLw%3D
    • Zeigler DR. The Geobacillus paradox: why is a thermophilic bacterial genus so prevalent on a mesophilic planet? Microbiology. 2014;160:1-11.
    • (2014) Microbiology , vol.160 , pp. 1-11
    • Zeigler, D.R.1
  • 3
    • 84908084416 scopus 로고    scopus 로고
    • Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly variable target for improved hemicellulolysis
    • De Maayer P, Brumm PJ, Mead DA, Cowan DA. Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly variable target for improved hemicellulolysis. BMC Genomics. 2014;15:836.
    • (2014) BMC Genomics , vol.15 , pp. 836
    • De Maayer, P.1    Brumm, P.J.2    Mead, D.A.3    Cowan, D.A.4
  • 4
    • 85018946821 scopus 로고    scopus 로고
    • Identification and sequence analyses of novel lipase encoding novel thermophillic bacilli isolated from Armenian geothermal springs
    • Shahinyan G, Margaryan A, Panosyan H, Trchounian A. Identification and sequence analyses of novel lipase encoding novel thermophillic bacilli isolated from Armenian geothermal springs. BMC Microbiol. 2017;17:1-11.
    • (2017) BMC Microbiol , vol.17 , pp. 1-11
    • Shahinyan, G.1    Margaryan, A.2    Panosyan, H.3    Trchounian, A.4
  • 5
    • 84962859594 scopus 로고    scopus 로고
    • Purification and characterization of a new thermostable, Haloalkaline, solvent stable, and detergent compatible serine protease from Geobacillus toebii strain LBT 77
    • Thebti W, Riahi Y, Belhadj O. Purification and characterization of a new thermostable, Haloalkaline, solvent stable, and detergent compatible serine protease from Geobacillus toebii strain LBT 77. BioMed Res Int. 2016;2016:1-8.
    • (2016) BioMed Res Int. , vol.2016 , pp. 1-8
    • Thebti, W.1    Riahi, Y.2    Belhadj, O.3
  • 6
    • 70450221933 scopus 로고    scopus 로고
    • Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production
    • 1:CAS:528:DC%2BD1MXhtlCgt7jJ
    • Cripps RE, Eley K, Leak DJ, Taylor M, Todd M, Boakes S, Martin S, Atkinson T. Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production. Metab Eng. 2009;11:398-408.
    • (2009) Metab Eng , vol.11 , pp. 398-408
    • Cripps, R.E.1    Eley, K.2    Leak, D.J.3    Taylor, M.4    Todd, M.5    Boakes, S.6    Martin, S.7    Atkinson, T.8
  • 7
    • 84942410891 scopus 로고    scopus 로고
    • The genus Geobacillus and their biotechnological potential
    • Hussein AH, Lisokwska BK, Leak DJ. The genus Geobacillus and their biotechnological potential. Adv Appl Microbiol. 2015;92:1-49.
    • (2015) Adv Appl Microbiol , vol.92 , pp. 1-49
    • Hussein, A.H.1    Lisokwska, B.K.2    Leak, D.J.3
  • 9
    • 57149107409 scopus 로고    scopus 로고
    • Isolation of the phe-operon from G. Stearothermophilus comprising the phenol degradative meta-pathway genes and a novel transcriptional regulator
    • Omokoko B, Jäntges UK, Zimmermann M, Reiss M, Hartmeier W. Isolation of the phe-operon from G. stearothermophilus comprising the phenol degradative meta-pathway genes and a novel transcriptional regulator. BMC Microbiolo. 2008;8(1):197.
    • (2008) BMC Microbiolo , vol.8 , Issue.1 , pp. 197
    • Omokoko, B.1    Jäntges, U.K.2    Zimmermann, M.3    Reiss, M.4    Hartmeier, W.5
  • 11
    • 84940954017 scopus 로고    scopus 로고
    • Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath hot spring in Yellowstone National Park
    • 1:CAS:528:DC%2BC2MXisVWjurc%3D
    • Brumm P, Land ML, Hauser LJ, Jeffries CD, Chang YJ, Mcad DA. Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath hot spring in Yellowstone National Park. Bioenergy Res. 2015;8:1039-45.
    • (2015) Bioenergy Res , vol.8 , pp. 1039-1045
    • Brumm, P.1    Land, M.L.2    Hauser, L.J.3    Jeffries, C.D.4    Chang, Y.J.5    McAd, D.A.6
  • 13
    • 65649109694 scopus 로고    scopus 로고
    • Review of solutions to global warming, air pollution, and energy security
    • 1:CAS:528:DC%2BD1MXnsVSnsLg%3D
    • Jacobson MZ. Review of solutions to global warming, air pollution, and energy security. Energy Environ Sci. 2009;2:148.
    • (2009) Energy Environ Sci , vol.2 , pp. 148
    • Jacobson, M.Z.1
  • 14
    • 61749091429 scopus 로고    scopus 로고
    • Assessment of sustainability indicators for renewable energy technologies
    • Evans A, Strezov V, Evans JT. Assessment of sustainability indicators for renewable energy technologies. Renew Sust Energ Rev. 2009;13:1082-8.
    • (2009) Renew Sust Energ Rev , vol.13 , pp. 1082-1088
    • Evans, A.1    Strezov, V.2    Evans, J.T.3
  • 15
    • 68549134940 scopus 로고    scopus 로고
    • Hydrogen the fuel for 21st century
    • 1:CAS:528:DC%2BD1MXpvFyks7s%3D
    • Jain IP. Hydrogen the fuel for 21st century. Int J Hydrog Energy. 2009;34:7368-78.
    • (2009) Int J Hydrog Energy , vol.34 , pp. 7368-7378
    • Jain, I.P.1
  • 17
    • 84988353044 scopus 로고    scopus 로고
    • A comparative overview of hydrogen production processes
    • 1:CAS:528:DC%2BC28XhsFarurjL
    • Nikolaidis P, Poullikkas A. A comparative overview of hydrogen production processes. Renew Sust Energ Rev. 2017;67:597-611.
    • (2017) Renew Sust Energ Rev , vol.67 , pp. 597-611
    • Nikolaidis, P.1    Poullikkas, A.2
  • 18
    • 77951644817 scopus 로고    scopus 로고
    • Production of biofuels from synthesis gas using microbial catalysts
    • 1:CAS:528:DC%2BC3cXmtlGiur0%3D
    • Tirado-Acevedo O, Chinn MS, Grunden AM. Production of biofuels from synthesis gas using microbial catalysts. Adv Appl Microbiol. 2010;70:57-92.
    • (2010) Adv Appl Microbiol , vol.70 , pp. 57-92
    • Tirado-Acevedo, O.1    Chinn, M.S.2    Grunden, A.M.3
  • 19
    • 84874011652 scopus 로고    scopus 로고
    • Genome sequence-based species delimitation with confidence intervals and improved distance functions
    • Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics. 2013;14:1-14.
    • (2013) BMC Bioinformatics , vol.14 , pp. 1-14
    • Meier-Kolthoff, J.P.1    Auch, A.F.2    Klenk, H.P.3    Göker, M.4
  • 20
    • 84960373245 scopus 로고    scopus 로고
    • OrthoANI: An improved algorithm and software for calculating average nucleotide identity
    • 1:CAS:528:DC%2BC28XhvVyksr3O
    • Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol. 2016;66:1100-3.
    • (2016) Int J Syst Evol Microbiol , vol.66 , pp. 1100-1103
    • Lee, I.1    Ouk Kim, Y.2    Park, S.C.3    Chun, J.4
  • 22
    • 84938582898 scopus 로고    scopus 로고
    • OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
    • Emms DM, Kelly S. OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biol. 2015;16:157.
    • (2015) Genome Biol , vol.16 , pp. 157
    • Emms, D.M.1    Kelly, S.2
  • 23
    • 0033977298 scopus 로고    scopus 로고
    • Nickel transport systems in microorganisms
    • 1:CAS:528:DC%2BD3cXhslKlsLc%3D
    • Eitinger T, Mandrand-Berthelot M-A. Nickel transport systems in microorganisms. Arch of Microbiol. 2000;173:1-9.
    • (2000) Arch of Microbiol , vol.173 , pp. 1-9
    • Eitinger, T.1    Mandrand-Berthelot, M.-A.2
  • 24
    • 0032900982 scopus 로고    scopus 로고
    • Subunit II of Bacillus subtilis cytochrome c oxidase is a lipoprotein
    • 1:CAS:528:DyaK1MXmtlWgtg%3D%3D
    • Bengtsson J, Tjalsma H, Rivolta C, Hederstedt L (1999) Subunit II of Bacillus subtilis cytochrome c oxidase is a lipoprotein. J Bacteriol, 181: 685-688.
    • (1999) J Bacteriol , vol.181 , pp. 685-688
    • Bengtsson, J.1    Tjalsma, H.2    Rivolta, C.3    Hederstedt, L.4
  • 25
    • 22244488778 scopus 로고    scopus 로고
    • Expression, purification, and characterization of the CuA-cytochrome c domain from subunit II of the Bacillus subtilis cytochrome caa3 complex in Escherichia coli
    • Andrews S, Mattatall NR, Arnold D, Hill BC. Expression, purification, and characterization of the CuA-cytochrome c domain from subunit II of the Bacillus subtilis cytochrome caa3 complex in Escherichia coli. Protein Expr Purif. 2005;2:227-35.
    • (2005) Protein Expr Purif , vol.2 , pp. 227-235
    • Andrews, S.1    Mattatall, N.R.2    Arnold, D.3    Hill, B.C.4
  • 28
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010;5:e11147.
    • (2010) PLoS One , vol.5 , pp. e11147
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 29
    • 85058023919 scopus 로고    scopus 로고
    • Tfsitescan Accessed 20 Apr 2018.
    • Tfsitescan: http://www.ifti.org/Tfsitescan. Accessed 20 Apr 2018.
  • 30
    • 72249086599 scopus 로고    scopus 로고
    • ScoC regulates bacilysin production at the transcription level in Bacillus subtilis
    • 1:CAS:528:DC%2BD1MXhsVyrtrbL
    • Inaoka T, Wang G, Ochi K. ScoC regulates bacilysin production at the transcription level in Bacillus subtilis. Journal of Bacteriol. 2009;191:7367-71.
    • (2009) Journal of Bacteriol , vol.191 , pp. 7367-7371
    • Inaoka, T.1    Wang, G.2    Ochi, K.3
  • 31
    • 0025915507 scopus 로고
    • The transition state regulator Hpr of Bacillus subtilis is a DNA-binding protein
    • 1:CAS:528:DyaK3MXkvVyqsLc%3D
    • Kallio PT, Fagelson JE, Hoch JA, Strauch MA. The transition state regulator Hpr of Bacillus subtilis is a DNA-binding protein. J Biol Chem. 1991;266:13411-7.
    • (1991) J Biol Chem , vol.266 , pp. 13411-13417
    • Kallio, P.T.1    Fagelson, J.E.2    Hoch, J.A.3    Strauch, M.A.4
  • 32
    • 61449189818 scopus 로고    scopus 로고
    • Hag expression in Bacillus subtilis is both negatively and positively regulated by ScoC
    • 1:CAS:528:DC%2BD1MXht12rtL8%3D
    • Kodgire P, Rao KK. hag expression in Bacillus subtilis is both negatively and positively regulated by ScoC. Microbiology. 2009;155:142-9.
    • (2009) Microbiology , vol.155 , pp. 142-149
    • Kodgire, P.1    Rao, K.K.2
  • 39
    • 3242887157 scopus 로고    scopus 로고
    • CD-search: Protein domain annotations on the fly
    • Marchler-Bauer A, Bryant SH. CD-search: protein domain annotations on the fly. Nucleic Acids Res. 2004;32(W):327-31.
    • (2004) Nucleic Acids Res , vol.32 , Issue.W , pp. 327-331
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 40
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 1:CAS:528:DyaK2MXitlSgu74%3D
    • Thompson JD, Higgins DG, Gibson TJ. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22:4673-80.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 41
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
    • 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95-8.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.