메뉴 건너뛰기




Volumn 42, Issue 2, 2008, Pages 217-226

alkB homologs in thermophilic bacteria of the genus Geobacillus

Author keywords

alkB genes; Geobacillus; Homologs; Horizontal gene transfer; Thermophilic bacteria

Indexed keywords

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); GEOBACILLUS; NEGIBACTERIA; POSIBACTERIA; RHODOCOCCUS; RHODOCOCCUS ERYTHROPOLIS;

EID: 44449157840     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S0026893308020076     Document Type: Article
Times cited : (25)

References (39)
  • 2
    • 0033171433 scopus 로고    scopus 로고
    • Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains
    • Smits T.H., Rothlisberger M., Witholt B., van Beilen J.B. 1999. Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains. Environ. Microbiol. 1, 307-317.
    • (1999) Environ. Microbiol. , vol.1 , pp. 307-317
    • Smits, T.H.1    Rothlisberger, M.2    Witholt, B.3    Van Beilen, J.B.4
  • 3
    • 0036188547 scopus 로고    scopus 로고
    • Functional analysis of alkane hydroxylases from Gram-negative and Gram-positive bacteria
    • Smits T.H., Balada S.B., Witholt B., van Beilen J.B. 2002. Functional analysis of alkane hydroxylases from Gram-negative and Gram-positive bacteria. J. Bacteriol. 184, 1733-1742.
    • (2002) J. Bacteriol. , vol.184 , pp. 1733-1742
    • Smits, T.H.1    Balada, S.B.2    Witholt, B.3    Van Beilen, J.B.4
  • 5
    • 0033850347 scopus 로고    scopus 로고
    • Distribution of alkB genes within n-alkane-degrading bacteria
    • Vomberg A., Klinner U. 2000. Distribution of alkB genes within n-alkane-degrading bacteria. J. Appl. Microbiol. 89, 339-348.
    • (2000) J. Appl. Microbiol. , vol.89 , pp. 339-348
    • Vomberg, A.1    Klinner, U.2
  • 6
    • 18744416524 scopus 로고    scopus 로고
    • Alkane hydroxylase homologues in Gram-positive strains
    • van Beilen J.B., Smits T.H., Whyte L.G., et al. 2002. Alkane hydroxylase homologues in Gram-positive strains. Environ. Microbiol. 4, 676-682.
    • (2002) Environ. Microbiol. , vol.4 , pp. 676-682
    • Van Beilen, J.B.1    Smits, T.H.2    Whyte, L.G.3
  • 7
    • 0242669334 scopus 로고    scopus 로고
    • Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531
    • Whyte L.G., Smits T.H., Labbe D., Witholt B., Greer C.W., van Beilen J.B. 2002. Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl. Environ. Microbiol. 68, 5933-5942.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5933-5942
    • Whyte, L.G.1    Smits, T.H.2    Labbe, D.3    Witholt, B.4    Greer, C.W.5    Van Beilen, J.B.6
  • 10
    • 3242816006 scopus 로고    scopus 로고
    • A rapid and effective method of extracting fully intact RNA from thermophilic geobacilli that is suitable for gene expression analysis
    • Sharkey F.H., Banat I.M., Marchant R. 2004. A rapid and effective method of extracting fully intact RNA from thermophilic geobacilli that is suitable for gene expression analysis. Extremophiles. 8, 73-77.
    • (2004) Extremophiles. , vol.8 , pp. 73-77
    • Sharkey, F.H.1    Banat, I.M.2    Marchant, R.3
  • 11
    • 0035064602 scopus 로고    scopus 로고
    • Taxonomic study of aerobic thermophilic bacilli
    • Nazina T.N., Tourova T.P., Poltaraus A.B., et al. 2001. Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int. J. Syst. Evol. Microbiol. 51, 433-446.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 433-446
    • Nazina, T.N.1    Tourova, T.P.2    Poltaraus, A.B.3
  • 12
    • 0032462770 scopus 로고    scopus 로고
    • Observations pertaining to the origin and ecology of microorganisms recovered from deep subsurface Taylorsville Basin, Virginia
    • Onstott T.C., Phelps T.J., Colwell F.S., et al. 1998. Observations pertaining to the origin and ecology of microorganisms recovered from deep subsurface Taylorsville Basin, Virginia. Geomicrobiol. J. 15, 353-385.
    • (1998) Geomicrobiol. J. , vol.15 , pp. 353-385
    • Onstott, T.C.1    Phelps, T.J.2    Colwell, F.S.3
  • 13
    • 2942726112 scopus 로고    scopus 로고
    • Crude-oil-degrading thermophilic bacterium isolated from an oil field
    • Hao R., Lu A., Wang G. 2004. Crude-oil-degrading thermophilic bacterium isolated from an oil field. Can. J. Microbiol. 50, 175-182.
    • (2004) Can. J. Microbiol. , vol.50 , pp. 175-182
    • Hao, R.1    Lu, A.2    Wang, G.3
  • 14
    • 19944431466 scopus 로고    scopus 로고
    • Geobacillus jurassicus sp. nov., a new thermophilic bacterium isolated from a high-temperature petroleum reservoir, and the validation of the Geobacillus species
    • Nazina T.N., Sokolova D.Sh., Grigoryan A.A., et al. 2005. Geobacillus jurassicus sp. nov., a new thermophilic bacterium isolated from a high-temperature petroleum reservoir, and the validation of the Geobacillus species. Syst. Appl. Microbiol. 28, 43-53.
    • (2005) Syst. Appl. Microbiol. , vol.28 , pp. 43-53
    • Nazina, T.N.1    Sokolova, D.Sh.2    Grigoryan, A.A.3
  • 15
    • 23744432040 scopus 로고    scopus 로고
    • The phylogenetic diversity of aerobic organotrophic bacteria from the Dagang high-temperature oil field
    • Nazina T.N., Sokolova D.Sh., Shestakova N.M., et al. 2005. The phylogenetic diversity of aerobic organotrophic bacteria from the Dagang high-temperature oil field. Mikrobiologiya. 74, 343-351.
    • (2005) Mikrobiologiya. , vol.74 , pp. 343-351
    • Nazina, T.N.1    Sokolova, D.Sh.2    Shestakova, N.M.3
  • 16
    • 0035116872 scopus 로고    scopus 로고
    • Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs
    • Kato T., Haruki M., Imanaka T., Morikawa M., Kanaya S. 2001. Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs. J. Biosci. Bioeng. 91, 64-70.
    • (2001) J. Biosci. Bioeng. , vol.91 , pp. 64-70
    • Kato, T.1    Haruki, M.2    Imanaka, T.3    Morikawa, M.4    Kanaya, S.5
  • 17
    • 33748329585 scopus 로고    scopus 로고
    • Isolation and characterization of a novel thermophilic Bacillus strain degrading long-chain n-alkanes
    • Wang L., Tang Y., Wang S., et al. 2006. Isolation and characterization of a novel thermophilic Bacillus strain degrading long-chain n-alkanes. Extremophiles. 10, 347-356.
    • (2006) Extremophiles. , vol.10 , pp. 347-356
    • Wang, L.1    Tang, Y.2    Wang, S.3
  • 18
    • 0030454648 scopus 로고    scopus 로고
    • Isolation and characterization of a thermophilic bacillus strain that degrades phenol and cresols as sole carbon source at 70°C
    • Mutzel A., Reinscheid U.M., Antranikian G., Müller R. 1996. Isolation and characterization of a thermophilic bacillus strain that degrades phenol and cresols as sole carbon source at 70°C. Appl. Microbiol. Biotechnol. 46, 593-596.
    • (1996) Appl. Microbiol. Biotechnol. , vol.46 , pp. 593-596
    • Mutzel, A.1    Reinscheid, U.M.2    Antranikian, G.3    Müller, R.4
  • 19
    • 0033950340 scopus 로고    scopus 로고
    • Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophilic Bacillus thermoleovorans
    • Annweiler E., Richnow H.H., Antranikian G., et al. 2000. Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophilic Bacillus thermoleovorans. Appl. Environ. Microbiol. 66, 518-523.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 518-523
    • Annweiler, E.1    Richnow, H.H.2    Antranikian, G.3
  • 20
    • 0037839837 scopus 로고    scopus 로고
    • Kinetic parameters of continuous cultures of Bacillus thermoleovorans sp. A2 degrading phenol at 65°C
    • Feitkenhauer H., Schnicke S., Müller R., Märkl H. 2003. Kinetic parameters of continuous cultures of Bacillus thermoleovorans sp. A2 degrading phenol at 65°C. J. Biotechnol. 103, 129-135.
    • (2003) J. Biotechnol. , vol.103 , pp. 129-135
    • Feitkenhauer, H.1    Schnicke, S.2    Müller, R.3    Märkl, H.4
  • 21
    • 33645307377 scopus 로고    scopus 로고
    • Biodegradation of crude oil by thermophilic bacteria isolated from a volcano island
    • Meintanis C., Chalkou K.I., Kormas K.A., Karagouni A.D. 2006. Biodegradation of crude oil by thermophilic bacteria isolated from a volcano island. Biodegradation. 17, 3-9.
    • (2006) Biodegradation. , vol.17 , pp. 3-9
    • Meintanis, C.1    Chalkou, K.I.2    Kormas, K.A.3    Karagouni, A.D.4
  • 22
    • 34248385250 scopus 로고    scopus 로고
    • Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
    • Feng L., Wang W., Cheng J., et al. 2007. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc. Natl. Acad. Sci. USA. 104, 5602-5607.
    • (2007) Proc. Natl. Acad. Sci. USA. , vol.104 , pp. 5602-5607
    • Feng, L.1    Wang, W.2    Cheng, J.3
  • 23
    • 15844381829 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 9, 3251-3270.
    • (1994) Nucleic Acids Res. , vol.9 , pp. 3251-3270
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 24
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 25
    • 0028509254 scopus 로고
    • TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • van de Peer Y., De Wachter R. 1994. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10, 569-570.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2
  • 26
    • 0028089687 scopus 로고
    • Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase
    • Shanklin J., Whittle E., Fox B.G. 1994. Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase. Biochemistry. 33, 12787-12794.
    • (1994) Biochemistry. , vol.33 , pp. 12787-12794
    • Shanklin, J.1    Whittle, E.2    Fox, B.G.3
  • 28
    • 0026332291 scopus 로고
    • Evidence for horizontal gene transfer in Escherichia coli speciation
    • Medigue C., Rouxel T., Vigier P., Henaut A., Danchin A. 1991. Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222, 851-856.
    • (1991) J. Mol. Biol. , vol.222 , pp. 851-856
    • Medigue, C.1    Rouxel, T.2    Vigier, P.3    Henaut, A.4    Danchin, A.5
  • 29
    • 0036198891 scopus 로고    scopus 로고
    • Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: A model molecule for molecular systematic studies
    • Dauga C. 2002. Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: A model molecule for molecular systematic studies. Int. J. Syst. Evol. Microbiol. 52, 531-547.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 531-547
    • Dauga, C.1
  • 30
    • 33746089187 scopus 로고    scopus 로고
    • Occurrence, phylogeny and evolution of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in obligately chemolithoautotrophic sulfur-oxidizing bacteria of the genera Thiomicrospira and Thioalkalimicrobium
    • Tourova T.P., Spiridonova E.M., Berg I.A., Kuznetsov B.B., Sorokin D.Yu. 2006. Occurrence, phylogeny and evolution of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in obligately chemolithoautotrophic sulfur-oxidizing bacteria of the genera Thiomicrospira and Thioalkalimicrobium. Microbiology. 152, 2159-2169.
    • (2006) Microbiology. , vol.152 , pp. 2159-2169
    • Tourova, T.P.1    Spiridonova, E.M.2    Berg, I.A.3    Kuznetsov, B.B.4    Sorokin, D.Yu.5
  • 31
    • 19644362750 scopus 로고    scopus 로고
    • Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus
    • Zeigler D.R. 2005. Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus. Int. J. Syst. Evol. Microbiol. 55, 1171-1179.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1171-1179
    • Zeigler, D.R.1
  • 32
    • 0031912529 scopus 로고    scopus 로고
    • Heterogeneity in codon usage in the flatworm Schistosoma mansoni
    • Musto H., Romero H., Rodriguez-Maseda H. 1998. Heterogeneity in codon usage in the flatworm Schistosoma mansoni. J. Mol. Evol. 46, 159-167.
    • (1998) J. Mol. Evol. , vol.46 , pp. 159-167
    • Musto, H.1    Romero, H.2    Rodriguez-Maseda, H.3
  • 33
    • 0027525640 scopus 로고
    • Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C-and G-ending codons
    • Fennoy S.L., Bailey-Serres J. 1993. Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C-and G-ending codons. Nucleic Acids Res. 21, 5294-5300.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5294-5300
    • Fennoy, S.L.1    Bailey-Serres, J.2
  • 37
    • 0015612808 scopus 로고
    • Genetic regulation of octane dissimulation plasmid in Pseudomonas
    • Chakrabarty A.M., Chou G., Gunsalus I.C. 1973. Genetic regulation of octane dissimulation plasmid in Pseudomonas. Proc. Natl. Acad. Sci. USA. 70, 1137-1140.
    • (1973) Proc. Natl. Acad. Sci. USA. , vol.70 , pp. 1137-1140
    • Chakrabarty, A.M.1    Chou, G.2    Gunsalus, I.C.3
  • 38
    • 0034969905 scopus 로고    scopus 로고
    • Analysis of Pseudomonas putida alkane degradation gene clusters and flanking insertion sequences: Evolution and regulation of the Alk genes
    • van Beilen J.B., Panke S., Lucchini S., Franchini A.G., Röthlisberger M., Witholt B. 2001. Analysis of Pseudomonas putida alkane degradation gene clusters and flanking insertion sequences: Evolution and regulation of the Alk genes. Microbiology. 147, 1621-1630.
    • (2001) Microbiology. , vol.147 , pp. 1621-1630
    • Van Beilen, J.B.1    Panke, S.2    Lucchini, S.3    Franchini, A.G.4    Röthlisberger, M.5    Witholt, B.6
  • 39
    • 0034966733 scopus 로고    scopus 로고
    • The alkane hydroxylase gene of Burkholderia cepacia RR10 is under catabolite repression control
    • Marin M.M., Smits T.H.M., van Beilen J.B., Rojo F. 2001. The alkane hydroxylase gene of Burkholderia cepacia RR10 is under catabolite repression control. J. Bacteriol. 183, 4202-4209.
    • (2001) J. Bacteriol. , vol.183 , pp. 4202-4209
    • Marin, M.M.1    Smits, T.H.M.2    Van Beilen, J.B.3    Rojo, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.