-
1
-
-
0041916075
-
Diversity of alkane hydroxylase systems in the environment
-
van Beilen J.B., Li Z., Duetz W.A., Smits T.H.M., Witholt B. 2003. Diversity of alkane hydroxylase systems in the environment. Oil Gas Sci. Technol. 58, 427-440.
-
(2003)
Oil Gas Sci. Technol.
, vol.58
, pp. 427-440
-
-
Van Beilen, J.B.1
Li, Z.2
Duetz, W.A.3
Smits, T.H.M.4
Witholt, B.5
-
2
-
-
0033171433
-
Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains
-
Smits T.H., Rothlisberger M., Witholt B., van Beilen J.B. 1999. Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains. Environ. Microbiol. 1, 307-317.
-
(1999)
Environ. Microbiol.
, vol.1
, pp. 307-317
-
-
Smits, T.H.1
Rothlisberger, M.2
Witholt, B.3
Van Beilen, J.B.4
-
3
-
-
0036188547
-
Functional analysis of alkane hydroxylases from Gram-negative and Gram-positive bacteria
-
Smits T.H., Balada S.B., Witholt B., van Beilen J.B. 2002. Functional analysis of alkane hydroxylases from Gram-negative and Gram-positive bacteria. J. Bacteriol. 184, 1733-1742.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 1733-1742
-
-
Smits, T.H.1
Balada, S.B.2
Witholt, B.3
Van Beilen, J.B.4
-
4
-
-
0034548825
-
Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN
-
Andreoni V., Bernasconi S., Colombo M., van Beilen J.B., Cavalca L. 2000. Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN. Environ. Microbiol. 2, 572-577.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 572-577
-
-
Andreoni, V.1
Bernasconi, S.2
Colombo, M.3
Van Beilen, J.B.4
Cavalca, L.5
-
5
-
-
0033850347
-
Distribution of alkB genes within n-alkane-degrading bacteria
-
Vomberg A., Klinner U. 2000. Distribution of alkB genes within n-alkane-degrading bacteria. J. Appl. Microbiol. 89, 339-348.
-
(2000)
J. Appl. Microbiol.
, vol.89
, pp. 339-348
-
-
Vomberg, A.1
Klinner, U.2
-
6
-
-
18744416524
-
Alkane hydroxylase homologues in Gram-positive strains
-
van Beilen J.B., Smits T.H., Whyte L.G., et al. 2002. Alkane hydroxylase homologues in Gram-positive strains. Environ. Microbiol. 4, 676-682.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 676-682
-
-
Van Beilen, J.B.1
Smits, T.H.2
Whyte, L.G.3
-
7
-
-
0242669334
-
Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531
-
Whyte L.G., Smits T.H., Labbe D., Witholt B., Greer C.W., van Beilen J.B. 2002. Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl. Environ. Microbiol. 68, 5933-5942.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5933-5942
-
-
Whyte, L.G.1
Smits, T.H.2
Labbe, D.3
Witholt, B.4
Greer, C.W.5
Van Beilen, J.B.6
-
8
-
-
1342268703
-
Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2
-
Hara A., Baik S.-H., Syutsubo K., Misawa N., Smits T.H.M., van Beilen J.B., Harayama S. 2004. Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2. Environ. Microbiol. 6, 191-197.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 191-197
-
-
Hara, A.1
Baik, S.-H.2
Syutsubo, K.3
Misawa, N.4
Smits, T.H.M.5
Van Beilen, J.B.6
Harayama, S.7
-
9
-
-
33645030815
-
The degradation of n-hexadecane in soil by thermophilic geobacilli
-
Marchant R., Sharkey F.H., Banat I.M., Rahman T.J., Perfumo A. 2006. The degradation of n-hexadecane in soil by thermophilic geobacilli. FEMS Microbiol. Ecol. 56, 44-54.
-
(2006)
FEMS Microbiol. Ecol.
, vol.56
, pp. 44-54
-
-
Marchant, R.1
Sharkey, F.H.2
Banat, I.M.3
Rahman, T.J.4
Perfumo, A.5
-
10
-
-
3242816006
-
A rapid and effective method of extracting fully intact RNA from thermophilic geobacilli that is suitable for gene expression analysis
-
Sharkey F.H., Banat I.M., Marchant R. 2004. A rapid and effective method of extracting fully intact RNA from thermophilic geobacilli that is suitable for gene expression analysis. Extremophiles. 8, 73-77.
-
(2004)
Extremophiles.
, vol.8
, pp. 73-77
-
-
Sharkey, F.H.1
Banat, I.M.2
Marchant, R.3
-
11
-
-
0035064602
-
Taxonomic study of aerobic thermophilic bacilli
-
Nazina T.N., Tourova T.P., Poltaraus A.B., et al. 2001. Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int. J. Syst. Evol. Microbiol. 51, 433-446.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 433-446
-
-
Nazina, T.N.1
Tourova, T.P.2
Poltaraus, A.B.3
-
12
-
-
0032462770
-
Observations pertaining to the origin and ecology of microorganisms recovered from deep subsurface Taylorsville Basin, Virginia
-
Onstott T.C., Phelps T.J., Colwell F.S., et al. 1998. Observations pertaining to the origin and ecology of microorganisms recovered from deep subsurface Taylorsville Basin, Virginia. Geomicrobiol. J. 15, 353-385.
-
(1998)
Geomicrobiol. J.
, vol.15
, pp. 353-385
-
-
Onstott, T.C.1
Phelps, T.J.2
Colwell, F.S.3
-
13
-
-
2942726112
-
Crude-oil-degrading thermophilic bacterium isolated from an oil field
-
Hao R., Lu A., Wang G. 2004. Crude-oil-degrading thermophilic bacterium isolated from an oil field. Can. J. Microbiol. 50, 175-182.
-
(2004)
Can. J. Microbiol.
, vol.50
, pp. 175-182
-
-
Hao, R.1
Lu, A.2
Wang, G.3
-
14
-
-
19944431466
-
Geobacillus jurassicus sp. nov., a new thermophilic bacterium isolated from a high-temperature petroleum reservoir, and the validation of the Geobacillus species
-
Nazina T.N., Sokolova D.Sh., Grigoryan A.A., et al. 2005. Geobacillus jurassicus sp. nov., a new thermophilic bacterium isolated from a high-temperature petroleum reservoir, and the validation of the Geobacillus species. Syst. Appl. Microbiol. 28, 43-53.
-
(2005)
Syst. Appl. Microbiol.
, vol.28
, pp. 43-53
-
-
Nazina, T.N.1
Sokolova, D.Sh.2
Grigoryan, A.A.3
-
15
-
-
23744432040
-
The phylogenetic diversity of aerobic organotrophic bacteria from the Dagang high-temperature oil field
-
Nazina T.N., Sokolova D.Sh., Shestakova N.M., et al. 2005. The phylogenetic diversity of aerobic organotrophic bacteria from the Dagang high-temperature oil field. Mikrobiologiya. 74, 343-351.
-
(2005)
Mikrobiologiya.
, vol.74
, pp. 343-351
-
-
Nazina, T.N.1
Sokolova, D.Sh.2
Shestakova, N.M.3
-
16
-
-
0035116872
-
Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs
-
Kato T., Haruki M., Imanaka T., Morikawa M., Kanaya S. 2001. Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs. J. Biosci. Bioeng. 91, 64-70.
-
(2001)
J. Biosci. Bioeng.
, vol.91
, pp. 64-70
-
-
Kato, T.1
Haruki, M.2
Imanaka, T.3
Morikawa, M.4
Kanaya, S.5
-
17
-
-
33748329585
-
Isolation and characterization of a novel thermophilic Bacillus strain degrading long-chain n-alkanes
-
Wang L., Tang Y., Wang S., et al. 2006. Isolation and characterization of a novel thermophilic Bacillus strain degrading long-chain n-alkanes. Extremophiles. 10, 347-356.
-
(2006)
Extremophiles.
, vol.10
, pp. 347-356
-
-
Wang, L.1
Tang, Y.2
Wang, S.3
-
18
-
-
0030454648
-
Isolation and characterization of a thermophilic bacillus strain that degrades phenol and cresols as sole carbon source at 70°C
-
Mutzel A., Reinscheid U.M., Antranikian G., Müller R. 1996. Isolation and characterization of a thermophilic bacillus strain that degrades phenol and cresols as sole carbon source at 70°C. Appl. Microbiol. Biotechnol. 46, 593-596.
-
(1996)
Appl. Microbiol. Biotechnol.
, vol.46
, pp. 593-596
-
-
Mutzel, A.1
Reinscheid, U.M.2
Antranikian, G.3
Müller, R.4
-
19
-
-
0033950340
-
Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophilic Bacillus thermoleovorans
-
Annweiler E., Richnow H.H., Antranikian G., et al. 2000. Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophilic Bacillus thermoleovorans. Appl. Environ. Microbiol. 66, 518-523.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 518-523
-
-
Annweiler, E.1
Richnow, H.H.2
Antranikian, G.3
-
20
-
-
0037839837
-
Kinetic parameters of continuous cultures of Bacillus thermoleovorans sp. A2 degrading phenol at 65°C
-
Feitkenhauer H., Schnicke S., Müller R., Märkl H. 2003. Kinetic parameters of continuous cultures of Bacillus thermoleovorans sp. A2 degrading phenol at 65°C. J. Biotechnol. 103, 129-135.
-
(2003)
J. Biotechnol.
, vol.103
, pp. 129-135
-
-
Feitkenhauer, H.1
Schnicke, S.2
Müller, R.3
Märkl, H.4
-
21
-
-
33645307377
-
Biodegradation of crude oil by thermophilic bacteria isolated from a volcano island
-
Meintanis C., Chalkou K.I., Kormas K.A., Karagouni A.D. 2006. Biodegradation of crude oil by thermophilic bacteria isolated from a volcano island. Biodegradation. 17, 3-9.
-
(2006)
Biodegradation.
, vol.17
, pp. 3-9
-
-
Meintanis, C.1
Chalkou, K.I.2
Kormas, K.A.3
Karagouni, A.D.4
-
22
-
-
34248385250
-
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
-
Feng L., Wang W., Cheng J., et al. 2007. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc. Natl. Acad. Sci. USA. 104, 5602-5607.
-
(2007)
Proc. Natl. Acad. Sci. USA.
, vol.104
, pp. 5602-5607
-
-
Feng, L.1
Wang, W.2
Cheng, J.3
-
23
-
-
15844381829
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 9, 3251-3270.
-
(1994)
Nucleic Acids Res.
, vol.9
, pp. 3251-3270
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
24
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
25
-
-
0028509254
-
TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
-
van de Peer Y., De Wachter R. 1994. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10, 569-570.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 569-570
-
-
Van De Peer, Y.1
De Wachter, R.2
-
26
-
-
0028089687
-
Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase
-
Shanklin J., Whittle E., Fox B.G. 1994. Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase. Biochemistry. 33, 12787-12794.
-
(1994)
Biochemistry.
, vol.33
, pp. 12787-12794
-
-
Shanklin, J.1
Whittle, E.2
Fox, B.G.3
-
27
-
-
11144307432
-
Identification of an amino acid position that determines the substrate range of integral membrane akane hydroxylases
-
van Beilen J.B., Smits T.H.M., Roos F.F., Brunner T., Balada S.B., Röthlisberger M., Witholt B. 2005. Identification of an amino acid position that determines the substrate range of integral membrane akane hydroxylases. J. Bacteriol. 187, 85-91.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 85-91
-
-
Van Beilen, J.B.1
Smits, T.H.M.2
Roos, F.F.3
Brunner, T.4
Balada, S.B.5
Röthlisberger, M.6
Witholt, B.7
-
28
-
-
0026332291
-
Evidence for horizontal gene transfer in Escherichia coli speciation
-
Medigue C., Rouxel T., Vigier P., Henaut A., Danchin A. 1991. Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222, 851-856.
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 851-856
-
-
Medigue, C.1
Rouxel, T.2
Vigier, P.3
Henaut, A.4
Danchin, A.5
-
29
-
-
0036198891
-
Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: A model molecule for molecular systematic studies
-
Dauga C. 2002. Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: A model molecule for molecular systematic studies. Int. J. Syst. Evol. Microbiol. 52, 531-547.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 531-547
-
-
Dauga, C.1
-
30
-
-
33746089187
-
Occurrence, phylogeny and evolution of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in obligately chemolithoautotrophic sulfur-oxidizing bacteria of the genera Thiomicrospira and Thioalkalimicrobium
-
Tourova T.P., Spiridonova E.M., Berg I.A., Kuznetsov B.B., Sorokin D.Yu. 2006. Occurrence, phylogeny and evolution of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in obligately chemolithoautotrophic sulfur-oxidizing bacteria of the genera Thiomicrospira and Thioalkalimicrobium. Microbiology. 152, 2159-2169.
-
(2006)
Microbiology.
, vol.152
, pp. 2159-2169
-
-
Tourova, T.P.1
Spiridonova, E.M.2
Berg, I.A.3
Kuznetsov, B.B.4
Sorokin, D.Yu.5
-
31
-
-
19644362750
-
Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus
-
Zeigler D.R. 2005. Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus. Int. J. Syst. Evol. Microbiol. 55, 1171-1179.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 1171-1179
-
-
Zeigler, D.R.1
-
32
-
-
0031912529
-
Heterogeneity in codon usage in the flatworm Schistosoma mansoni
-
Musto H., Romero H., Rodriguez-Maseda H. 1998. Heterogeneity in codon usage in the flatworm Schistosoma mansoni. J. Mol. Evol. 46, 159-167.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 159-167
-
-
Musto, H.1
Romero, H.2
Rodriguez-Maseda, H.3
-
33
-
-
0027525640
-
Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C-and G-ending codons
-
Fennoy S.L., Bailey-Serres J. 1993. Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C-and G-ending codons. Nucleic Acids Res. 21, 5294-5300.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5294-5300
-
-
Fennoy, S.L.1
Bailey-Serres, J.2
-
34
-
-
1342289955
-
Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis
-
van Beilen J.B., Marin M., Smits T.H.M., Röthlisberger M., Franchini A., Witholt B., Rojo F. 2004. Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ. Microbiol. 6, 264-273.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 264-273
-
-
Van Beilen, J.B.1
Marin, M.2
Smits, T.H.M.3
Röthlisberger, M.4
Franchini, A.5
Witholt, B.6
Rojo, F.7
-
35
-
-
0024536161
-
The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expression
-
Kok M., Oldenhuis R., van der Linden M.P.G., Raatjes P., Kingma J., van Lelyveld P.H., Witholt B. 1989. The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expression. J. Biol. Chem. 264, 5435-5441.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 5435-5441
-
-
Kok, M.1
Oldenhuis, R.2
Van Der Linden, M.P.G.3
Raatjes, P.4
Kingma, J.5
Van Lelyveld, P.H.6
Witholt, B.7
-
36
-
-
12744268746
-
Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus
-
Takami H., Takaki Y., Chee G.-J., Nishi S., Shimamura S., Suzuki H., Matsui S., Uchiyama I. 2004. Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. Nucleic Acids Res. 32, 6292-6303.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6292-6303
-
-
Takami, H.1
Takaki, Y.2
Chee, G.-J.3
Nishi, S.4
Shimamura, S.5
Suzuki, H.6
Matsui, S.7
Uchiyama, I.8
-
38
-
-
0034969905
-
Analysis of Pseudomonas putida alkane degradation gene clusters and flanking insertion sequences: Evolution and regulation of the Alk genes
-
van Beilen J.B., Panke S., Lucchini S., Franchini A.G., Röthlisberger M., Witholt B. 2001. Analysis of Pseudomonas putida alkane degradation gene clusters and flanking insertion sequences: Evolution and regulation of the Alk genes. Microbiology. 147, 1621-1630.
-
(2001)
Microbiology.
, vol.147
, pp. 1621-1630
-
-
Van Beilen, J.B.1
Panke, S.2
Lucchini, S.3
Franchini, A.G.4
Röthlisberger, M.5
Witholt, B.6
-
39
-
-
0034966733
-
The alkane hydroxylase gene of Burkholderia cepacia RR10 is under catabolite repression control
-
Marin M.M., Smits T.H.M., van Beilen J.B., Rojo F. 2001. The alkane hydroxylase gene of Burkholderia cepacia RR10 is under catabolite repression control. J. Bacteriol. 183, 4202-4209.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4202-4209
-
-
Marin, M.M.1
Smits, T.H.M.2
Van Beilen, J.B.3
Rojo, F.4
|