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Volumn 34, Issue 1, 2018, Pages 109-111

CSAR: A contig scaffolding tool using algebraic rearrangements

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BACTERIUM; CONTIG MAPPING; DNA SEQUENCE; GENETICS; GENOME; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; PROCEDURES; SOFTWARE;

EID: 85040034372     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btx543     Document Type: Article
Times cited : (25)

References (8)
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    • Gurevich, A. et al. (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics, 29, 1072-1075.
    • (2013) Bioinformatics , vol.29 , pp. 1072-1075
    • Gurevich, A.1
  • 2
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz, S. et al. (2004) Versatile and open software for comparing large genomes. Genome Biol., 5, R12.
    • (2004) Genome Biol. , vol.5 , pp. R12
    • Kurtz, S.1
  • 3
    • 84946712670 scopus 로고    scopus 로고
    • An efficient algorithm for the contig ordering problem under algebraic rearrangement distance
    • Lu, C.L. (2015) An efficient algorithm for the contig ordering problem under algebraic rearrangement distance. J. Comput. Biol., 22, 975-987.
    • (2015) J. Comput. Biol. , vol.22 , pp. 975-987
    • Lu, C.L.1
  • 4
    • 84923919791 scopus 로고    scopus 로고
    • CAR: Contig assembly of prokaryotic draft genomes using rearrangements
    • Lu, C.L. et al. (2014) CAR: contig assembly of prokaryotic draft genomes using rearrangements. BMC Bioinformatics, 15, 381.
    • (2014) BMC Bioinformatics , vol.15 , pp. 381
    • Lu, C.L.1
  • 5
    • 67449095888 scopus 로고    scopus 로고
    • Genome assembly reborn: Recent computational challenges
    • Pop, M. (2009) Genome assembly reborn: recent computational challenges. Brief. Bioinf., 10, 354-366.
    • (2009) Brief. Bioinf. , vol.10 , pp. 354-366
    • Pop, M.1
  • 6
    • 34547852218 scopus 로고    scopus 로고
    • OSLay: Optimal syntenic layout of unfinished assemblies
    • Richter, D.C. et al. (2007) OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics, 23, 1573-1579.
    • (2007) Bioinformatics , vol.23 , pp. 1573-1579
    • Richter, D.C.1
  • 7
    • 68549115571 scopus 로고    scopus 로고
    • Reordering contigs of draft genomes using the Mauve Aligner
    • Rissman, A.I. et al. (2009) Reordering contigs of draft genomes using the Mauve Aligner. Bioinformatics, 25, 2071-2073.
    • (2009) Bioinformatics , vol.25 , pp. 2071-2073
    • Rissman, A.I.1
  • 8
    • 23144442407 scopus 로고    scopus 로고
    • Projector 2: Contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
    • van Hijum, S.A.F.T. et al. (2005) Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res., 33, W560-W566.
    • (2005) Nucleic Acids Res. , vol.33 , pp. W560-W566
    • Van Hijum, S.A.F.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.