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Volumn 1, Issue 6, 2018, Pages

Comparison of the nasopharynx microbiome between influenza and non-influenza cases of severe acute respiratory infections: A pilot study

Author keywords

coinfection; influenza A virus; microbiome; respiratory disease; severe acute respiratory infection; upper respiratory tract

Indexed keywords

RNA 16S;

EID: 85056884299     PISSN: None     EISSN: 23988835     Source Type: Journal    
DOI: 10.1002/hsr2.47     Document Type: Article
Times cited : (23)

References (38)
  • 1
    • 77956499048 scopus 로고    scopus 로고
    • Influenza virus evolution, host adaptation, and pandemic formation
    • Taubenberger JK, Kash JC. Influenza virus evolution, host adaptation, and pandemic formation. Cell Host Microbe. 2010;7(6):440-451. https://doi.org/10.1016/j.chom.2010.05.009
    • (2010) Cell Host Microbe , vol.7 , Issue.6 , pp. 440-451
    • Taubenberger, J.K.1    Kash, J.C.2
  • 2
    • 84940198035 scopus 로고    scopus 로고
    • Hospitalization fatality risk of influenza A(H1N1)pdm09: a systematic review and meta-analysis
    • Wong JY, Kelly H, C-MM C, et al. Hospitalization fatality risk of influenza A(H1N1)pdm09: a systematic review and meta-analysis. Am J Epidemiol. 2015;182(4):294-301. https://doi.org/10.1093/aje/kwv054
    • (2015) Am J Epidemiol , vol.182 , Issue.4 , pp. 294-301
    • Wong, J.Y.1    Kelly, H.2    C-Mm, C.3
  • 3
    • 70449703996 scopus 로고    scopus 로고
    • What are the consequences of the disappearing human microbiota?
    • Blaser MJ, Falkow S. What are the consequences of the disappearing human microbiota? Nat Rev Microbiol. 2009;7(12):887-894. https://doi.org/10.1038/nrmicro2245
    • (2009) Nat Rev Microbiol , vol.7 , Issue.12 , pp. 887-894
    • Blaser, M.J.1    Falkow, S.2
  • 4
    • 84949553094 scopus 로고    scopus 로고
    • Linking microbiota to human diseases: a systems biology perspective
    • Wu H, Tremaroli V, Bäckhed F. Linking microbiota to human diseases: a systems biology perspective. Trends Endocrinol Metab. 2015;26(12):758-770. https://doi.org/10.1016/j.tem.2015.09.011
    • (2015) Trends Endocrinol Metab , vol.26 , Issue.12 , pp. 758-770
    • Wu, H.1    Tremaroli, V.2    Bäckhed, F.3
  • 5
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • The Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207-214. https://doi.org/10.1038/nature11234
    • (2012) Nature , vol.486 , Issue.7402 , pp. 207-214
  • 6
    • 84947553232 scopus 로고    scopus 로고
    • The human salivary microbiome exhibits temporal stability in bacterial diversity
    • . fiv091
    • Cameron SJS, Huws S, Hegarty MJ, Smith DPM, Mur LAJ. The human salivary microbiome exhibits temporal stability in bacterial diversity. FEMS Microbiol Ecol. 2015;91(July). fiv091. https://doi.org/10.1093/femsec/fiv091
    • (2015) FEMS Microbiol Ecol , vol.91 , Issue.July
    • Cameron, S.J.S.1    Huws, S.2    Hegarty, M.J.3    Smith, D.P.M.4    Mur, L.A.J.5
  • 7
    • 84877899252 scopus 로고    scopus 로고
    • Comparison of the respiratory microbiome in healthy nonsmokers and smokers
    • Morris A, Beck JM, Schloss PD, et al. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med. 2013;187(10):1067-1075. https://doi.org/10.1164/rccm.201210-1913OC
    • (2013) Am J Respir Crit Care Med , vol.187 , Issue.10 , pp. 1067-1075
    • Morris, A.1    Beck, J.M.2    Schloss, P.D.3
  • 8
    • 84938484259 scopus 로고    scopus 로고
    • The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation
    • Carmody LA, Zhao J, Kalikin LM, et al. The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation. Microbiome. 2015;3(1):12. https://doi.org/10.1186/s40168-015-0074-9
    • (2015) Microbiome , vol.3 , Issue.1 , pp. 12
    • Carmody, L.A.1    Zhao, J.2    Kalikin, L.M.3
  • 9
    • 85031038816 scopus 로고    scopus 로고
    • Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study
    • Langevin S, Pichon M, Smith E, et al. Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study. J Gen Virol. 2017;98(10):2425-2437. https://doi.org/10.1099/jgv.0.000920
    • (2017) J Gen Virol , vol.98 , Issue.10 , pp. 2425-2437
    • Langevin, S.1    Pichon, M.2    Smith, E.3
  • 10
    • 84875068215 scopus 로고    scopus 로고
    • Viral and bacterial interactions in the upper respiratory tract
    • Hobman TC, ed
    • Bosch AATM, Biesbroek G, Trzcinski K, Sanders EAM, Bogaert D. Viral and bacterial interactions in the upper respiratory tract. Hobman TC, ed. PLoS Pathog 2013;9(1):e1003057. https://doi.org/10.1371/journal.ppat.1003057
    • (2013) PLoS Pathog , vol.9 , Issue.1
    • Bosch, A.A.T.M.1    Biesbroek, G.2    Trzcinski, K.3    Sanders, E.A.M.4    Bogaert, D.5
  • 11
    • 84997207326 scopus 로고    scopus 로고
    • The microbiota in bronchoalveolar lavage from young children with chronic lung disease includes taxa present in both the oropharynx and nasopharynx
    • Marsh RL, Kaestli M, Chang AB, et al. The microbiota in bronchoalveolar lavage from young children with chronic lung disease includes taxa present in both the oropharynx and nasopharynx. Microbiome. 2016;4(1):37. https://doi.org/10.1186/s40168-016-0182-1
    • (2016) Microbiome , vol.4 , Issue.1 , pp. 37
    • Marsh, R.L.1    Kaestli, M.2    Chang, A.B.3
  • 13
    • 79955121049 scopus 로고    scopus 로고
    • Microbiota regulates immune defense against respiratory tract influenza A virus infection
    • Ichinohe T, Pang IK, Kumamoto Y, et al. Microbiota regulates immune defense against respiratory tract influenza A virus infection. Proc Natl Acad Sci USA. 2011;108(13):5354-5359. https://doi.org/10.1073/pnas.1019378108
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.13 , pp. 5354-5359
    • Ichinohe, T.1    Pang, I.K.2    Kumamoto, Y.3
  • 14
    • 84940556493 scopus 로고    scopus 로고
    • Why is coinfection with influenza virus and bacteria so difficult to control?
    • Cauley LS, Vella AT. Why is coinfection with influenza virus and bacteria so difficult to control? Discov Med. 2015;19(102):33-40. https://doi.org/10.1021/ac901991x
    • (2015) Discov Med , vol.19 , Issue.102 , pp. 33-40
    • Cauley, L.S.1    Vella, A.T.2
  • 15
    • 79952298772 scopus 로고    scopus 로고
    • Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis
    • Bogaert D, Keijser B, Huse S, et al. Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PLoS one. 2011;6(2):e17035. https://doi.org/10.1371/journal.pone.0017035
    • (2011) PLoS one , vol.6 , Issue.2
    • Bogaert, D.1    Keijser, B.2    Huse, S.3
  • 16
    • 84936980426 scopus 로고    scopus 로고
    • The role of the local microbial ecosystem in respiratory health and disease
    • de Steenhuijsen Piters WAA, Sanders EAM, Bogaert D. The role of the local microbial ecosystem in respiratory health and disease. Philos Trans R Soc B Biol Sci. 2015;370(1675):20140294. https://doi.org/10.1098/rstb.2014.0294
    • (2015) Philos Trans R Soc B Biol Sci , vol.370 , Issue.1675
    • de Steenhuijsen Piters, W.A.A.1    Sanders, E.A.M.2    Bogaert, D.3
  • 17
    • 84860848484 scopus 로고    scopus 로고
    • Interactions between Streptococcus pneumoniae and influenza virus: a mutually beneficial relationship?
    • Short KR, Habets MN, Hermans PW, Diavatopoulos DA. Interactions between Streptococcus pneumoniae and influenza virus: a mutually beneficial relationship? Future Microbiol. 2012;7(5):609-624.
    • (2012) Future Microbiol , vol.7 , Issue.5 , pp. 609-624
    • Short, K.R.1    Habets, M.N.2    Hermans, P.W.3    Diavatopoulos, D.A.4
  • 18
    • 77956989122 scopus 로고    scopus 로고
    • Influenza enhances susceptibility to natural acquisition of and disease due to Streptococcus pneumoniae in ferrets
    • McCullers JA, McAuley JL, Browall S, Iverson AR, Boyd KL, Henriques Normark B. Influenza enhances susceptibility to natural acquisition of and disease due to Streptococcus pneumoniae in ferrets. J Infect Dis. 2010;202(8):1287-1295. https://doi.org/10.1086/656333
    • (2010) J Infect Dis , vol.202 , Issue.8 , pp. 1287-1295
    • McCullers, J.A.1    McAuley, J.L.2    Browall, S.3    Iverson, A.R.4    Boyd, K.L.5    Henriques Normark, B.6
  • 19
    • 85017049991 scopus 로고    scopus 로고
    • The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles
    • Tarabichi Y, Li K, Hu S, et al. The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles. Microbiome. 2015;3(1):74. https://doi.org/10.1186/s40168-015-0133-2
    • (2015) Microbiome , vol.3 , Issue.1
    • Tarabichi, Y.1    Li, K.2    Hu, S.3
  • 21
    • 79955057814 scopus 로고    scopus 로고
    • Examining the global distribution of dominant archaeal populations in soil
    • Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R, Fierer N. Examining the global distribution of dominant archaeal populations in soil. ISME J. 2010;5(5):908-917. https://doi.org/10.1038/ismej.2010.171
    • (2010) ISME J , vol.5 , Issue.5 , pp. 908-917
    • Bates, S.T.1    Berg-Lyons, D.2    Caporaso, J.G.3    Walters, W.A.4    Knight, R.5    Fierer, N.6
  • 22
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter SJ, Cox MJ, Turek EM, et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12(1):87. https://doi.org/10.1186/s12915-014-0087-z
    • (2014) BMC Biol , vol.12 , Issue.1 , pp. 87
    • Salter, S.J.1    Cox, M.J.2    Turek, E.M.3
  • 23
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder R, Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 2011;27(6):863-864. https://doi.org/10.1093/bioinformatics/btr026
    • (2011) Bioinformatics , vol.27 , Issue.6 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 24
    • 77957244650 scopus 로고    scopus 로고
    • Supplementary material—search and clustering orders of magnitude faster than BLAST
    • Edgar RC. Supplementary material—search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460-2461. https://doi.org/10.1093/bioinformatics/btq461
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2460-2461
    • Edgar, R.C.1
  • 25
    • 84891787231 scopus 로고    scopus 로고
    • Ribosomal database project: data and tools for high throughput rRNA analysis
    • Cole JR, Wang Q, Fish JA, et al. Ribosomal database project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 2014;42(D1):D633-D642. https://doi.org/10.1093/nar/gkt1244
    • (2014) Nucleic Acids Res , vol.42 , Issue.D1 , pp. D633-D642
    • Cole, J.R.1    Wang, Q.2    Fish, J.A.3
  • 26
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequences data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequences data. Nat Methods. 2010;7(5):335-336. https://doi.org/10.1038/nmeth.f.303
    • (2010) Nat Methods , vol.7 , Issue.5 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 27
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006;72(7):5069-5072. https://doi.org/10.1128/AEM.03006-05
    • (2006) Appl Environ Microbiol , vol.72 , Issue.7 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 28
    • 84991526597 scopus 로고    scopus 로고
    • EMPeror: a tool for visualizing high-throughput microbial community data
    • Vázquez-Baeza Y, Pirrung M, Gonzalez A, Knight R. EMPeror: a tool for visualizing high-throughput microbial community data. Gigascience. 2013;2(1):16. https://doi.org/10.1186/2047-217X-2-16
    • (2013) Gigascience , vol.2 , Issue.1 , pp. 16
    • Vázquez-Baeza, Y.1    Pirrung, M.2    Gonzalez, A.3    Knight, R.4
  • 29
    • 51849103407 scopus 로고    scopus 로고
    • Predominant role of bacterial pneumonia as a cause of death in pandemic influenza: implications for pandemic influenza preparedness
    • Morens DM, Taubenberger JK, Fauci AS. Predominant role of bacterial pneumonia as a cause of death in pandemic influenza: implications for pandemic influenza preparedness. J Infect Dis. 2008;198(7):962-970. https://doi.org/10.1086/591708
    • (2008) J Infect Dis , vol.198 , Issue.7 , pp. 962-970
    • Morens, D.M.1    Taubenberger, J.K.2    Fauci, A.S.3
  • 30
    • 85032151246 scopus 로고    scopus 로고
    • A longitudinal study of the infant nasopharyngeal microbiota: the effects of age, illness and antibiotic use in a cohort of South East Asian children
    • Makepeace BL, ed
    • Salter SJ, Turner C, Watthanaworawit W, deGoffau MC, Wagner J, Parkhill J, Bentley SD, Goldblatt D, Nosten F, Turner P A longitudinal study of the infant nasopharyngeal microbiota: the effects of age, illness and antibiotic use in a cohort of South East Asian children. Makepeace BL, ed. PLoS Negl Trop Dis 2017;11(10):e0005975.https://doi.org/10.1371/journal.pntd.0005975
    • (2017) PLoS Negl Trop Dis , vol.11 , Issue.10
    • Salter, S.J.1    Turner, C.2    Watthanaworawit, W.3    de Goffau, M.C.4    Wagner, J.5    Parkhill, J.6    Bentley, S.D.7    Goldblatt, D.8    Nosten, F.9    Turner, P.10
  • 31
    • 77949476242 scopus 로고    scopus 로고
    • The critically ill child with novel H1N1 influenza A: a case series*
    • Lockman JL, Fischer WA, Perl TM, Valsamakis A, Nichols DG. The critically ill child with novel H1N1 influenza A: a case series*. Pediatr Crit Care Med. 2010;11(2):173-178. https://doi.org/10.1097/PCC.0b013e3181ccedae
    • (2010) Pediatr Crit Care Med , vol.11 , Issue.2 , pp. 173-178
    • Lockman, J.L.1    Fischer, W.A.2    Perl, T.M.3    Valsamakis, A.4    Nichols, D.G.5
  • 32
    • 77949910622 scopus 로고    scopus 로고
    • Influenza infection leads to increased susceptibility to subsequent bacterial superinfection by impairing NK cell responses in the lung
    • Small C-L, Shaler CR, McCormick S, et al. Influenza infection leads to increased susceptibility to subsequent bacterial superinfection by impairing NK cell responses in the lung. J Immunol. 2010;184(4):2048-2056. https://doi.org/10.4049/jimmunol.0902772
    • (2010) J Immunol , vol.184 , Issue.4 , pp. 2048-2056
    • Small, C.-L.1    Shaler, C.R.2    McCormick, S.3
  • 33
    • 84884713908 scopus 로고    scopus 로고
    • Modulation of potential respiratory pathogens by pH1N1 viral infection
    • Leung RKK, Zhou JW, Guan W, Li SK, Yang ZF, Tsui SKW. Modulation of potential respiratory pathogens by pH1N1 viral infection. Clin Microbiol Infect. 2013;19(10):930-935. https://doi.org/10.1111/1469-0691.12054
    • (2013) Clin Microbiol Infect , vol.19 , Issue.10 , pp. 930-935
    • Leung, R.K.K.1    Zhou, J.W.2    Guan, W.3    Li, S.K.4    Yang, Z.F.5    Tsui, S.K.W.6
  • 34
    • 84862800379 scopus 로고    scopus 로고
    • Significance of the microbiome in obstructive lung disease
    • Han MK, Huang YJ, LiPuma JJ, et al. Significance of the microbiome in obstructive lung disease. Thorax. 2012;67(5):456-463. https://doi.org/10.1136/thoraxjnl-2011-201183
    • (2012) Thorax , vol.67 , Issue.5 , pp. 456-463
    • Han, M.K.1    Huang, Y.J.2    LiPuma, J.J.3
  • 35
    • 85011961550 scopus 로고    scopus 로고
    • The interaction between respiratory pathogens and mucus
    • Zanin M, Baviskar P, Webster R, Webby R. The interaction between respiratory pathogens and mucus. Cell Host Microbe. 2016;19(2):159-168. https://doi.org/10.1016/j.chom.2016.01.001
    • (2016) Cell Host Microbe , vol.19 , Issue.2 , pp. 159-168
    • Zanin, M.1    Baviskar, P.2    Webster, R.3    Webby, R.4
  • 36
    • 84867345602 scopus 로고    scopus 로고
    • Overexpressing mouse model demonstrates the protective role of Muc5ac in the lungs
    • Ehre C, Worthington EN, Liesman RM, et al. Overexpressing mouse model demonstrates the protective role of Muc5ac in the lungs. PNAS. 2012;109(41):16528-16533. https://doi.org/10.1073/pnas.1206552109
    • (2012) PNAS , vol.109 , Issue.41 , pp. 16528-16533
    • Ehre, C.1    Worthington, E.N.2    Liesman, R.M.3
  • 37
    • 85032933328 scopus 로고    scopus 로고
    • Bacterial lipopolysaccharide destabilizes influenza viruses
    • Bandoro C, Runstadler JA. Bacterial lipopolysaccharide destabilizes influenza viruses. mSphere. 2017;2(5):e00267-e00217. https://doi.org/10.1128/mSphere.00267-17
    • (2017) mSphere , vol.2 , Issue.5 , pp. e00267-e00217
    • Bandoro, C.1    Runstadler, J.A.2
  • 38
    • 41749124757 scopus 로고    scopus 로고
    • The pathology of influenza virus infections
    • Taubenberger JK, Morens DM. The pathology of influenza virus infections. Annu Rev Pathol Mech Dis. 2008;3(1):499-522. https://doi.org/10.1146/annurev.pathmechdis.3.121806.154316
    • (2008) Annu Rev Pathol Mech Dis , vol.3 , Issue.1 , pp. 499-522
    • Taubenberger, J.K.1    Morens, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.