-
1
-
-
85032867759
-
Preserving the health of the public and our specialty
-
Spellberg B. 2017. Preserving the health of the public and our specialty. Clin Infect Dis 65:1597. https://doi.org/10.1093/cid/cix572.
-
(2017)
Clin Infect Dis
, vol.65
, pp. 1597
-
-
Spellberg, B.1
-
2
-
-
20744437491
-
Georgia: An unlikely stronghold for bacteriophage therapy
-
Parfitt T. 2005. Georgia: an unlikely stronghold for bacteriophage therapy. Lancet 365:2166 –2167. https://doi.org/10.1016/S0140-6736(05) 66759-1.
-
(2005)
Lancet
, vol.365
-
-
Parfitt, T.1
-
3
-
-
84957922991
-
Bacteriophage combinations significantly reduce Clostridium difficile growth in vitro and proliferation in vivo
-
Nale JY, Spencer J, Hargreaves KR, Buckley AM, Trzepiński P, Douce GR, Clokie MR. 2016. Bacteriophage combinations significantly reduce Clostridium difficile growth in vitro and proliferation in vivo. Antimicrob Agents Chemother 60:968 –981. https://doi.org/10.1128/AAC.01774-15.
-
(2016)
Antimicrob Agents Chemother
, vol.60
-
-
Nale, J.Y.1
Spencer, J.2
Hargreaves, K.R.3
Buckley, A.M.4
Trzepiński, P.5
Douce, G.R.6
Clokie, M.R.7
-
4
-
-
85028015134
-
Phage therapy is highly effective against chronic lung infections with Pseudomonas aeruginosa
-
Waters EM, Neill DR, Kaman B, Sahota JS, Clokie MRJ, Winstanley C, Kadioglu A. 2017. Phage therapy is highly effective against chronic lung infections with Pseudomonas aeruginosa. Thorax 72:666 – 667. https:// doi.org/10.1136/thoraxjnl-2016-209265.
-
(2017)
Thorax
, vol.72
-
-
Waters, E.M.1
Neill, D.R.2
Kaman, B.3
Sahota, J.S.4
Clokie, M.R.J.5
Winstanley, C.6
Kadioglu, A.7
-
5
-
-
84938986913
-
Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages
-
Cowley LA, Beckett SJ, Chase-Topping M, Perry N, Dallman TJ, Gally DL, Jenkins C. 2015. Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages. BMC Genomics 16:271. https://doi.org/10.1186/s12864-015-1470-z.
-
(2015)
BMC Genomics
, vol.16
, pp. 271
-
-
Cowley, L.A.1
Beckett, S.J.2
Chase-Topping, M.3
Perry, N.4
Dallman, T.J.5
Gally, D.L.6
Jenkins, C.7
-
6
-
-
84987813254
-
Phage-host interplay: Examples from tailed phages and Gram-negative bacterial pathogens
-
Chaturongakul S, Ounjai P. 2014. Phage-host interplay: examples from tailed phages and Gram-negative bacterial pathogens. Front Microbiol 5:442. https://doi.org/10.3389/fmicb.2014.00442.
-
(2014)
Front Microbiol
, vol.5
, pp. 442
-
-
Chaturongakul, S.1
Ounjai, P.2
-
7
-
-
0017672731
-
Major proteins of the Escherichia coli outer cell envelope membrane as bacteriophage receptors
-
Datta DB, Arden B, Henning U. 1977. Major proteins of the Escherichia coli outer cell envelope membrane as bacteriophage receptors. J Bacteriol 131:821– 829.
-
(1977)
J Bacteriol
, vol.131
, pp. 821-829
-
-
Datta, D.B.1
Arden, B.2
Henning, U.3
-
8
-
-
77957945540
-
Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell
-
Rakhuba DV, Kolomiets EI, Dey ES, Novik GI. 2010. Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell. Pol J Microbiol 59:145–155.
-
(2010)
Pol J Microbiol
, vol.59
, pp. 145-155
-
-
Rakhuba, D.V.1
Kolomiets, E.I.2
Dey, E.S.3
Novik, G.I.4
-
9
-
-
77951104433
-
Bacteriophage resistance mechanisms
-
Labrie SJ, Samson JE, Moineau S. 2010. Bacteriophage resistance mechanisms. Nat Rev Microbiol 8:317–327. https://doi.org/10.1038/nrmicro2315.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 317-327
-
-
Labrie, S.J.1
Samson, J.E.2
Moineau, S.3
-
10
-
-
85034958794
-
Evolution of a zoonotic pathogen: Investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing
-
Shaaban S, Cowley LA, McAteer SP, Jenkins C, Dallman TJ, Bono JL, Gally DL. 2016. Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing. Microb Genom 2:e000096. https://doi.org/10.1099/mgen.0.000096.
-
(2016)
Microb Genom
, vol.2
-
-
Shaaban, S.1
Cowley, L.A.2
McAteer, S.P.3
Jenkins, C.4
Dallman, T.J.5
Bono, J.L.6
Gally, D.L.7
-
11
-
-
85045967242
-
Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two foodborne outbreaks
-
Cowley LA, Dallman TJ, Fitzgerald S, Irvine N, Rooney PJ, McAteer SP, Day M, Perry NT, Bono JL, Jenkins C, Gally DL. 2016. Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two foodborne outbreaks. Microb Genom 2:e000084. https://doi.org/10.1099/mgen.0.000084.
-
(2016)
Microb Genom
, vol.2
-
-
Cowley, L.A.1
Dallman, T.J.2
Fitzgerald, S.3
Irvine, N.4
Rooney, P.J.5
McAteer, S.P.6
Day, M.7
Perry, N.T.8
Bono, J.L.9
Jenkins, C.10
Gally, D.L.11
-
12
-
-
73249130761
-
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
-
Langridge GC, Phan MD, Turner DJ, Perkins TT, Parts L, Haase J, Charles I, Maskell DJ, Peters SE, Dougan G, Wain J, Parkhill J, Turner AK. 2009. Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Res 19:2308 –2316. https://doi.org/10.1101/gr.097097.109.
-
(2009)
Genome Res
, vol.19
-
-
Langridge, G.C.1
Phan, M.D.2
Turner, D.J.3
Perkins, T.T.4
Parts, L.5
Haase, J.6
Charles, I.7
Maskell, D.J.8
Peters, S.E.9
Dougan, G.10
Wain, J.11
Parkhill, J.12
Turner, A.K.13
-
13
-
-
84880876168
-
Approaches to querying bacterial genomes with transposon-insertion sequencing
-
Barquist L, Boinett CJ, Cain AK. 2013. Approaches to querying bacterial genomes with transposon-insertion sequencing. RNA Biol 10:1161–1169. https://doi.org/10.4161/rna.24765.
-
(2013)
RNA Biol
, vol.10
, pp. 1161-1169
-
-
Barquist, L.1
Boinett, C.J.2
Cain, A.K.3
-
14
-
-
84874714760
-
A genomewide mutagenesis screen identifies multiple genes contributing to Vi capsular expression in Salmonella enterica serovar Typhi
-
Pickard D, Kingsley RA, Hale C, Turner K, Sivaraman K, Wetter M, Langridge G, Dougan G. 2013. A genomewide mutagenesis screen identifies multiple genes contributing to Vi capsular expression in Salmonella enterica serovar Typhi. J Bacteriol 195:1320 –1326. https://doi.org/10.1128/JB.01632-12.
-
(2013)
J Bacteriol
, vol.195
-
-
Pickard, D.1
Kingsley, R.A.2
Hale, C.3
Turner, K.4
Sivaraman, K.5
Wetter, M.6
Langridge, G.7
Dougan, G.8
-
15
-
-
0033574065
-
In vivo transposition of mariner-based elements in enteric bacteria and mycobacteria
-
Rubin EJ, Akerley BJ, Novik VN, Lampe DJ, Husson RN, Mekalanos JJ. 1999. In vivo transposition of mariner-based elements in enteric bacteria and mycobacteria. Proc Natl Acad Sci U S A 96:1645–1650. https://doi.org/10.1073/pnas.96.4.1645.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 1645-1650
-
-
Rubin, E.J.1
Akerley, B.J.2
Novik, V.N.3
Lampe, D.J.4
Husson, R.N.5
Mekalanos, J.J.6
-
16
-
-
84899658836
-
Chromosomal DNA deletion confers phage resistance to Pseudomonas aeruginosa
-
Le S, Yao X, Lu S, Tan Y, Rao X, Li M, Jin X, Wang J, Zhao Y, Wu NC, Lux R, He X, Shi W, Hu F. 2014. Chromosomal DNA deletion confers phage resistance to Pseudomonas aeruginosa. Sci Rep 4:4738. https://doi.org/10.1038/srep04738.
-
(2014)
Sci Rep
, vol.4
, pp. 4738
-
-
Le, S.1
Yao, X.2
Lu, S.3
Tan, Y.4
Rao, X.5
Li, M.6
Jin, X.7
Wang, J.8
Zhao, Y.9
Wu, N.C.10
Lux, R.11
He, X.12
Shi, W.13
Hu, F.14
-
17
-
-
84956658776
-
Quantitative Selection analysis of bacteriophage phiCbK susceptibility in Caulobacter crescentus
-
Christen M, Beusch C, Bösch Y, Cerletti D, Flores-Tinoco CE, Del Medico L, Tschan F, Christen B. 2016. Quantitative Selection analysis of bacteriophage phiCbK susceptibility in Caulobacter crescentus. J Mol Biol 428:419 – 430. https://doi.org/10.1016/j.jmb.2015.11.018.
-
(2016)
J Mol Biol
, vol.428
-
-
Christen, M.1
Beusch, C.2
Bösch, Y.3
Cerletti, D.4
Flores-Tinoco, C.E.5
Del Medico, L.6
Tschan, F.7
Christen, B.8
-
18
-
-
0020374670
-
Roles of lipopolysaccharide and outer membrane protein OmpC of Escherichia coli K-12 in the receptor function for bacteriophage T4
-
Yu F, Mizushima S. 1982. Roles of lipopolysaccharide and outer membrane protein OmpC of Escherichia coli K-12 in the receptor function for bacteriophage T4. J Bacteriol 151:718 –722.
-
(1982)
J Bacteriol
, vol.151
, pp. 718-722
-
-
Yu, F.1
Mizushima, S.2
-
19
-
-
0027445662
-
Molecular genetic analysis of a locus required for resistance to antimicrobial peptides in Salmonella typhimurium
-
Parra-Lopez C, Baer MT, Groisman EA. 1993. Molecular genetic analysis of a locus required for resistance to antimicrobial peptides in Salmonella typhimurium. EMBO J 12:4053– 4062.
-
(1993)
EMBO J
, vol.12
, pp. 4053-4062
-
-
Parra-Lopez, C.1
Baer, M.T.2
Groisman, E.A.3
-
20
-
-
85006314357
-
A novel putrescine exporter SapBCDF of Escherichia coli
-
Sugiyama Y, Nakamura A, Matsumoto M, Kanbe A, Sakanaka M, Higashi K, Igarashi K, Katayama T, Suzuki H, Kurihara S. 2016. A novel putrescine exporter SapBCDF of Escherichia coli. J Biol Chem 291:26343–26351. https://doi.org/10.1074/jbc.M116.762450.
-
(2016)
J Biol Chem
, vol.291
, pp. 26343-26351
-
-
Sugiyama, Y.1
Nakamura, A.2
Matsumoto, M.3
Kanbe, A.4
Sakanaka, M.5
Higashi, K.6
Igarashi, K.7
Katayama, T.8
Suzuki, H.9
Kurihara, S.10
-
21
-
-
0035170767
-
Identification of the ABC protein SapD as the subunit that confers ATP dependence to the K+-uptake systems Trk(H) and Trk(G) from Escherichia coli K-12
-
Harms C, Domoto Y, Celik C, Rahe E, Stumpe S, Schmid R, Nakamura T, Bakker EP. 2001. Identification of the ABC protein SapD as the subunit that confers ATP dependence to the K+-uptake systems Trk(H) and Trk(G) from Escherichia coli K-12. Microbiology 147:2991–3003. https://doi.org/10.1099/00221287-147-11-2991.
-
(2001)
Microbiology
, vol.147
, pp. 2991-3003
-
-
Harms, C.1
Domoto, Y.2
Celik, C.3
Rahe, E.4
Stumpe, S.5
Schmid, R.6
Nakamura, T.7
Bakker, E.P.8
-
22
-
-
85027498523
-
Role of sapA and yfgA in susceptibility to antibody-mediated complement-dependent killing and virulence of Salmonella enterica serovar Typhimurium
-
Ondari EM, Heath JN, Klemm EJ, Langridge G, Barquist L, Goulding DA, Clare S, Dougan G, Kingsley RA, MacLennan CA. 18 August 2017. Role of sapA and yfgA in susceptibility to antibody-mediated complement-dependent killing and virulence of Salmonella enterica serovar Typhimurium. Infect Immun 85. https://doi.org/10.1128/IAI.00419-17.
-
(2017)
Infect Immun
, vol.85
-
-
Ondari, E.M.1
Heath, J.N.2
Klemm, E.J.3
Langridge, G.4
Barquist, L.5
Goulding, D.A.6
Clare, S.7
Dougan, G.8
Kingsley, R.A.9
Maclennan, C.A.10
-
23
-
-
85015989839
-
The EcoCyc database: Reflecting new knowledge about Escherichia coli K-12
-
Keseler IM, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martínez C, Caspi R, Fulcher C, Gama-Castro S, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velázquez-Ramírez DA, Weaver D, Collado-Vides J, Paulsen I, Karp PD. 2017. The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Res 45:D543–D550. https://doi.org/10.1093/nar/gkw1003.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D543-D550
-
-
Keseler, I.M.1
Mackie, A.2
Santos-Zavaleta, A.3
Billington, R.4
Bonavides-Martínez, C.5
Caspi, R.6
Fulcher, C.7
Gama-Castro, S.8
Kothari, A.9
Krummenacker, M.10
Latendresse, M.11
Muñiz-Rascado, L.12
Ong, Q.13
Paley, S.14
Peralta-Gil, M.15
Subhraveti, P.16
Velázquez-Ramírez, D.A.17
Weaver, D.18
Collado-Vides, J.19
Paulsen, I.20
Karp, P.D.21
more..
-
24
-
-
85017028901
-
Polynucleotide phosphorylase is implicated in homologous recombination and DNA repair in Escherichia coli
-
Carzaniga T, Sbarufatti G, Briani F, Dehò G. 2017. Polynucleotide phosphorylase is implicated in homologous recombination and DNA repair in Escherichia coli. BMC Microbiol 17:81. https://doi.org/10.1186/s12866-017-0980-z.
-
(2017)
BMC Microbiol
, vol.17
, pp. 81
-
-
Carzaniga, T.1
Sbarufatti, G.2
Briani, F.3
Dehò, G.4
-
25
-
-
17644393469
-
SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli
-
Hansen AM, Qiu Y, Yeh N, Blattner FR, Durfee T, Jin DJ. 2005. SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli. Mol Microbiol 56:719 –734. https://doi.org/10.1111/j.1365-2958.2005.04567.x.
-
(2005)
Mol Microbiol
, vol.56
-
-
Hansen, A.M.1
Qiu, Y.2
Yeh, N.3
Blattner, F.R.4
Durfee, T.5
Jin, D.J.6
-
26
-
-
0038575125
-
Escherichia coli SspA is a transcription activator for bacteriophage P1 late genes
-
Hansen AM, Lehnherr H, Wang X, Mobley V, Jin DJ. 2003. Escherichia coli SspA is a transcription activator for bacteriophage P1 late genes. Mol Microbiol 48:1621–1631. https://doi.org/10.1046/j.1365-2958.2003.03533.x.
-
(2003)
Mol Microbiol
, vol.48
, pp. 1621-1631
-
-
Hansen, A.M.1
Lehnherr, H.2
Wang, X.3
Mobley, V.4
Jin, D.J.5
-
27
-
-
0031824601
-
Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes
-
Wang L, Reeves PR. 1998. Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes. Infect Immun 66:3545–3551.
-
(1998)
Infect Immun
, vol.66
, pp. 3545-3551
-
-
Wang, L.1
Reeves, P.R.2
-
28
-
-
84929494200
-
High-throughput analysis of gene essentiality and sporulation in Clostridium difficile
-
Dembek M, Barquist L, Boinett CJ, Cain AK, Mayho M, Lawley TD, Fairweather NF, Fagan RP. 2015. High-throughput analysis of gene essentiality and sporulation in Clostridium difficile. MBio 6:e02383-14. https://doi.org/10.1128/mBio.02383-14.
-
(2015)
Mbio
, vol.6
-
-
Dembek, M.1
Barquist, L.2
Boinett, C.J.3
Cain, A.K.4
Mayho, M.5
Lawley, T.D.6
Fairweather, N.F.7
Fagan, R.P.8
-
29
-
-
85012975484
-
The secondary resistome of multidrug-resistant Klebsiella pneumoniae
-
Jana B, Cain AK, Doerrler WT, Boinett CJ, Fookes MC, Parkhill J, Guardabassi L. 2017. The secondary resistome of multidrug-resistant Klebsiella pneumoniae. Sci Rep 7:42483. https://doi.org/10.1038/srep42483.
-
(2017)
Sci Rep
, vol.7
, pp. 42483
-
-
Jana, B.1
Cain, A.K.2
Doerrler, W.T.3
Boinett, C.J.4
Fookes, M.C.5
Parkhill, J.6
Guardabassi, L.7
-
30
-
-
0025171521
-
Genetic regulation of formate hydro-genlyase of Escherichia coli: Role of the fhlA gene product as a transcriptional activator for a new regulatory gene, fhlB
-
Maupin JA, Shanmugam KT. 1990. Genetic regulation of formate hydro-genlyase of Escherichia coli: role of the fhlA gene product as a transcriptional activator for a new regulatory gene, fhlB. J Bacteriol 172:4798 – 4806. https://doi.org/10.1128/jb.172.9.4798-4806.1990.
-
(1990)
J Bacteriol
, vol.172
-
-
Maupin, J.A.1
Shanmugam, K.T.2
-
31
-
-
60349118910
-
Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen
-
Perry LL, SanMiguel P, Minocha U, Terekhov AI, Shroyer ML, Farris LA, Bright N, Reuhs BL, Applegate BM. 2009. Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen. FEMS Microbiol Lett 292:182–186. https://doi.org/10.1111/j.1574-6968.2009.01511.x.
-
(2009)
FEMS Microbiol Lett
, vol.292
, pp. 182-186
-
-
Perry, L.L.1
Sanmiguel, P.2
Minocha, U.3
Terekhov, A.I.4
Shroyer, M.L.5
Farris, L.A.6
Bright, N.7
Reuhs, B.L.8
Applegate, B.M.9
-
33
-
-
0023872425
-
Interaction of OmpR, a positive regulator, with the osmoregulated ompC and ompF genes of Escherichia coli. Studies with wild-type and mutant OmpR proteins
-
Mizuno T, Kato M, Jo YL, Mizushima S. 1988. Interaction of OmpR, a positive regulator, with the osmoregulated ompC and ompF genes of Escherichia coli. Studies with wild-type and mutant OmpR proteins. J Biol Chem 263:1008 –1012.
-
(1988)
J Biol Chem
, vol.263
, pp. 1008-1012
-
-
Mizuno, T.1
Kato, M.2
Jo, Y.L.3
Mizushima, S.4
-
34
-
-
0025719297
-
Null mutation in the stringent starvation protein of Escherichia coli disrupts lytic development of bacteriophage P1
-
Williams MD, Fuchs JA, Flickinger MC. 1991. Null mutation in the stringent starvation protein of Escherichia coli disrupts lytic development of bacteriophage P1. Gene 109:21–30. https://doi.org/10.1016/0378-1119(91)90584-X.
-
(1991)
Gene
, vol.109
, pp. 21-30
-
-
Williams, M.D.1
Fuchs, J.A.2
Flickinger, M.C.3
-
35
-
-
84976865403
-
The Pfam protein families database: Towards a more sustainable future
-
Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A. 2016. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res 44:D279 –D285. https://doi.org/10.1093/nar/gkv1344.
-
(2016)
Nucleic Acids Res
, vol.44
-
-
Finn, R.D.1
Coggill, P.2
Eberhardt, R.Y.3
Eddy, S.R.4
Mistry, J.5
Mitchell, A.L.6
Potter, S.C.7
Punta, M.8
Qureshi, M.9
Sangrador-Vegas, A.10
Salazar, G.A.11
Tate, J.12
Bateman, A.13
-
36
-
-
84938924256
-
Defects in polynucleotide phosphorylase impairs virulence in Escherichia coli O157:H7
-
Hu J, Zhu MJ. 2015. Defects in polynucleotide phosphorylase impairs virulence in Escherichia coli O157:H7. Front Microbiol 6:806. https://doi.org/10.3389/fmicb.2015.00806.
-
(2015)
Front Microbiol
, vol.6
, pp. 806
-
-
Hu, J.1
Zhu, M.J.2
-
37
-
-
84884286187
-
Revenge of the phages: Defeating bacterial defences
-
Samson JE, Magadán AH, Sabri M, Moineau S. 2013. Revenge of the phages: defeating bacterial defences. Nat Rev Microbiol 11:675– 687. https://doi.org/10.1038/nrmicro3096.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 675-687
-
-
Samson, J.E.1
Magadán, A.H.2
Sabri, M.3
Moineau, S.4
-
38
-
-
0037418230
-
The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: Identifying a surface that binds sigma 54
-
Bordes P, Wigneshweraraj SR, Schumacher J, Zhang X, Chaney M, Buck M. 2003. The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54. Proc Natl Acad Sci U S A 100:2278 –2283. https://doi.org/10.1073/pnas.0537525100.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
-
-
Bordes, P.1
Wigneshweraraj, S.R.2
Schumacher, J.3
Zhang, X.4
Chaney, M.5
Buck, M.6
-
39
-
-
20444476586
-
Structural basis for the function of stringent starvation protein a as a transcription factor
-
Hansen AM, Gu Y, Li M, Andrykovitch M, Waugh DS, Jin DJ, Ji X. 2005. Structural basis for the function of stringent starvation protein a as a transcription factor. J Biol Chem 280:17380 –17391. https://doi.org/10.1074/jbc.M501444200.
-
(2005)
J Biol Chem
, vol.280
-
-
Hansen, A.M.1
Gu, Y.2
Li, M.3
Andrykovitch, M.4
Waugh, D.S.5
Jin, D.J.6
Ji, X.7
-
40
-
-
79952779354
-
Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle
-
Eckert SE, Dziva F, Chaudhuri RR, Langridge GC, Turner DJ, Pickard DJ, Maskell DJ, Thomson NR, Stevens MP. 2011. Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle. J Bacteriol 193:1771–1776. https://doi.org/10.1128/JB. 01292-10.
-
(2011)
J Bacteriol
, vol.193
, pp. 1771-1776
-
-
Eckert, S.E.1
Dziva, F.2
Chaudhuri, R.R.3
Langridge, G.C.4
Turner, D.J.5
Pickard, D.J.6
Maskell, D.J.7
Thomson, N.R.8
Stevens, M.P.9
-
41
-
-
84964438057
-
The TraDIS toolkit: Sequencing and analysis for dense transposon mutant libraries
-
Barquist L, Mayho M, Cummins C, Cain AK, Boinett CJ, Page AJ, Langridge GC, Quail MA, Keane JA, Parkhill J. 2016. The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinformatics 32: 1109 –1111. https://doi.org/10.1093/bioinformatics/btw022.
-
(2016)
Bioinformatics
, vol.32
-
-
Barquist, L.1
Mayho, M.2
Cummins, C.3
Cain, A.K.4
Boinett, C.J.5
Page, A.J.6
Langridge, G.C.7
Quail, M.A.8
Keane, J.A.9
Parkhill, J.10
-
42
-
-
84901417347
-
Prokka: Rapid prokaryotic genome annotation
-
Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068 –2069. https://doi.org/10.1093/bioinformatics/btu153.
-
(2014)
Bioinformatics
, vol.30
-
-
Seemann, T.1
-
43
-
-
84954520557
-
The design and analysis of transposon insertion sequencing experiments
-
Chao MC, Abel S, Davis BM, Waldor MK. 2016. The design and analysis of transposon insertion sequencing experiments. Nat Rev Microbiol 14: 119 –128. https://doi.org/10.1038/nrmicro.2015.7.
-
(2016)
Nat Rev Microbiol
, vol.14
-
-
Chao, M.C.1
Abel, S.2
Davis, B.M.3
Waldor, M.K.4
-
44
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R. 2003. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100:9440 –9445. https://doi.org/10.1073/pnas.1530509100.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
-
-
Storey, J.D.1
Tibshirani, R.2
-
45
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640 – 6645. https://doi. org/10. 1073/pnas.120163297.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
-
-
Datsenko, K.A.1
Wanner, B.L.2
|