-
1
-
-
0036895178
-
Trends in indigenous foodborne disease and deaths, England and Wales: 1992 to 2000
-
Adak GK, Long SM, O'Brien SJ. Trends in indigenous foodborne disease and deaths, England and Wales: 1992 to 2000. Gut. 2002;51:832-41.
-
(2002)
Gut
, vol.51
, pp. 832-841
-
-
Adak, G.K.1
Long, S.M.2
O'Brien, S.J.3
-
2
-
-
0023820729
-
Illnesses associated with Escherichia coli O157:H7 infections. A broad clinical spectrum
-
Griffin PM, Ostroff SM, Tauxe RV, Greene KD, Wells JG, Lewis JH, et al. Illnesses associated with Escherichia coli O157:H7 infections. A broad clinical spectrum. AnnInternMed. 1988;109:705-12.
-
(1988)
AnnInternMed
, vol.109
, pp. 705-712
-
-
Griffin, P.M.1
Ostroff, S.M.2
Tauxe, R.V.3
Greene, K.D.4
Wells, J.G.5
Lewis, J.H.6
-
3
-
-
84871702878
-
Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak
-
Underwood AP, Dallman T, Thomson NR, Williams M, Harker K, Perry N, et al. Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak. JClinMicrobiol. 2013;51:232-7. doi:JCM.01696-12; 10.1128/JCM.01696-12.
-
(2013)
JClinMicrobiol
, vol.51
, pp. 232-237
-
-
Underwood, A.P.1
Dallman, T.2
Thomson, N.R.3
Williams, M.4
Harker, K.5
Perry, N.6
-
4
-
-
84884976663
-
Application of multilocus variable number tandem repeat analysis to monitor Verocytotoxin-producing Escherichia coli O157 phage type 8 in England and Wales: emergence of a profile associated with a national outbreak
-
115:1052-1058
-
Perry N, Cheasty T, Dallman T, Launders N, Willshaw G. Application of multilocus variable number tandem repeat analysis to monitor Verocytotoxin-producing Escherichia coli O157 phage type 8 in England and Wales: emergence of a profile associated with a national outbreak. JApplMicrobiol. 2013;115:1052-8. doi:115:1052-1058; 10.1111/jam.12303.
-
(2013)
JApplMicrobiol
, vol.115
, pp. 1052-1058
-
-
Perry, N.1
Cheasty, T.2
Dallman, T.3
Launders, N.4
Willshaw, G.5
-
5
-
-
84863938676
-
Large outbreak of verocytotoxin-producing Escherichia coli O157 infection in visitors to a petting farm in South East England, 2009
-
Ihekweazu C, Carroll K, Adak B, Smith G, Pritchard GC, Gillespie IA, et al. Large outbreak of verocytotoxin-producing Escherichia coli O157 infection in visitors to a petting farm in South East England, 2009. EpidemiolInfect. 2012;140:1400-13. doi:S0950268811002111;10.1017/S0950268811002111.
-
(2012)
EpidemiolInfect
, vol.140
, pp. 1400-1413
-
-
Ihekweazu, C.1
Carroll, K.2
Adak, B.3
Smith, G.4
Pritchard, G.C.5
Gillespie, I.A.6
-
6
-
-
84898662179
-
Evaluating the use of multilocus variable number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 as a routine public health tool in England
-
PONE-D-13-31410
-
Byrne L, Elson R, Dallman TJ, Perry N, Ashton P, Wain J, et al. Evaluating the use of multilocus variable number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 as a routine public health tool in England. PLoSOne. 2014;9:e85901. doi:10.1371/journal.pone.0085901; PONE-D-13-31410.
-
(2014)
PLoSOne
, vol.9
-
-
Byrne, L.1
Elson, R.2
Dallman, T.J.3
Perry, N.4
Ashton, P.5
Wain, J.6
-
7
-
-
84878201439
-
Experimental coevolution of species interactions
-
Brockhurst MA, Koskella B. Experimental coevolution of species interactions. Trends EcolEvol. 2013;28:367-75. doi:S0169-5347 (13) 00061-X;10.1016/j.tree.2013.02.009.
-
(2013)
Trends EcolEvol
, vol.28
, pp. 367-375
-
-
Brockhurst, M.A.1
Koskella, B.2
-
8
-
-
0036169156
-
Expression of receptors for verotoxin 1 from Escherichia coli O157 on bovine intestinal epithelium
-
Hoey DE, Currie C, Else RW, Nutikka A, Lingwood CA, Gally DL, et al. Expression of receptors for verotoxin 1 from Escherichia coli O157 on bovine intestinal epithelium. J Med Microbiol. 2002;51:143-9.
-
(2002)
J Med Microbiol
, vol.51
, pp. 143-149
-
-
Hoey, D.E.1
Currie, C.2
Else, R.W.3
Nutikka, A.4
Lingwood, C.A.5
Gally, D.L.6
-
9
-
-
0035477452
-
Diversification of Escherichia coli genomes: are bacteriophages the major contributors?
-
Ohnishi M, Kurokawa K, Hayashi T. Diversification of Escherichia coli genomes: are bacteriophages the major contributors? Trends Microbiol. 2001;9:481-5. doi:S0966-842X (01) 02173-4.
-
(2001)
Trends Microbiol
, vol.9
, pp. 481-485
-
-
Ohnishi, M.1
Kurokawa, K.2
Hayashi, T.3
-
10
-
-
0035120334
-
Bacteriophage K1-5 encodes two different tail fiber proteins, allowing it to infect and replicate on both K1 and K5 strains of Escherichia coli
-
Scholl D, Rogers S, Adhya S, Merril CR. Bacteriophage K1-5 encodes two different tail fiber proteins, allowing it to infect and replicate on both K1 and K5 strains of Escherichia coli. JVirol. 2001;75:2509-15. doi:10.1128/JVI.75.6.2509-2515.2001.
-
(2001)
JVirol
, vol.75
, pp. 2509-2515
-
-
Scholl, D.1
Rogers, S.2
Adhya, S.3
Merril, C.R.4
-
12
-
-
84873174809
-
Phage-bacteria infection networks
-
Weitz JS, Poisot T, Meyer JR, Flores CO, Valverde S, Sullivan MB, et al. Phage-bacteria infection networks. Trends Microbiol. 2013;21:82-91. doi:S0966-842X (12) 00200-4;10.1016/j.tim.2012.11.003.
-
(2013)
Trends Microbiol
, vol.21
, pp. 82-91
-
-
Weitz, J.S.1
Poisot, T.2
Meyer, J.R.3
Flores, C.O.4
Valverde, S.5
Sullivan, M.B.6
-
14
-
-
0037335488
-
Bacteriophage T4 genome
-
Miller ES, Kutter E, Mosig G, Arisaka F, Kunisawa T, Ruger W. Bacteriophage T4 genome. MicrobiolMolBiol Rev. 2003;67:86-156.
-
(2003)
MicrobiolMolBiol Rev
, vol.67
, pp. 86-156
-
-
Miller, E.S.1
Kutter, E.2
Mosig, G.3
Arisaka, F.4
Kunisawa, T.5
Ruger, W.6
-
15
-
-
84866172358
-
Escherichia coli O157:H7 typing phage V7 is a T4-like virus
-
86/18/10246
-
Kropinski AM, Lingohr EJ, Moyles DM, Chibeu A, Mazzocco A, Franklin K, et al. Escherichia coli O157:H7 typing phage V7 is a T4-like virus. JVirol. 2012;86:10246. doi:86/18/10246;10.1128/JVI.01642-12.
-
(2012)
JVirol
, vol.86
, pp. 10246
-
-
Kropinski, A.M.1
Lingohr, E.J.2
Moyles, D.M.3
Chibeu, A.4
Mazzocco, A.5
Franklin, K.6
-
16
-
-
84874527551
-
The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5
-
1743-422X-10-76
-
Kropinski AM, Waddell T, Meng J, Franklin K, Ackermann HW, Ahmed R, et al. The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5. VirolJ. 2013;10:76. doi:1743-422X-10-76;10.1186/1743-422X-10-76.
-
(2013)
VirolJ
, vol.10
, pp. 76
-
-
Kropinski, A.M.1
Waddell, T.2
Meng, J.3
Franklin, K.4
Ackermann, H.W.5
Ahmed, R.6
-
17
-
-
60349118910
-
Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen
-
FML1511
-
Perry LL, SanMiguel P, Minocha U, Terekhov AI, Shroyer ML, Farris LA, et al. Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen. FEMS MicrobiolLett. 2009;292:182-6. doi:FML1511;10.1111/j.1574-6968.2009.01511.x.
-
(2009)
FEMS MicrobiolLett
, vol.292
, pp. 182-186
-
-
Perry, L.L.1
SanMiguel, P.2
Minocha, U.3
Terekhov, A.I.4
Shroyer, M.L.5
Farris, L.A.6
-
18
-
-
0026045287
-
An improved method for the small scale preparation of bacteriophage DNA based on phage precipitation by zinc chloride
-
Santos MA. An improved method for the small scale preparation of bacteriophage DNA based on phage precipitation by zinc chloride. Nucleic Acids Res. 1991;19:5442.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 5442
-
-
Santos, M.A.1
-
19
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
gr.074492.107
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008;18:821-9. doi:gr.074492.107;10.1101/gr.074492.107.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
20
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
published online: March 18, 2014.
-
Seemann, T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014. doi:10.1093/bioinformatics/btu153First published online: March 18, 2014.
-
(2014)
Bioinformatics
-
-
Seemann, T.1
-
21
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. JComputBiol. 2012;19:455-77. doi:10.1089/cmb.2012.0021.
-
(2012)
JComputBiol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
-
23
-
-
77952696795
-
An efficient algortihm for optimizing bipartite modularity in bipartite networks
-
Liu X, Murata T. An efficient algortihm for optimizing bipartite modularity in bipartite networks. JACIII. 2010;14:408-15.
-
(2010)
JACIII
, vol.14
, pp. 408-415
-
-
Liu, X.1
Murata, T.2
-
24
-
-
85019263504
-
A weighted modularity algorithm for bipartite networks
-
Beckett, SJ. A weighted modularity algorithm for bipartite networks. figshare. 2014. http://dx.doi.org/10.6084/m9.figshare.999114 .
-
(2014)
figshare
-
-
Beckett, S.J.1
-
25
-
-
84923250410
-
FALCON: a software package for analysis of nestedness in bipartite networks
-
Beckett SJ, Boulton CA, Williams HT. FALCON: a software package for analysis of nestedness in bipartite networks. F1000Res. 2014;3:185. doi:10.12688/f1000research.4831.1.
-
(2014)
F1000Res
, vol.3
, pp. 185
-
-
Beckett, S.J.1
Boulton, C.A.2
Williams, H.T.3
-
26
-
-
49249087447
-
A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement
-
Almeida-Neto M, Guimaraes P, Guimaraes Jr PR, Loyola RD, Ulrich W. A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos. 2008;117:1227-39.
-
(2008)
Oikos
, vol.117
, pp. 1227-1239
-
-
Almeida-Neto, M.1
Guimaraes, P.2
Guimaraes, P.R.3
Loyola, R.D.4
Ulrich, W.5
-
27
-
-
0027331799
-
The measure of order and disorder in the distribution of species in fragmented habitat
-
Atmar W, Patterson BD. The measure of order and disorder in the distribution of species in fragmented habitat. Oecologia. 1993;96:373-82.
-
(1993)
Oecologia
, vol.96
, pp. 373-382
-
-
Atmar, W.1
Patterson, B.D.2
-
28
-
-
70349255569
-
-
R package version 2.0-10
-
Oksanen, J, Blanchet, FG, Kindt, R, Legendre, P, Minchin, PR, O'Hara, RB, Simpson, GL, Solymos, P, Stevens, MHH, Wagner H. vegan: community ecology package. R package version 2.0-10. 2013. http://CRAN.R-project.org/package=vegan .
-
(2013)
vegan: community ecology package
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
-
29
-
-
0032938427
-
Nested species subsets, gaps, and discrepancy
-
Brualdi RA, Sanderson JG. Nested species subsets, gaps, and discrepancy. Oecologia. 1999;119:256-64.
-
(1999)
Oecologia
, vol.119
, pp. 256-264
-
-
Brualdi, R.A.1
Sanderson, J.G.2
-
30
-
-
0042424615
-
The nested assembly of plant-animal mutualistic networks
-
9383-0387
-
Bascompte J, Patterson BD. The nested assembly of plant-animal mutualistic networks. Proc Natl Acad Sci U S A. 1993;100:9383-0387.
-
(1993)
Proc Natl Acad Sci U S A
, vol.100
-
-
Bascompte, J.1
Patterson, B.D.2
-
31
-
-
79961109150
-
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
-
1471-2164-12-402
-
Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMCGenomics. 2011;12:402. doi:1471-2164-12-402;10.1186/1471-2164-12-402.
-
(2011)
BMCGenomics
, vol.12
, pp. 402
-
-
Alikhan, N.F.1
Petty, N.K.2
Ben Zakour, N.L.3
Beatson, S.A.4
-
32
-
-
79953306448
-
Easyfig: a genome comparison visualizer
-
btr039
-
Sullivan MJ, Petty NK, Beatson SA. Easyfig: a genome comparison visualizer. Bioinformatics. 2011;27:1009-10. doi:btr039;10.1093/bioinformatics/btr039.
-
(2011)
Bioinformatics
, vol.27
, pp. 1009-1010
-
-
Sullivan, M.J.1
Petty, N.K.2
Beatson, S.A.3
-
33
-
-
84885047100
-
Predicting the public health benefit of vaccinating cattle against Escherichia coli O157
-
1304978110
-
Matthews L, Reeve R, Gally DL, Low JC, Woolhouse ME, McAteer SP, et al. Predicting the public health benefit of vaccinating cattle against Escherichia coli O157. Proc Natl Acad Sci U S A. 2013;110:16265-70. doi:1304978110;10.1073/pnas.1304978110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 16265-16270
-
-
Matthews, L.1
Reeve, R.2
Gally, D.L.3
Low, J.C.4
Woolhouse, M.E.5
McAteer, S.P.6
-
34
-
-
34447620875
-
The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities
-
Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, et al. The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities. JMolBiol. 2007;371:836-49. doi:S0022-2836 (07) 00756-5;10.1016/j.jmb.2007.05.083.
-
(2007)
JMolBiol
, vol.371
, pp. 836-849
-
-
Leiman, P.G.1
Battisti, A.J.2
Bowman, V.D.3
Stummeyer, K.4
Muhlenhoff, M.5
Gerardy-Schahn, R.6
-
35
-
-
78651138418
-
Host-induced modification of t-even phages due to defective glucosylation of their DNA
-
Hattman S, Fukasawa T. Host-induced modification of t-even phages due to defective glucosylation of their DNA. Proc Natl Acad Sci U S A. 1963;50:297-300.
-
(1963)
Proc Natl Acad Sci U S A
, vol.50
, pp. 297-300
-
-
Hattman, S.1
Fukasawa, T.2
-
36
-
-
25144479277
-
Gene order constrains adaptation in bacteriophage T7
-
Springman R, Badgett MR, Molineux IJ, Bull JJ. Gene order constrains adaptation in bacteriophage T7. Virology. 2005;341:141-52. doi:S0042-6822 (05) 00418-6;10.1016/j.virol.2005.07.008.
-
(2005)
Virology
, vol.341
, pp. 141-152
-
-
Springman, R.1
Badgett, M.R.2
Molineux, I.J.3
Bull, J.J.4
-
37
-
-
84886712023
-
Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks
-
rsfs20130033
-
Beckett SJ, Williams HT. Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks. Interface Focus. 2013;3:20130033. doi:10.1098/rsfs.2013.0033; rsfs20130033.
-
(2013)
Interface Focus
, vol.3
, pp. 20130033
-
-
Beckett, S.J.1
Williams, H.T.2
-
38
-
-
79961015810
-
Statistical structure of host-phage interactions
-
1101595108
-
Flores CO, Meyer JR, Valverde S, Farr L, Weitz JS. Statistical structure of host-phage interactions. Proc Natl Acad Sci U S A. 2011;108:E288-97. doi:1101595108;10.1073/pnas.1101595108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. E288-E297
-
-
Flores, C.O.1
Meyer, J.R.2
Valverde, S.3
Farr, L.4
Weitz, J.S.5
-
39
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
nrmicro2235
-
Rodriguez-Valera F, Martin-Cuadrado AB, Rodriguez-Brito B, Pasic L, Thingstad TF, Rohwer F, et al. Explaining microbial population genomics through phage predation. NatRevMicrobiol. 2009;7:828-36. doi:nrmicro2235;10.1038/nrmicro2235.
-
(2009)
NatRevMicrobiol
, vol.7
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.B.2
Rodriguez-Brito, B.3
Pasic, L.4
Thingstad, T.F.5
Rohwer, F.6
-
40
-
-
4644274269
-
Phage types and genotypes of shiga toxin-producing Escherichia coli O157:H7 isolates from humans and animals in spain: identification and characterization of two predominating phage types (PT2 and PT8)
-
42/9/4007
-
Mora A, Blanco M, Blanco JE, Alonso MP, Dhabi G, Thomson-Carter F, et al. Phage types and genotypes of shiga toxin-producing Escherichia coli O157:H7 isolates from humans and animals in spain: identification and characterization of two predominating phage types (PT2 and PT8). JClinMicrobiol. 2004;42:4007-15. doi:10.1128/JCM.42.9.4007-4015.2004;42/9/4007.
-
(2004)
JClinMicrobiol
, vol.42
, pp. 4007-4015
-
-
Mora, A.1
Blanco, M.2
Blanco, J.E.3
Alonso, M.P.4
Dhabi, G.5
Thomson-Carter, F.6
-
41
-
-
77952501214
-
Phage typing of Salmonella Typhimurium - is it still a useful tool for surveillance and outbreak investigation?
-
Baggesen DL, Sorensen G, Nielsen EM, Wegener HC. Phage typing of Salmonella Typhimurium - is it still a useful tool for surveillance and outbreak investigation? Euro Surveill. 2010;15:19471.
-
(2010)
Euro Surveill
, vol.15
, pp. 19471
-
-
Baggesen, D.L.1
Sorensen, G.2
Nielsen, E.M.3
Wegener, H.C.4
|