-
1
-
-
34548829078
-
A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide
-
Allen, G. C., M. A. Flores-Vergara, S. Krasynanski, S. Kumar, and W. F. Thompson 2006 A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat. Protoc. 1: 2320–2325. https://doi.org/10.1038/nprot.2006.384
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2320-2325
-
-
Allen, G.C.1
Flores-Vergara, M.A.2
Krasynanski, S.3
Kumar, S.4
Thompson, W.F.5
-
2
-
-
85005916167
-
Rapid mechanisms for generating genome diversity: Whole ploidy shifts, aneuploidy, and loss of heterozygosity
-
Bennett, R. J., A. Forche, and J. Berman, 2014 Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harb. Perspect. Med. 4: a019604. https://doi.org/10.1101/cshperspect.a019604
-
(2014)
Cold Spring Harb. Perspect. Med.
, vol.4
-
-
Bennett, R.J.1
Forche, A.2
Berman, J.3
-
3
-
-
84899427376
-
Transposable elements as stress adaptive capacitors induce genomic instability in fungal pathogen Magnaporthe oryzae
-
Chadha, S., and M. Sharma, 2014 Transposable elements as stress adaptive capacitors induce genomic instability in fungal pathogen Magnaporthe oryzae. PLoS One 9: e94415. https://doi.org/10.1371/journal.pone.0094415
-
(2014)
Plos One
, vol.9
-
-
Chadha, S.1
Sharma, M.2
-
4
-
-
79960957443
-
Multiple translocation of the AVR-pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species
-
Chuma, I., C. Isobe, Y. Hotta, K. Ibaragi, N. Futamata et al., 2011 Multiple translocation of the AVR-pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLoS Pathog. 7: e1002147. https://doi.org/10.1371/journal.ppat.1002147
-
(2011)
Plos Pathog
, vol.7
-
-
Chuma, I.1
Isobe, C.2
Hotta, Y.3
Ibaragi, K.4
Futamata, N.5
-
5
-
-
70149110707
-
The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion
-
Coleman, J. J., S. D. Rounsley, M. Rodriguez-Carres, A. Kuo, C. C. Wasmann et al., 2009 The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet. 5: e1000618. https://doi.org/10.1371/journal.pgen.1000618
-
(2009)
Plos Genet
, vol.5
-
-
Coleman, J.J.1
Rounsley, S.D.2
Rodriguez-Carres, M.3
Kuo, A.4
Wasmann, C.C.5
-
6
-
-
84861196424
-
The accessory genome as a cradle for adaptive evolution in pathogens
-
Croll, D., and B. A. McDonald, 2012 The accessory genome as a cradle for adaptive evolution in pathogens. PLoS Pathog. 8: e1002608. https://doi.org/10.1371/journal.ppat.1002608
-
(2012)
Plos Pathog
, vol.8
-
-
Croll, D.1
McDonald, B.A.2
-
7
-
-
84879670944
-
Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen
-
Croll, D., M. Zala, and A. B. McDonald, 2013 Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen. PLoS Genet. 9: e1003567. https://doi.org/10.1371/journal.pgen.1003567
-
(2013)
Plos Genet
, vol.9
-
-
Croll, D.1
Zala, M.2
McDonald, A.B.3
-
8
-
-
84946900562
-
The impact of recombination hotspots on genome evolution of a fungal plant pathogen
-
Croll, D., M. H. Lendenmann, E. Stewart, and B. A. McDonald, 2015 The impact of recombination hotspots on genome evolution of a fungal plant pathogen. Genetics 201: 1213–1228. https://doi.org/10.1534/genetics.115.180968
-
(2015)
Genetics
, vol.201
, pp. 1213-1228
-
-
Croll, D.1
Lendenmann, M.H.2
Stewart, E.3
McDonald, B.A.4
-
9
-
-
84881145993
-
Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
-
de Jonge, R., M. D. Bolton, A. Kombrink, G. C. van den Berg, K. A. Yadeta et al., 2013 Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Res. 23: 1271–1282. https://doi.org/10.1101/gr.152660.112
-
(2013)
Genome Res
, vol.23
, pp. 1271-1282
-
-
de Jonge, R.1
Bolton, M.D.2
Kombrink, A.3
van den Berg, G.C.4
Yadeta, K.A.5
-
10
-
-
84929687941
-
The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola
-
Dhillon, B., N. Gill, R. C. Hamelin, and S. B. Goodwin, 2014 The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola. BMC Genomics 15: 1132. https://doi.org/10.1186/1471-2164-15-1132
-
(2014)
BMC Genomics
, vol.15
, pp. 1132
-
-
Dhillon, B.1
Gill, N.2
Hamelin, R.C.3
Goodwin, S.B.4
-
11
-
-
84982953280
-
Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
-
Faino, L., M. F. Seidl, X. Shi-Kunne, M. Pauper, G. C. van den Berg et al., 2016 Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen. Genome Res. 26: 1091–1100. https://doi.org/10.1101/gr.204974.116
-
(2016)
Genome Res
, vol.26
, pp. 1091-1100
-
-
Faino, L.1
Seidl, M.F.2
Shi-Kunne, X.3
Pauper, M.4
van den Berg, G.C.5
-
12
-
-
84937577974
-
The impact of Septoria tritici Blotch disease on wheat: An EU perspective
-
Fones, H., and S. Gurr, 2015 The impact of Septoria tritici Blotch disease on wheat: an EU perspective. Fungal Genet. Biol. 79: 3– 7. https://doi.org/10.1016/j.fgb.2015.04.004
-
(2015)
Fungal Genet. Biol.
, vol.79
, pp. 3-7
-
-
Fones, H.1
Gurr, S.2
-
13
-
-
85051970277
-
Meiosis leads to pervasive copy-number variation and distorted inheritance of accessory chromosomes of the wheat pathogen Zymoseptoria tritici
-
Fouché, S., C. Plissonneau, B. A. McDonald, and D. Croll, 2018 Meiosis leads to pervasive copy-number variation and distorted inheritance of accessory chromosomes of the wheat pathogen Zymoseptoria tritici. Genome Biol. Evol. 10: 1416–1429. https://doi.org/10.1093/gbe/evy100
-
(2018)
Genome Biol. Evol.
, vol.10
, pp. 1416-1429
-
-
Fouché, S.1
Plissonneau, C.2
McDonald, B.A.3
Croll, D.4
-
14
-
-
13844312996
-
Chromosomal translocation and segmental duplication in Cryptococcus neoformans
-
Fraser, J. A., J. C. Huang, R. Pukkila-worley, J. A. Alspaugh, T. G. Mitchell et al., 2005 Chromosomal translocation and segmental duplication in Cryptococcus neoformans. Eukaryot. Cell 4: 401–406. https://doi.org/10.1128/EC.4.2.401-406.2005
-
(2005)
Eukaryot. Cell
, vol.4
, pp. 401-406
-
-
Fraser, J.A.1
Huang, J.C.2
Pukkila-Worley, R.3
Alspaugh, J.A.4
Mitchell, T.G.5
-
15
-
-
84900826142
-
Variability of chromosome structure in pathogenic fungi-of “ends and odds
-
Galazka, J. M., and M. Freitag, 2014 Variability of chromosome structure in pathogenic fungi-of “ends and odds.” Curr. Opin. Microbiol. 20: 19–26. https://doi.org/10.1016/j.mib.2014.04.002
-
(2014)
Curr. Opin. Microbiol.
, vol.20
, pp. 19-26
-
-
Galazka, J.M.1
Freitag, M.2
-
16
-
-
84982994244
-
Neurospora chromosomes are organized by blocks of importin alpha-dependent heterochromatin that are largely independent of H3K9me3
-
Galazka, J. M., A. D. Klocko, M. Uesaka, S. Honda, E. U. Selker et al., 2016 Neurospora chromosomes are organized by blocks of importin alpha-dependent heterochromatin that are largely independent of H3K9me3. Genome Res. 26: 1069–1080. https://doi.org/10.1101/gr.203182.115
-
(2016)
Genome Res
, vol.26
, pp. 1069-1080
-
-
Galazka, J.M.1
Klocko, A.D.2
Uesaka, M.3
Honda, S.4
Selker, E.U.5
-
17
-
-
79959834134
-
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis
-
Goodwin, S. B., S. B. M’barek, B. Dhillon, A. H. Wittenberg, C. F. Crane et al., 2011 Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet. 7: e1002070. https://doi.org/10.1371/journal.pgen.1002070
-
(2011)
Plos Genet
, vol.7
-
-
Goodwin, S.B.1
M’Barek, S.B.2
Dhillon, B.3
Wittenberg, A.H.4
Crane, C.F.5
-
18
-
-
84937570578
-
RNA-seq-based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements
-
Grandaubert, J., A. Bhattacharyya, and E. H. Stukenbrock, 2015 RNA-seq-based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements. G3 (Bethesda) 5: 1323–1333. https://doi.org/10.1534/g3.115.017731
-
(2015)
G3 (Bethesda)
, vol.5
, pp. 1323-1333
-
-
Grandaubert, J.1
Bhattacharyya, A.2
Stukenbrock, E.H.3
-
19
-
-
85039903797
-
Forward genetics approach reveals host-genotype dependent importance of accessory chromosomes in the fungal wheat pathogen Zymoseptoria tritici
-
Habig, M., J. Quade, and E. H. Stukenbrock, 2017 Forward genetics approach reveals host-genotype dependent importance of accessory chromosomes in the fungal wheat pathogen Zymoseptoria tritici. MBio 8: e01919-17. https://doi.org/10.1128/mBio.01919-17
-
(2017)
Mbio
, vol.8
-
-
Habig, M.1
Quade, J.2
Stukenbrock, E.H.3
-
20
-
-
85054808967
-
Meiotic drive of female-inherited supernumerary chromosomes in a pathogenic fungus
-
Habig, M., G. Kema, and E. H. Stukenbrock, 2018 Meiotic drive of female-inherited supernumerary chromosomes in a pathogenic fungus. bioRxiv. https://doi.org/10.1101/389650
-
(2018)
Biorxiv
-
-
Habig, M.1
Kema, G.2
Stukenbrock, E.H.3
-
21
-
-
84920871341
-
Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins
-
Harr, J. C., T. R. Luperchio, X. Wong, E. Cohen, S. J. Wheelan et al., 2015 Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins. J. Cell Biol. 208: 33–52. https://doi.org/10.1083/jcb.201405110
-
(2015)
J. Cell Biol.
, vol.208
, pp. 33-52
-
-
Harr, J.C.1
Luperchio, T.R.2
Wong, X.3
Cohen, E.4
Wheelan, S.J.5
-
22
-
-
85059491758
-
-
Haueisen, J., M. Moeller, C. J. Eschenbrenner, J. Grandaubert, H. Seybold et al., 2017 Extremely flexible infection programs in a fungal plant pathogen. bioRxiv 49: 229997. https://doi.org/10.1101/229997
-
(2017)
Extremely Flexible Infection Programs in a Fungal Plant Pathogen
, vol.49
-
-
Haueisen, J.1
Moeller, M.2
Eschenbrenner, C.J.3
Grandaubert, J.4
Seybold, H.5
-
23
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka, R., and R. Gentleman, 1996 R: a language for data analysis and graphics. J. Comput. Graph. Stat. 5: 299–314. https://doi. org/10.2307/1390807
-
(1996)
J. Comput. Graph. Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
24
-
-
0034875181
-
Spontaneous loss of a conditionally dispensable chromosome from the Alternaria alternata apple pathotype leads to loss of toxin production and pathogenicity
-
Johnson, L. J., R. D. Johnson, H. Akamatsu, A. Salamiah, H. Otani et al., 2001 Spontaneous loss of a conditionally dispensable chromosome from the Alternaria alternata apple pathotype leads to loss of toxin production and pathogenicity. Curr. Genet. 40: 65–72. https://doi.org/10.1007/s002940100233
-
(2001)
Curr. Genet.
, vol.40
, pp. 65-72
-
-
Johnson, L.J.1
Johnson, R.D.2
Akamatsu, H.3
Salamiah, A.4
Otani, H.5
-
25
-
-
84923643695
-
Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs
-
Kellner, R., A. Bhattacharyya, S. Poppe, T. Y. Hsu, R. B. Brem et al., 2014 Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs. Genome Biol. Evol. 6: 1353–1365. https://doi.org/10.1093/gbe/evu101
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 1353-1365
-
-
Kellner, R.1
Bhattacharyya, A.2
Poppe, S.3
Hsu, T.Y.4
Brem, R.B.5
-
26
-
-
85007427285
-
Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa
-
Klocko, A. D., T. Ormsby, J. M. Galazka, N. A. Leggett, M. Uesaka et al., 2016 Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa. Proc. Natl. Acad. Sci. USA 113: 15048–15053. https://doi.org/10.1073/pnas.1615546113
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 15048-15053
-
-
Klocko, A.D.1
Ormsby, T.2
Galazka, J.M.3
Leggett, N.A.4
Uesaka, M.5
-
27
-
-
84879997352
-
Characterization of chromosome stability in diploid, polyploid and hybrid yeast cells
-
Kumaran, R., S.-Y. Yang, and J.-Y. Leu, 2013 Characterization of chromosome stability in diploid, polyploid and hybrid yeast cells. PLoS One 8: e68094. https://doi.org/10.1371/journal. pone.0068094
-
(2013)
Plos One
, vol.8
-
-
Kumaran, R.1
Yang, S.-Y.2
Leu, J.-Y.3
-
28
-
-
0036723575
-
Population structure of mycosphaerella graminicola: From lesions to continents
-
Linde, C. C., J. Zhan, and B. A. McDonald, 2002 Population structure of mycosphaerella graminicola: from lesions to continents. Phytopathology 92: 946–955. https://doi.org/10.1094/PHYTO.2002.92.9.946
-
(2002)
Phytopathology
, vol.92
, pp. 946-955
-
-
Linde, C.C.1
Zhan, J.2
McDonald, B.A.3
-
29
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch, M., W. Sung, K. Morris, N. Coffey, C. R. Landry et al., 2008 A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. USA 105: 9272– 9277. https://doi.org/10.1073/pnas.0803466105
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
Sung, W.2
Morris, K.3
Coffey, N.4
Landry, C.R.5
-
30
-
-
77949714038
-
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
-
Ma, L. J., H. C. van der Does, K. A. Borkovich, J. J. Coleman, M. J. Daboussi et al., 2010 Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464: 367– 373. https://doi.org/10.1038/nature08850
-
(2010)
Nature
, vol.464
, pp. 367-373
-
-
Ma, L.J.1
van der Does, H.C.2
Borkovich, K.A.3
Coleman, J.J.4
Daboussi, M.J.5
-
31
-
-
0000813303
-
The production of homozygous deficient tissues with mutant characteristics by means of the aberrant mitotic behavior of ring-shaped chromosomes
-
McClintock, B., 1938 The production of homozygous deficient tissues with mutant characteristics by means of the aberrant mitotic behavior of ring-shaped chromosomes. Genetics 23: 315–376.
-
(1938)
Genetics
, vol.23
, pp. 315-376
-
-
McClintock, B.1
-
32
-
-
0001294157
-
The stability of broken ends of chromosomes in Zea Mays
-
McClintock, B., 1941 The stability of broken ends of chromosomes in Zea Mays. Genetics 26: 234–282.
-
(1941)
Genetics
, vol.26
, pp. 234-282
-
-
McClintock, B.1
-
33
-
-
0025881998
-
Chromosome length polymorphisms in a Septoria tritici population
-
McDonald, B A., and J. P. Martinez, 1991 Chromosome length polymorphisms in a Septoria tritici population. Curr. Genet. 19: 265–271. https://doi.org/10.1007/BF00355053
-
(1991)
Curr. Genet.
, vol.19
, pp. 265-271
-
-
McDonald, B.A.1
Martinez, J.P.2
-
34
-
-
84963959878
-
Utilizing gene tree variation to identify candidate effector genes in Zymoseptoria tritici
-
McDonald, M. C., L. McGinness, J. K. Hane, A. H. Williams, A. Milgate et al., 2016 Utilizing gene tree variation to identify candidate effector genes in Zymoseptoria tritici. G3 (Bethesda) 6: 779–791. https://doi.org/10.1534/g3.115.025197
-
(2016)
G3 (Bethesda)
, vol.6
, pp. 779-791
-
-
McDonald, M.C.1
McGinness, L.2
Hane, J.K.3
Williams, A.H.4
Milgate, A.5
-
35
-
-
84861851519
-
Cancer chromosomal instability: Therapeutic and diagnostic challenges
-
McGranahan, N., R. A. Burrell, D. Endesfelder, M. R. Novelli, and C. Swanton, 2012 Cancer chromosomal instability: therapeutic and diagnostic challenges. EMBO Rep. 13: 528–538. https://doi.org/10.1038/embor.2012.61
-
(2012)
EMBO Rep
, vol.13
, pp. 528-538
-
-
McGranahan, N.1
Burrell, R.A.2
Endesfelder, D.3
Novelli, M.R.4
Swanton, C.5
-
36
-
-
38849120550
-
Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range
-
Mehrabi, R., M. Taga, and G. H. J. Kema, 2007 Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range. Mycologia 99: 868–876. https://doi.org/10. 1080/15572536.2007.11832518
-
(2007)
Mycologia
, vol.99
, pp. 868-876
-
-
Mehrabi, R.1
Taga, M.2
Kema, G.H.J.3
-
37
-
-
0026348015
-
A fungal gene for antibiotic resistance on a dispensable (“B”) chromosome
-
Miao, V. P., S. F. Covert, and H. D. VanEtten, 1991 A fungal gene for antibiotic resistance on a dispensable (“B”) chromosome. Science 254: 1773–1776. https://doi.org/10.1126/science.1763326
-
(1991)
Science
, vol.254
, pp. 1773-1776
-
-
Miao, V.P.1
Covert, S.F.2
Vanetten, H.D.3
-
38
-
-
84855485251
-
Telomere dysfunction and chromosome instability
-
Murnane, J. P., 2012 Telomere dysfunction and chromosome instability. Mutat. Res. 730: 28–36. https://doi.org/10.1016/j. mrfmmm.2011.04.008
-
(2012)
Mutat. Res.
, vol.730
, pp. 28-36
-
-
Murnane, J.P.1
-
39
-
-
84908200592
-
Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors
-
Persoons, A., E. Morin, C. Delaruelle, T. Payen, F. Halkett et al., 2014 Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors. Front. Plant Sci. 5: 450. https://doi.org/10.3389/fpls.2014.00450
-
(2014)
Front. Plant Sci.
, vol.5
, pp. 450
-
-
Persoons, A.1
Morin, E.2
Delaruelle, C.3
Payen, T.4
Halkett, F.5
-
40
-
-
85021130213
-
Complex interactions between fungal avirulence genes and their corresponding plant resistance genes and consequences for disease resistance management
-
Petit-Houdenot, Y., and I. Fudal, 2017 Complex interactions between fungal avirulence genes and their corresponding plant resistance genes and consequences for disease resistance management. Front. Plant Sci. 8: 1072. https://doi.org/10.3389/fpls.2017.01072
-
(2017)
Front. Plant Sci.
, vol.8
, pp. 1072
-
-
Petit-Houdenot, Y.1
Fudal, I.2
-
41
-
-
84994469211
-
The evolution of orphan regions in genomes of a fungal pathogen of wheat
-
Plissonneau, C., A. Stürchler, and D. Croll, 2016 The evolution of orphan regions in genomes of a fungal pathogen of wheat. MBio 7: e01231–e16. https://doi.org/10.1128/mBio.01231-16
-
(2016)
Mbio
, vol.7
-
-
Plissonneau, C.1
Stürchler, A.2
Croll, D.3
-
42
-
-
62449137037
-
Formation of new chromosomes as a virulence mechanism in yeast Candida glabrata
-
Poláková, S., C. Blume, J. A. Zárate, M. Mentel, D. Jørck-Ramberg et al., 2009 Formation of new chromosomes as a virulence mechanism in yeast Candida glabrata. Proc. Natl. Acad. Sci. USA 106: 2688–2693. https://doi.org/10.1073/pnas.0809793106
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 2688-2693
-
-
Poláková, S.1
Blume, C.2
Zárate, J.A.3
Mentel, M.4
Jørck-Ramberg, D.5
-
44
-
-
84923674139
-
Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle def
-
Rudd, J. J., K. Kanyuka, K. Hassani-Pak, M. Derbyshire, A. Andongabo et al., 2015 Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle def. Plant Physiol. 167: 1158–1185. https://doi.org/10.1104/pp.114.255927
-
(2015)
Plant Physiol
, vol.167
, pp. 1158-1185
-
-
Rudd, J.J.1
Kanyuka, K.2
Hassani-Pak, K.3
Derbyshire, M.4
Andongabo, A.5
-
45
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
Schneider, C. A., W. S. Rasband, and K. W. Eliceiri, 2012 NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9: 671–675. https://doi.org/10.1038/nmeth.2089
-
(2012)
Nat. Methods
, vol.9
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
46
-
-
84942891889
-
Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes
-
Schotanus, K., J. L. Soyer, L. R. Connolly, J. Grandaubert, P. Happel et al., 2015 Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes. Epigenetics Chromatin 8: 41. https://doi.org/10.1186/s13072-015-0033-5
-
(2015)
Epigenetics Chromatin
, vol.8
, Issue.41
-
-
Schotanus, K.1
Soyer, J.L.2
Connolly, L.R.3
Grandaubert, J.4
Happel, P.5
-
47
-
-
85002158020
-
Chromatin biology impacts adaptive evolution of filamentous plant pathogens
-
Seidl, M. F., D. E. Cook, B. P. H. J. Thomma, M. Seidl, B. Thomma et al., 2016 Chromatin biology impacts adaptive evolution of filamentous plant pathogens. PLoS Pathog. 12: e1005920. https://doi.org/10.1371/journal.ppat.1005920
-
(2016)
Plos Pathog
, vol.12
-
-
Seidl, M.F.1
Cook, D.E.2
Thomma, B.P.H.J.3
Seidl, M.4
Thomma, B.5
-
48
-
-
77956858683
-
Genomic plasticity of the human fungal pathogen Candida albicans
-
Selmecki, A., A. Forche, and J. Berman, 2010 Genomic plasticity of the human fungal pathogen Candida albicans. Eukaryot. Cell 9: 991–1008. https://doi.org/10.1128/EC.00060-10
-
(2010)
Eukaryot. Cell
, vol.9
, pp. 991-1008
-
-
Selmecki, A.1
Forche, A.2
Berman, J.3
-
49
-
-
84863722978
-
Cancer-associated alteration of pericentromeric heterochromatin may contribute to chromosome instability
-
Slee, R. B., C. M. Steiner, B. S. Herbert, G. H. Vance, R. J. Hickey et al., 2012 Cancer-associated alteration of pericentromeric heterochromatin may contribute to chromosome instability. Oncogene 31: 3244–3253. https://doi.org/10.1038/onc.2011.502
-
(2012)
Oncogene
, vol.31
, pp. 3244-3253
-
-
Slee, R.B.1
Steiner, C.M.2
Herbert, B.S.3
Vance, G.H.4
Hickey, R.J.5
-
50
-
-
79961194036
-
SyMAP v3.4: A turnkey synteny system with application to plant genomes
-
Soderlund, C., M. Bomhoff, and W. M. Nelson, 2011 SyMAP v3.4: a turnkey synteny system with application to plant genomes. Nucleic Acids Res. 39: e68. https://doi.org/10.1093/nar/gkr123
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Soderlund, C.1
Bomhoff, M.2
Nelson, W.M.3
-
51
-
-
0016700864
-
Detection of specific sequences among DNA fragments separated by gel electrophoresis
-
Southern, E. M., 1975 Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98: 503–517. https://doi.org/10.1016/S0022-2836(75)80083-0
-
(1975)
J. Mol. Biol.
, vol.98
, pp. 503-517
-
-
Southern, E.M.1
-
52
-
-
85007454025
-
Growthcurver: An R package for obtaining interpretable metrics from microbial growth curves
-
Sprouffske, K., and A. Wagner, 2016 Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves. BMC Bioinformatics 17: 172. https://doi.org/10.1186/s12859-016-1016-7
-
(2016)
BMC Bioinformatics
, vol.17
, Issue.172
-
-
Sprouffske, K.1
Wagner, A.2
-
53
-
-
84975064051
-
An improved method for measuring quantitative resistance to the wheat pathogen Zymoseptoria tritici using high throughput automated image analysis
-
Stewart, E. L., C. H. Hagerty, A. Mikaberidze, C. Mundt, Z. Zhong et al., 2016 An improved method for measuring quantitative resistance to the wheat pathogen Zymoseptoria tritici using high throughput automated image analysis. Phytopathology 106: 782–788. https://doi.org/10.1094/PHYTO-01-16-0018-R
-
(2016)
Phytopathology
, vol.106
, pp. 782-788
-
-
Stewart, E.L.1
Hagerty, C.H.2
Mikaberidze, A.3
Mundt, C.4
Zhong, Z.5
-
54
-
-
85042561509
-
Fine-scale recombination maps of fungal plant pathogens reveal dynamic recombination landscapes and intragenic hotspots
-
Stukenbrock, E. H., and J. Y. Dutheil, 2018 Fine-scale recombination maps of fungal plant pathogens reveal dynamic recombination landscapes and intragenic hotspots. Genetics 208: 1209–1229. https://doi.org/10.1534/genetics.117.300502
-
(2018)
Genetics
, vol.208
, pp. 1209-1229
-
-
Stukenbrock, E.H.1
Dutheil, J.Y.2
-
55
-
-
78650695340
-
Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola
-
Stukenbrock, E. H., F. G. Jørgensen, M. Zala, T. T. Hansen, B. A. McDonald et al., 2010 Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet. 6: e1001189. https://doi.org/10.1371/journal.pgen.1001189
-
(2010)
Plos Genet
, vol.6
-
-
Stukenbrock, E.H.1
Jørgensen, F.G.2
Zala, M.3
Hansen, T.T.4
McDonald, B.A.5
-
56
-
-
82955200227
-
The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
-
Stukenbrock, E. H., T. Bataillon, J. Y. Dutheil, T. T. Hansen, R. Li et al., 2011 The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res. 21: 2157–2166. https://doi.org/10.1101/gr.118851.110
-
(2011)
Genome Res
, vol.21
, pp. 2157-2166
-
-
Stukenbrock, E.H.1
Bataillon, T.2
Dutheil, J.Y.3
Hansen, T.T.4
Li, R.5
-
57
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdóttir, H., J. T. Robinson, and J. P. Mesirov, 2013 Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14: 178–192. https://doi.org/10.1093/bib/bbs017
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
58
-
-
84937565755
-
Zymoseptoria tritici: A major threat to wheat production, integrated approaches to control
-
Torriani, S. F. F., J. P. E. Melichar, C. Mills, N. Pain, H. Sierotzki et al., 2015 Zymoseptoria tritici: a major threat to wheat production, integrated approaches to control. Fungal Genet. Biol. 79: 8–12. https://doi.org/10.1016/j.fgb.2015.04.010
-
(2015)
Fungal Genet. Biol.
, vol.79
, pp. 8-12
-
-
Torriani, S.F.F.1
Melichar, J.P.E.2
Mills, C.3
Pain, N.4
Sierotzki, H.5
-
59
-
-
84959922420
-
Evolution of pathogenicity controlled by small, dispensable chromosomes in Alternaria alternata pathogens
-
Tsuge, T., Y. Harimoto, K. Hanada, Y. Akagi, M. Kodama et al., 2016 Evolution of pathogenicity controlled by small, dispensable chromosomes in Alternaria alternata pathogens. Physiol. Mol. Plant Pathol. 95: 27–31. https://doi.org/10.1016/j.pmpp.2016.02.009
-
(2016)
Physiol. Mol. Plant Pathol.
, vol.95
, pp. 27-31
-
-
Tsuge, T.1
Harimoto, Y.2
Hanada, K.3
Akagi, Y.4
Kodama, M.5
-
60
-
-
85039862589
-
Use of comparative genomics-based markers for discrimination of host specificity in Fusarium oxysporum
-
van Dam, P., M. de Sain, A. ter Horst, M. van der Gragt, and M. Rep, 2018 Use of comparative genomics-based markers for discrimination of host specificity in Fusarium oxysporum. Appl. Environ. Microbiol. 84: e01868–e01917. https://doi.org/10.1128/AEM.01868-17
-
(2018)
Appl. Environ. Microbiol
, vol.84
, pp. e01868-e01917
-
-
van Dam, P.1
de Sain, M.2
Ter Horst, A.3
van der Gragt, M.4
Rep, M.5
-
61
-
-
85011879576
-
Dispensable chromosomes in Fusarium oxysporum f. Sp. lycopersici
-
Vlaardingerbroek, I., B. Beerens, S. M. Schmidt, B. J. Cornelissen, and M. Rep, 2016 Dispensable chromosomes in Fusarium oxysporum f. sp. lycopersici. Mol. Plant Pathol. 17: 1455–1466. https://doi.org/10.1111/mpp.12440
-
(2016)
Mol. Plant Pathol.
, vol.17
, pp. 1455-1466
-
-
Vlaardingerbroek, I.1
Beerens, B.2
Schmidt, S.M.3
Cornelissen, B.J.4
Rep, M.5
-
62
-
-
33750936727
-
Genetic variation and population structure of Fusarium oxysporum f.Sp. vasinfectum in Australia
-
Wang, B., C. L. Brubaker, W. Tate, M. J. Woods, B. A. Matheson et al., 2006 Genetic variation and population structure of Fusarium oxysporum f.sp. vasinfectum in Australia. Plant Pathol. 55: 746–755. https://doi.org/10.1111/j.1365-3059.2006.01445.x
-
(2006)
Plant Pathol
, vol.55
, pp. 746-755
-
-
Wang, B.1
Brubaker, C.L.2
Tate, W.3
Woods, M.J.4
Matheson, B.A.5
-
63
-
-
67649200210
-
Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola
-
Wittenberg, A. H., T. A. van der Lee, S. Ben M’barek, S. B. Ware, S. B. Goodwin et al., 2009 Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola. PLoS One 4: e5863. https://doi.org/10.1371/journal.pone.0005863
-
(2009)
Plos One
, vol.4
-
-
Wittenberg, A.H.1
van der Lee, T.A.2
Ben M’Barek, S.3
Ware, S.B.4
Goodwin, S.B.5
-
64
-
-
79953801370
-
Thermal adaptation in the fungal pathogen Mycosphaerella graminicola
-
Zhan, J., and B. A. McDonald, 2011 Thermal adaptation in the fungal pathogen Mycosphaerella graminicola. Mol. Ecol. 20: 1689–1701. https://doi.org/10.1111/j.1365-294X.2011.05023.x
-
(2011)
Mol. Ecol.
, vol.20
, pp. 1689-1701
-
-
Zhan, J.1
McDonald, B.A.2
-
65
-
-
0037383062
-
The global genetic structure of the wheat pathogen Mycosphaerella graminicola is characterized by high nuclear diversity, low mitochondrial diversity, regular recombination, and gene flow
-
Zhan, J., R. E. Pettway, and B. A. McDonald, 2003 The global genetic structure of the wheat pathogen Mycosphaerella graminicola is characterized by high nuclear diversity, low mitochondrial diversity, regular recombination, and gene flow. Fungal Genet. Biol. 38: 286–297. https://doi.org/10.1016/S1087-1845(02)00538-8
-
(2003)
Fungal Genet. Biol.
, vol.38
, pp. 286-297
-
-
Zhan, J.1
Pettway, R.E.2
McDonald, B.A.3
-
66
-
-
85013059427
-
A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene
-
Zhong, Z., T. C. Marcel, F. E. Hartmann, X. Ma, C. Plissonneau et al., 2017 A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene. New Phytol. 214: 619–631. https://doi.org/10.1111/nph.14434
-
(2017)
New Phytol
, vol.214
, pp. 619-631
-
-
Zhong, Z.1
Marcel, T.C.2
Hartmann, F.E.3
Ma, X.4
Plissonneau, C.5
-
67
-
-
84901824457
-
Precise estimates of mutation rate and spectrum in yeast
-
Zhu, Y. O., M. L. Siegal, D. W. Hall, and D. A. Petrov, 2014 Precise estimates of mutation rate and spectrum in yeast. Proc. Natl. Acad. Sci. USA 111: E2310–E2318. https://doi.org/10.1073/pnas.1323011111
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E2310-E2318
-
-
Zhu, Y.O.1
Siegal, M.L.2
Hall, D.W.3
Petrov, D.A.4
|