Genetic variation and population structure of Fusarium oxysporum f.sp. vasinfectum in Australia

Plant Pathology

Volumn 55, Issue 6, 2006, Pages 746-755

  Wang, B ^a   Brubaker, C L ^a   Tate, W ^a   Woods, M J ^a   Matheson, B A ^a   Burdon, J J ^a  

^a CSIRO   (Australia)

Author keywords

AFLP; Cotton; Fusarium wilt; Genetic variation; Population structure

Indexed keywords

ANALYTICAL METHOD; COTTON; DISEASE INCIDENCE; FUNGUS; GENETIC VARIATION; GROWING SEASON; POPULATION STRUCTURE;

AUSTRALASIA; AUSTRALIA; NEW SOUTH WALES; QUEENSLAND;

FUSARIUM; FUSARIUM OXYSPORUM; GOSSYPIUM HIRSUTUM;

EID: 33750936727     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2006.01445.x     Document Type: Article

References (45)

1. Abd-Elsalam KA, Omar MR, Migheli Q, Nirenberg HI, 2004. Genetic characterization of Fusarium oxysporum f.sp. vasinfectum isolates by random amplification of polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP). Zeitschrift für Pflanzenkrankheiten und Pflanzenschutz 111, 534-44.
2. Abo K, Klein KK, Edel-Hermann V, Gautheron N, Traore D, Steingerg C, 2005. High genetic diversity among strains of Fusarium oxysporum f.sp. vasinfectum from cotton in Ivory Coast. Phytopathology 95, 1391-6.
3. Assigbetse KB, Fernandez D, Dubois MP, Geiger JP, 1994. Differentiation of Fusarium oxysporum f.sp. vasinfectum races on cotton by random amplified polymorphic DNA (RAPD) analysis. Phytopathology 84, 622-6.
4. Baayen RP, O'Donnell K, Bonants PJM, Cigelnik E, Kroon LPNM, Roebroeck EJA, Waalwijik C, 2000. Gene genealogies and AFLP analyses in the Fusarium oxysporum complex identify monophyletic and nonmonophyletic formae speciales causing wilt and rot disease. Phytopathology 90, 891-900.
5. Bao JR, Fravel DR, O'Neill RO, Lazarovits G, van Berkum P, 2002. Genetic analysis of pathogenic and non-pathogenic Fusarium oxysporum from tomato plants. Canadian Journal of Botany 80, 271-9.
6. Bentley S, Kochman JK, Moore NY, Pattemore JA, Gulino L, O'Neill WT, 2000. DNA diagnostics for fusarium wilt of cotton. Proceedings of the 10th Australian Cotton Conference, Brisbane. Brisbane, QLD, Australia: ACGR, 455-61.
7. Bentley S, Pegg KG, Moore NY, Davis RD, Buddenhagen IW, 1998. Genetic variation among vegetative compatibility groups of Fusarium oxysporum f.sp. cubense analysed by DNA fingerprinting. Phytopathology 88, 1283-93.
8. Burgess LW, Summerell BA, Bullock S, Gott KP, Backhouse D, 1994. Laboratory Manual for Fusarium Research. Sydney, Australia: University of Sydney.
9. Cai G, Gale LR, Schneider RW, Kistler HC, Davis RM, Elias KS, Miyao EM, 2003. Origin of race 3 of Fusarium oxysporum f.sp. lycopersici at a single site in California. Phytopathology 93, 1014-22.
10. Chen Q, Ji X, Sun W, 1985. Identification of races of cotton wilt Fusarium in China. Agricultural Science of China 6, 1-6.
11. Davis RD, Moore NY, Kochman JK, 1996. Characterisation of a population of Fusarium oxysporum f.sp. vasinfectum causing wilt of cotton in Australia. Australian Journal of Agricultural Research 47, 1143-56.
12. Elias KS, Schneider RW, 1991. Vegetative compatibility groups in Fusarium oxysporum f.sp. lycopersici. Phytopathology 81, 159-62.
13. Fernandez D, Assigbetse K, Dubois MP, Geiger JP, 1994. Molecular characterization of races and vegetative compatibility groups in Fusarium oxysporum f.sp. vasinfectum. Applied and Environmental Microbiology 60, 4039-46.
14. Gerlach KS, Bentley S, Moore NY, Pegg KG, Aitken EAB, 2000. Characterisation of Australian isolates of Fusarium oxysporum f.sp. cubense by DNA fingerprinting analysis. Australian Journal of Agricultural Research 51, 945-53.
15. Gordon TR, Martyn RD, 1997. The evolutionary biology of Fusarium oxysporum. Annual Review of Phytopathology 35, 111-28.
16. Hering O, Nirenberg HI, Kohn S, Deml G, 1999. Characterization of isolates of Fusarium oxysporum Schlecht. f.sp. vasinfectum (Atk.) Snyd. & Hans, races 1-6, by cellular fatty acid analysis. Journal of Phytopathology 147, 509-14.
17. Hillocks RJ, 1992. Fusarium wilt. In: Hillocks RJ, ed. Cotton Diseases. Wallingford, UK: CAB International, 127-60.
18. Hillocks RJ, Kibani THM, 2002. Factors affecting the distribution, incidence and spread of fusarium wilt of cotton in Tanzania. Experimental Agriculture 38, 13-27.
19. Jeffers DP, Smith SN, Garber RH, DeVay JE, 1984. The potential spread of the cotton Fusarium wilt pathogen in gin trash and planting seed. Phytopathology 74, 1139. (Abstract.)
20. Katan T, Katan J, 1999. Vegetative compatibility grouping in Fusarium oxysporum f.sp. radicis-lycopersici from the UK, the Netherlands, Belgium and France. Plant Pathology 48, 541-9.
21. Katan T, Katan J, Gordon TR, Pozniak D, 1994. Physiologic races and vegetative compatibility groups of Fusarium oxysporum f.sp. melonis in Israel. Phytopathology 84, 153-7.
22. Katan T, Zamir D, Sarfatti M, Katan J, 1991. Vegetative compatibility groups and subgroups in Fusarium oxysporum f.sp. radicis-lycopersici. Phytopathology 81, 255-62.
23. Kistler HC, 1997. Genetic diversity in the plant-pathogenic fungus Fusarium oxysporum. Phytopathology 87, 474-9.
24. Kochman JK, 1995. Fusarium wilt in cotton - a new record in Australia. Australasian Plant Pathology 24, 74.
25. Kochman JK, Swan L, Moore N, Bentley S, O'Neill W, Mitchell A, Obst N, Lehane J, Gulino LL, Salmond G, 2002. The Fusarium threat - are we making the progress?. Proceedings of the 11th Australian Cotton Conference, Brisbane. Brisbane, QLD, Australia: ACGR, 643-52.
26. Koenig RL, Ploetz RC, Kistler HC, 1997. Fusarium oxysporum f.sp. cubense consists of a small number of divergent and globally distributed clonal lineages. Phytopathology 87, 915-23.
27. Lori G, Edel-Hermann V, Gautheron N, Alabouvette C, 2004. Genetic diversity of pathogenic and non-pathogenic populations of Fusarium oxysporum isolated from carnation fields in Argentina. Phytopathology 94, 661-8.
28. Majer D, Mithen R, Lewis BG, Vos P, Oliver RP, 1996. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycological Research 100, 1107-11.
29. McDonald BA, Linde C, 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology 40, 349-79.
30. Molnar A, Sulyok L, Hornok L, 1990. Parasexual recombination between vegetatively incompatible strains in Fusarium oxysporum. Mycological Research 94, 393-8.
31. Nei M, 1987. Molecular Evolutionary Genetics. New York, USA: Columbia University Press.
32. Raymond ML, Rousset F, 1995. An exact test for population differentiation. Evolution 49, 1280-3.
33. Rosewich UL, Pettway RE, Katan T, Kistler HC, 1999. Population genetic analysis corroborates dispersal of Fusarium oxysporum f.sp. radicis-lycopersici from Florida to Europe. Phytopathology 89, 623-30.
34. Rutherford MA, Paterson RRM, Bridge PD, Brayford D, 1993. Coumarin utilization patterns of pathogenic races of Fusarium oxysporum causing vascular wilt of cotton. Journal of Phytopathology 138, 209-16.
35. Saleh AA, Zeller KA, Ismael A-SM, Fahmy ZM, El-Assiuty EM, Leslie JF, 2003. Amplified fragment length polymorphism diversity in Cephalosporium maydis from Egypt. Phytopathology 93, 853-9.
36. Schneider S, Roessli D, Excoffier L, 2000. Arlequin, Version 2.000: a Software for Population Genetics Data Analysis. Geneva, Switzerland: University of Geneva Genetics and Biometry Laboratory.
37. Sivaramakrishnan S, Kannan S, Singh SD, 2002. Genetic variability of Fusarium wilt pathogen isolates of chickpea (Cicer arietinum L.) assessed by molecular markers. Mycopathologia 155, 171-8.
38. Skovgaard K, Bodker L, Rosendahl S, 2002. Population structure and pathogenicity of members of the Fusarium oxysporum complex isolated from soil and root necrosis of pea (Pisum sativum L.). FEMS Microbiology Ecology 42, 367-74.
39. Skovgaard K, Nirenberg HI, O'Donnell K, Rosendahl S, 2001. Evolution of Fusarium oxysporum f.sp. vasinfectum races inferred from multigene genealogies. Phytopathology 91, 1231-7.
40. Slatkin M, 1987. Gene flow and geographic structure of natural populations. Science 236, 787-92.
41. Smith SN, DeVay JE, Hsieh W-H, Lee H-J, 2001. Soil-borne populations of Fusarium oxysporum f.sp. vasinfectum, a cotton wilt fungus in California fields. Mycologia 93, 737-43.
42. Smith SN, Snyder WC, 1975. Persistence of Fusarium oxysporum in fields in the absence of cotton. Phytopathology 65, 190-6.
43. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M, 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23, 4407-14.
44. Wang B, Brubaker CL, Burdon JJ, 2004. Fusarium species and fusarium wilt pathogens associated with native Gossypium populations in Australia. Mycological Research 108, 35-44.
45. Yeh FC, Rongcai Y, Boyle T, 1999. Popgene, Version 1.31. Edmonton, Canada: University of Alberta.