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Volumn 153, Issue 1, 2019, Pages 251-264

Onion yellow dwarf virus ∆∆Ct-based relative quantification obtained by using real-time polymerase chain reaction in ‘Rossa di Tropea’ onion

Author keywords

Onion bulb; OYDV; Plant virology; Reference gene; Rossa di Tropea; Ct

Indexed keywords

CULTIVAR; ENZYME; GENE; GENE EXPRESSION; HOST-PATHOGEN INTERACTION; POLYMERASE CHAIN REACTION; REAL TIME; SECONDARY METABOLITE; VEGETABLE; VIRUS;

EID: 85050959733     PISSN: 09291873     EISSN: 15738469     Source Type: Journal    
DOI: 10.1007/s10658-018-1560-2     Document Type: Article
Times cited : (8)

References (43)
  • 1
    • 84921510250 scopus 로고    scopus 로고
    • Aphid-transmission efficiency of two main viruses on garlic in Egypt, Onion Yellow Dwarf Virus (OYDV-G) and Leek Yellow Stripe Virus (LYSV-G)
    • Abd El-Wahab, A. S. (2009). Aphid-transmission efficiency of two main viruses on garlic in Egypt, Onion Yellow Dwarf Virus (OYDV-G) and Leek Yellow Stripe Virus (LYSV-G). Academic Journal of Entomology, 2(1), 40–42
    • (2009) Academic Journal of Entomology , vol.2 , Issue.1 , pp. 40-42
    • Abd El-Wahab, A.S.1
  • 3
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • PMID: 15289330
    • Andersen, C. L., Jensen, J. L., & Ørntoft, T. F. (2004). Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Research, 64, 5245–5250 PMID: 15289330
    • (2004) Cancer Research , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Ørntoft, T.F.3
  • 4
    • 84883256115 scopus 로고    scopus 로고
    • Anti-microbial and anti-oxidant activities of Illicium verum, Crataegus oxyacantha ssp monogyna and Allium cepa red and white varieties
    • Benmalek, Y., Yahia, O. A., Belkebir, A., & Fardeau, M. L. (2013). Anti-microbial and anti-oxidant activities of Illicium verum, Crataegus oxyacantha ssp monogyna and Allium cepa red and white varieties. Bioengineered, 4(4), 244–248
    • (2013) Bioengineered , vol.4 , Issue.4 , pp. 244-248
    • Benmalek, Y.1    Yahia, O.A.2    Belkebir, A.3    Fardeau, M.L.4
  • 5
    • 0344745328 scopus 로고
    • Onion yellow dwarf virus
    • Bos, L. (1976). Onion yellow dwarf virus. CMI/AAB Descriptions of Plant Viruses, 158(4) http://www.dpvweb.net/dpv/showdpv.php?dpvno=158
    • (1976) CMI/AAB Descriptions of Plant Viruses , vol.158 , Issue.4
    • Bos, L.1
  • 6
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • Brunner, A. M., Yakovlev, I. A., & Strauss, S. H. (2004). Validating internal controls for quantitative plant gene expression studies. BMC Plant Biology, 2229, 4–14
    • (2004) BMC Plant Biology , vol.2229 , pp. 4-14
    • Brunner, A.M.1    Yakovlev, I.A.2    Strauss, S.H.3
  • 8
    • 84872418138 scopus 로고    scopus 로고
    • Development of multiplex real-time PCR for simultaneous detection of three Potyviruses in tobacco plants
    • Dai, J., Peng, H., Chen, W., Cheng, J., & Wu, Y. (2013). Development of multiplex real-time PCR for simultaneous detection of three Potyviruses in tobacco plants. Journal of Applied Microbiology, 114(2), 502–508
    • (2013) Journal of Applied Microbiology , vol.114 , Issue.2 , pp. 502-508
    • Dai, J.1    Peng, H.2    Chen, W.3    Cheng, J.4    Wu, Y.5
  • 9
    • 70350203689 scopus 로고
    • The relationship of aphids to the transmission of yellow dwarf of onion
    • Drake, C. J., Tate, H. D., & Harris, H. M. (1933). The relationship of aphids to the transmission of yellow dwarf of onion. Journal of Economic Entomology, 26, 841–846
    • (1933) Journal of Economic Entomology , vol.26 , pp. 841-846
    • Drake, C.J.1    Tate, H.D.2    Harris, H.M.3
  • 10
    • 84945907127 scopus 로고    scopus 로고
    • Pathogenesis-related genes as tools for discovering the response of onion defence system against Iris yellow spot virus infection
    • El Morsi, A., Abdelkhalek, A., AlShehaby, O., & Hafez, E. E. (2015). Pathogenesis-related genes as tools for discovering the response of onion defence system against Iris yellow spot virus infection. Botany, 93, 1–10
    • (2015) Botany , vol.93 , pp. 1-10
    • El Morsi, A.1    Abdelkhalek, A.2    AlShehaby, O.3    Hafez, E.E.4
  • 11
    • 84921501275 scopus 로고    scopus 로고
    • Effect of natural infection with Onion yellow dwarf virus (OYDV) on yield of onion and garlic crops in Egypt
    • Elnagar, S., El-Sheikh, M. A. K., & Abd El-Wahab, A. S. (2011). Effect of natural infection with Onion yellow dwarf virus (OYDV) on yield of onion and garlic crops in Egypt. Journal of Life Science, 5, 634–638
    • (2011) Journal of Life Science , vol.5 , pp. 634-638
    • Elnagar, S.1    El-Sheikh, M.A.K.2    Abd El-Wahab, A.S.3
  • 12
    • 63149154853 scopus 로고    scopus 로고
    • Content of quercetin glycosides and fructooligosaccharides in onion stored in a cold room
    • Grzelak, K., Milala, J., Krol, B., Adamicki, F., & Badelek, E. (2009). Content of quercetin glycosides and fructooligosaccharides in onion stored in a cold room. European Food Research and Technology, 228, 1001–1007
    • (2009) European Food Research and Technology , vol.228 , pp. 1001-1007
    • Grzelak, K.1    Milala, J.2    Krol, B.3    Adamicki, F.4    Badelek, E.5
  • 13
    • 84922567390 scopus 로고    scopus 로고
    • The choice of reference genes for assessing gene expression in sugarcane under salinity and drought stresses
    • Guo, J., Ling, H., Wu, Q., Xu, L., & Que, Y. (2014). The choice of reference genes for assessing gene expression in sugarcane under salinity and drought stresses. Scientific Reports, 4, 7042
    • (2014) Scientific Reports , vol.4 , pp. 7042
    • Guo, J.1    Ling, H.2    Wu, Q.3    Xu, L.4    Que, Y.5
  • 15
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • Huggett, J., Dheda, K., Bustin, S., & Zumla, A. (2005). Real-time RT-PCR normalisation; strategies and considerations. Genes and Immunity, 6, 279–284
    • (2005) Genes and Immunity , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 16
    • 79959903517 scopus 로고    scopus 로고
    • Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR
    • Jarošová, J., & Kundu, J. (2010). Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR. BMC Plant Biology, 10, 146
    • (2010) BMC Plant Biology , vol.10 , pp. 146
    • Jarošová, J.1    Kundu, J.2
  • 18
    • 84921457445 scopus 로고    scopus 로고
    • Characterization, transmission and host range of onion yellow dwarf virus
    • Kumar, P., Dhawan, P., & Mehra, R. (2011). Characterization, transmission and host range of onion yellow dwarf virus. Plant Disease Research, 26(2), 176
    • (2011) Plant Disease Research , vol.26 , Issue.2 , pp. 176
    • Kumar, P.1    Dhawan, P.2    Mehra, R.3
  • 19
    • 84921525165 scopus 로고    scopus 로고
    • Symptoms and losses caused by Onion yellow dwarf virus and Iris yellow spot virus diseases of onion crop in Northen India
    • Kumar, P., Dhawan, P., & Mehra, R. (2012). Symptoms and losses caused by Onion yellow dwarf virus and Iris yellow spot virus diseases of onion crop in Northen India. Journal of Mycology and Plant Pathology, 42(1), 153–160
    • (2012) Journal of Mycology and Plant Pathology , vol.42 , Issue.1 , pp. 153-160
    • Kumar, P.1    Dhawan, P.2    Mehra, R.3
  • 20
    • 33645829809 scopus 로고    scopus 로고
    • The analysis of onion and garlic
    • Lanzotti, V. (2006). The analysis of onion and garlic. Journal of Chromatography A, 1112, 3–22
    • (2006) Journal of Chromatography A , vol.1112 , pp. 3-22
    • Lanzotti, V.1
  • 21
    • 79951521045 scopus 로고    scopus 로고
    • Identification and validation of reference genes for normalization of transcripts from virus-infected Arabidopsis thaliana
    • Lilly, S. T., Drummond, R. S., Pearson, M. N., & Macdiarmid, R. M. (2011). Identification and validation of reference genes for normalization of transcripts from virus-infected Arabidopsis thaliana. Molecular Plant Microbe Interaction, 24, 294–304
    • (2011) Molecular Plant Microbe Interaction , vol.24 , pp. 294-304
    • Lilly, S.T.1    Drummond, R.S.2    Pearson, M.N.3    Macdiarmid, R.M.4
  • 22
    • 84878362736 scopus 로고    scopus 로고
    • A one step real-time RT-PCR assay for the quantitation of Wheat yellow mosaic virus (WYMV)
    • Liu, W., Zhao, X., Zhang, P., Mar, T. T., Liu, Y., Zhang, Z., Han, C., & Wan, X. (2013). A one step real-time RT-PCR assay for the quantitation of Wheat yellow mosaic virus (WYMV). Virology Journal, 10, 173
    • (2013) Virology Journal , vol.10 , pp. 173
    • Liu, W.1    Zhao, X.2    Zhang, P.3    Mar, T.T.4    Liu, Y.5    Zhang, Z.6    Han, C.7    Wan, X.8
  • 23
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-tme quantitative PCR and the 2-∆∆Ct method
    • Livak, K. J., & Schmittgen, T. (2001). Analysis of relative gene expression data using real-tme quantitative PCR and the 2-∆∆Ct method. Methods, 25, 402–408
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.2
  • 24
    • 84856778846 scopus 로고    scopus 로고
    • Reference genes for accurate transcript normalization in citrus genotypes under different experimental conditions
    • Mafra, V., Kubo, K. S., Alves-Ferreira, M., Ribeiro-Alves, M., Stuart, R. M., & Boava, L. P. (2012). Reference genes for accurate transcript normalization in citrus genotypes under different experimental conditions. PLoS One, 7(2), e31263
    • (2012) PLoS One , vol.7 , Issue.2
    • Mafra, V.1    Kubo, K.S.2    Alves-Ferreira, M.3    Ribeiro-Alves, M.4    Stuart, R.M.5    Boava, L.P.6
  • 25
    • 84921458588 scopus 로고    scopus 로고
    • Molecular analysis of the 3’terminal region of Onion yellow dwarf virus from onion in southern Italy
    • Manglli, A., Mohamed, H. S., El Hussein, A. A., Agosteo, G. E., Albanese, G., & Tomassoli, L. (2014). Molecular analysis of the 3’terminal region of Onion yellow dwarf virus from onion in southern Italy. Phytopathologia Mediterranea, 53(3), 438–450. 10.14601/Phytopathol_Mediterr-14027
    • (2014) Phytopathologia Mediterranea , vol.53 , Issue.3 , pp. 438-450
    • Manglli, A.1    Mohamed, H.S.2    El Hussein, A.A.3    Agosteo, G.E.4    Albanese, G.5    Tomassoli, L.6
  • 26
    • 84921445212 scopus 로고
    • Virosi delle liliaceae ortive: Cipolla, aglio, porro
    • Reda Editore per l'Agricoltura (Ed), Roma Italy
    • Marani F., Bertaccini A. (1983) Virosi delle liliaceae ortive: cipolla, aglio, porro. In: Le virosi delle piante ortive. Reda Editore per l'Agricoltura (Ed), Roma Italy, 104–111
    • (1983) Le Virosi Delle Piante Ortive , pp. 104-111
    • Marani, F.1    Bertaccini, A.2
  • 27
    • 77957291480 scopus 로고    scopus 로고
    • Evaluation of reference genes for quantitative reverse-transcription polymerase chain reaction normalization in infected tomato plants
    • Mascia, T., Santovito, E., Gallitelli, D., & Cillo, F. (2010). Evaluation of reference genes for quantitative reverse-transcription polymerase chain reaction normalization in infected tomato plants. Molecular Plant Pathology, 11(6), 805–816
    • (2010) Molecular Plant Pathology , vol.11 , Issue.6 , pp. 805-816
    • Mascia, T.1    Santovito, E.2    Gallitelli, D.3    Cillo, F.4
  • 29
    • 84860400161 scopus 로고    scopus 로고
    • Reference genes for reliable potyvirus quantitation in cassava and analysis of cassava brown streak virus load in host varieties
    • Moreno, I., Gruissem, W., & Vanderschuren, H. (2011). Reference genes for reliable potyvirus quantitation in cassava and analysis of cassava brown streak virus load in host varieties. Journal of Virological Methods, 177, 49–54
    • (2011) Journal of Virological Methods , vol.177 , pp. 49-54
    • Moreno, I.1    Gruissem, W.2    Vanderschuren, H.3
  • 31
    • 84921445075 scopus 로고    scopus 로고
    • Outbreaks of Onion yellow dwarf virus (OYDV) on onion crops in Calabria (southern Italy)
    • Parrella, G., De Stradis, A., Volvas, C., & Agosteo, G. E. (2005). Outbreaks of Onion yellow dwarf virus (OYDV) on onion crops in Calabria (southern Italy). Journal of Plant Pathology, 87(4), 302
    • (2005) Journal of Plant Pathology , vol.87 , Issue.4 , pp. 302
    • Parrella, G.1    De Stradis, A.2    Volvas, C.3    Agosteo, G.E.4
  • 33
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper–excel-based tool using pairwise correlations
    • PMID: 15127793
    • Pfaffl, M. W., Tichopad, A., Prgomet, C., & Neuvians, T. P. (2004). Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper–excel-based tool using pairwise correlations. Biotechnology Letters, 26, 509–515 PMID: 15127793
    • (2004) Biotechnology Letters , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 34
    • 84947605348 scopus 로고    scopus 로고
    • Reference gene selection for normalization of RT-qPCR gene expression data from Actinidia deliciosa leaves infected with Pseudomonas syringae pv
    • Petriccione, M., Mastrobuoni, F., Zampella, L., & Scortichini, M. (2015). Reference gene selection for normalization of RT-qPCR gene expression data from Actinidia deliciosa leaves infected with Pseudomonas syringae pv. Actinidiae. Scientific Reports, 5, 16961. 10.1038/srep16961
    • (2015) Actinidiae. Scientific Reports , vol.5 , pp. 16961
    • Petriccione, M.1    Mastrobuoni, F.2    Zampella, L.3    Scortichini, M.4
  • 37
    • 84905721130 scopus 로고    scopus 로고
    • Analysis of qPCR reference gene stability determination methods and a practical approach for efficiency calculation on a turbot (Scophthalmus maximus) gonad dataset
    • Robledo, D., Hernandex-Urcera, J., Cal, R. M., Pardo, B. G., Sanchez, L., Martinez, P., & Vinas, A. (2014). Analysis of qPCR reference gene stability determination methods and a practical approach for efficiency calculation on a turbot (Scophthalmus maximus) gonad dataset. BMC Genomics, 15, 648
    • (2014) BMC Genomics , vol.15 , pp. 648
    • Robledo, D.1    Hernandex-Urcera, J.2    Cal, R.M.3    Pardo, B.G.4    Sanchez, L.5    Martinez, P.6    Vinas, A.7
  • 38
    • 80054908776 scopus 로고    scopus 로고
    • Isolation of total RNA from tissues rich in polyphenols and polysaccharides of mangrove plants
    • Rubio-Pina, J. A., & Zapata-Perez, O. (2011). Isolation of total RNA from tissues rich in polyphenols and polysaccharides of mangrove plants. Electronic Journal of Biotechnology, 14, 5
    • (2011) Electronic Journal of Biotechnology , vol.14 , pp. 5
    • Rubio-Pina, J.A.1    Zapata-Perez, O.2
  • 40
    • 1542316326 scopus 로고    scopus 로고
    • Antimutagenic, antioxidant and free radical scavenging activity of ethyl acetate extracts from white, yellow and red onions
    • Shon, M. Y., Choi, S. D., Kahng, G. G., Nam, S. H., & Sung, N. J. (2004). Antimutagenic, antioxidant and free radical scavenging activity of ethyl acetate extracts from white, yellow and red onions. Food and Chemical Toxicology, 42, 659–666
    • (2004) Food and Chemical Toxicology , vol.42 , pp. 659-666
    • Shon, M.Y.1    Choi, S.D.2    Kahng, G.G.3    Nam, S.H.4    Sung, N.J.5
  • 41
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • PMID: 12184808
    • Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., & Van Roy, N. (2002). Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology, 3, research0034 PMID: 12184808
    • (2002) Genome Biology , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5
  • 42
    • 34250080824 scopus 로고
    • Survey and characterization of potyviruses and their strains of Allium species. Netherlands
    • (suppl
    • Van Dijk, P. (1993). Survey and characterization of potyviruses and their strains of Allium species. Netherlands. Journal of Plant Pathology, 99 (suppl.)(2), 1–48
    • (1993) Journal of Plant Pathology , vol.99 , Issue.2 , pp. 1-48
    • Van Dijk, P.1
  • 43
    • 84871752794 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in Caragana intermedia under different abiotic stress conditions
    • Zhu, J., Zhang, L., Li, W., Han, S., Yang, W., & Qi, L. (2013). Reference gene selection for quantitative real-time PCR normalization in Caragana intermedia under different abiotic stress conditions. PLoS One, 8, e53196
    • (2013) PLoS One , vol.8
    • Zhu, J.1    Zhang, L.2    Li, W.3    Han, S.4    Yang, W.5    Qi, L.6


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