메뉴 건너뛰기




Volumn 11, Issue 6, 2010, Pages 805-816

Evaluation of reference genes for quantitative reverse-transcription polymerase chain reaction normalization in infected tomato plants

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; ASCORBATE PEROXIDASE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE (NADP); NUCLEOSIDE MONOPHOSPHATE KINASE; PEROXIDASE; RNA 18S; SUPEROXIDE DISMUTASE; UBIQUITIN; URIDINE PHOSPHATE KINASE; VEGETABLE PROTEIN;

EID: 77957291480     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/j.1364-3703.2010.00646.x     Document Type: Article
Times cited : (135)

References (41)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen CL, Jensen JL, Orntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 2
    • 0018131415 scopus 로고
    • Characterization of a second protein associated with virions of tobacco mosaic virus
    • Asselin A, Zaitlin M. Characterization of a second protein associated with virions of tobacco mosaic virus. Virology 1978, 91:173-181.
    • (1978) Virology , vol.91 , pp. 173-181
    • Asselin, A.1    Zaitlin, M.2
  • 3
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • Bustin SA. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J. Mol. Endocrinol. 2000, 25:169-193.
    • (2000) J. Mol. Endocrinol. , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 4
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems
    • Bustin SA. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J. Mol. Endocrinol. 2002, 29:23-39.
    • (2002) J. Mol. Endocrinol. , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 6
    • 72949087809 scopus 로고    scopus 로고
    • Comparative analysis of expression profiles in shoots and roots of tomato systemically infected by tomato spotted wilt virus reveals organ-specific transcriptional responses
    • Catoni M, Miozzi L, Fiorilli V, Lanfranco L, Accotto GP. Comparative analysis of expression profiles in shoots and roots of tomato systemically infected by tomato spotted wilt virus reveals organ-specific transcriptional responses. Mol. Plant-Microbe Interact. 2009, 22:1504-1513.
    • (2009) Mol. Plant-Microbe Interact. , vol.22 , pp. 1504-1513
    • Catoni, M.1    Miozzi, L.2    Fiorilli, V.3    Lanfranco, L.4    Accotto, G.P.5
  • 7
    • 36248945634 scopus 로고    scopus 로고
    • Response of tomato and its wild relatives in the genus Solanum to cucumber mosaic virus and satellite RNA combinations
    • Cillo F, Pasciuto MM, De Giovanni C, Finetti-Sialer MM, Ricciardi L, Gallitelli D. Response of tomato and its wild relatives in the genus Solanum to cucumber mosaic virus and satellite RNA combinations. J. Gen. Virol. 2007, 88:3166-3176.
    • (2007) J. Gen. Virol. , vol.88 , pp. 3166-3176
    • Cillo, F.1    Pasciuto, M.M.2    De Giovanni, C.3    Finetti-Sialer, M.M.4    Ricciardi, L.5    Gallitelli, D.6
  • 8
    • 70249129739 scopus 로고    scopus 로고
    • Differential effects of mild and severe Cucumber mosaic virus strains in the perturbation of MicroRNA-regulated gene expression in tomato map to the 3′ sequence of RNA 2
    • Cillo F, Mascia T, Pasciuto MM, Gallitelli D. Differential effects of mild and severe Cucumber mosaic virus strains in the perturbation of MicroRNA-regulated gene expression in tomato map to the 3′ sequence of RNA 2. Mol. Plant-Microbe Interact. 2009, 22:1239-1249.
    • (2009) Mol. Plant-Microbe Interact. , vol.22 , pp. 1239-1249
    • Cillo, F.1    Mascia, T.2    Pasciuto, M.M.3    Gallitelli, D.4
  • 9
    • 0036207535 scopus 로고    scopus 로고
    • Changes in the activities of antioxidant enzymes in response to virus infection and hormone treatment
    • Clarke SF, Guy PL, Burritt DJ, Jameson PE. Changes in the activities of antioxidant enzymes in response to virus infection and hormone treatment. Physiol. Plant. 2002, 114:157-164.
    • (2002) Physiol. Plant. , vol.114 , pp. 157-164
    • Clarke, S.F.1    Guy, P.L.2    Burritt, D.J.3    Jameson, P.E.4
  • 10
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 2005, 139:5-17.
    • (2005) Plant Physiol. , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 11
    • 0030481542 scopus 로고    scopus 로고
    • Death don't have no mercy: cell death programs in plant-microbe interactions
    • Dangl JL, Dietrich RA, Richberg MH. Death don't have no mercy: cell death programs in plant-microbe interactions. Plant Cell 1996, 8:1793-1807.
    • (1996) Plant Cell , vol.8 , pp. 1793-1807
    • Dangl, J.L.1    Dietrich, R.A.2    Richberg, M.H.3
  • 14
    • 34547246983 scopus 로고    scopus 로고
    • Identification and characterization of Potato spindle tuber viroid infecting Solanum jasminoides and S. rantonnetii in Italy
    • Di Serio F. Identification and characterization of Potato spindle tuber viroid infecting Solanum jasminoides and S. rantonnetii in Italy. J. Plant Pathol. 2007, 89:297-300.
    • (2007) J. Plant Pathol. , vol.89 , pp. 297-300
    • Di Serio, F.1
  • 15
    • 58549086530 scopus 로고    scopus 로고
    • Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
    • Exposito-Rodriguez M, Borges A, Borges-Perez A, Perez J. Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. BMC Plant Biol. 2008, 8:131.
    • (2008) BMC Plant Biol. , vol.8 , pp. 131
    • Exposito-Rodriguez, M.1    Borges, A.2    Borges-Perez, A.3    Perez, J.4
  • 18
    • 0033826053 scopus 로고    scopus 로고
    • Role of reactive oxygen intermediates and cognate redox signaling in disease resistance
    • Grant JJ, Loake GJ. Role of reactive oxygen intermediates and cognate redox signaling in disease resistance. Plant Physiol. 2000, 124:21-29.
    • (2000) Plant Physiol. , vol.124 , pp. 21-29
    • Grant, J.J.1    Loake, G.J.2
  • 19
    • 67650930085 scopus 로고    scopus 로고
    • Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references
    • Guenin S, Mauriat M, Pelloux J, Van Wuytswinkel O, Bellini C, Gutierrez L. Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. J. Exp. Bot. 2009, 60:487-493.
    • (2009) J. Exp. Bot. , vol.60 , pp. 487-493
    • Guenin, S.1    Mauriat, M.2    Pelloux, J.3    Van Wuytswinkel, O.4    Bellini, C.5    Gutierrez, L.6
  • 20
    • 0001864081 scopus 로고
    • The water culture method for growing plants without soil
    • Vol. 347, Berkeley, CA, University of California
    • Hoagland DR, Arnon DI. The water culture method for growing plants without soil. California Agricultural Experimental Station Circular 1950, 1-32. Vol. 347, Berkeley, CA, University of California
    • (1950) California Agricultural Experimental Station Circular , pp. 1-32
    • Hoagland, D.R.1    Arnon, D.I.2
  • 21
    • 0003786083 scopus 로고    scopus 로고
    • 4th, edn., San Diego, CA, Academic Press
    • Hull R. Matthews' Plant Virology 2001, 4th, edn., San Diego, CA, Academic Press
    • (2001) Matthews' Plant Virology
    • Hull, R.1
  • 22
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • Jain M, Nijhawan A, Tyagi AK, Khurana JP. Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem. Biophys. Res. Commun. 2006, 345:646-651.
    • (2006) Biochem. Biophys. Res. Commun. , vol.345 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4
  • 25
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • Lovdal T, Lillo C. Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Anal. Biochem. 2009, 387:238-242.
    • (2009) Anal. Biochem. , vol.387 , pp. 238-242
    • Lovdal, T.1    Lillo, C.2
  • 26
    • 33644655397 scopus 로고    scopus 로고
    • Cauliflower mosaic virus, a compatible pathogen of Arabidopsis, engages three distinct defense-signaling pathways and activates rapid systemic generation of reactive oxygen species
    • Love AJ, Yun BW, Laval V, Loake GJ, Milner JJ. Cauliflower mosaic virus, a compatible pathogen of Arabidopsis, engages three distinct defense-signaling pathways and activates rapid systemic generation of reactive oxygen species. Plant Physiol. 2005, 139:935-948.
    • (2005) Plant Physiol. , vol.139 , pp. 935-948
    • Love, A.J.1    Yun, B.W.2    Laval, V.3    Loake, G.J.4    Milner, J.J.5
  • 27
    • 77957319780 scopus 로고    scopus 로고
    • Biological and molecular characterization of a recombinant isolate of Potato virus Y associated with a tomato necrotic disease occurring in Italy
    • Mascia T, Finetti Sialer MM, Cillo F, Gallitelli D. Biological and molecular characterization of a recombinant isolate of Potato virus Y associated with a tomato necrotic disease occurring in Italy. J. Plant Pathol. 2010, 92:131-138.
    • (2010) J. Plant Pathol. , vol.92 , pp. 131-138
    • Mascia, T.1    Finetti Sialer, M.M.2    Cillo, F.3    Gallitelli, D.4
  • 28
    • 55749108105 scopus 로고    scopus 로고
    • Caracterização de uma nova estirpe do Tomato mosaic virus isolada de tomateiro no Estado de São Paulo
    • Moreira SR, Eiras M, Chaves ALR, Galleti SR, Colariccio A. Caracterização de uma nova estirpe do Tomato mosaic virus isolada de tomateiro no Estado de São Paulo. Fitopatol. Bras. 2003, 28:602-607.
    • (2003) Fitopatol. Bras. , vol.28 , pp. 602-607
    • Moreira, S.R.1    Eiras, M.2    Chaves, A.L.R.3    Galleti, S.R.4    Colariccio, A.5
  • 29
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • Nicot N, Hausman JF, Hoffmann L, Evers D. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 2005, 56:2907-2914.
    • (2005) J. Exp. Bot. , vol.56 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.F.2    Hoffmann, L.3    Evers, D.4
  • 30
    • 0024095575 scopus 로고
    • Characterization of cucumber mosaic virus. I. Molecular heterogeneity mapping of RNA 3 in eight CMV strains
    • Owen J, Palukaitis P. Characterization of cucumber mosaic virus. I. Molecular heterogeneity mapping of RNA 3 in eight CMV strains. Virology 1988, 166:495-502.
    • (1988) Virology , vol.166 , pp. 495-502
    • Owen, J.1    Palukaitis, P.2
  • 31
    • 85077257460 scopus 로고    scopus 로고
    • Relative quantification
    • Dorak T. ed.), New York, International University Line
    • Pfaffl MW. Relative quantification. Real-Time PCR 2006, 63-82. Dorak T. ed.), New York, International University Line
    • (2006) Real-Time PCR , pp. 63-82
    • Pfaffl, M.W.1
  • 32
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-excel-based tool using pair-wise correlations
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-excel-based tool using pair-wise correlations. Biotechnol. Lett. 2004, 26:509-515.
    • (2004) Biotechnol. Lett. , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 33
    • 15544374615 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections
    • Radonic A, Thulke S, Bae HG, Muller MA, Siegert W, Nitsche A. Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections. Virol. J. 2005, 2:7.
    • (2005) Virol. J. , vol.2 , pp. 7
    • Radonic, A.1    Thulke, S.2    Bae, H.G.3    Muller, M.A.4    Siegert, W.5    Nitsche, A.6
  • 35
    • 0034807289 scopus 로고    scopus 로고
    • Control genes in quantitative molecular biological techniques: the variability of invariance
    • Sturzenbaum SR, Kille P. Control genes in quantitative molecular biological techniques: the variability of invariance. Comp. Biochem. Physiol. B, Biochem. Mol. Biol. 2001, 130:281-289.
    • (2001) Comp. Biochem. Physiol. B, Biochem. Mol. Biol. , vol.130 , pp. 281-289
    • Sturzenbaum, S.R.1    Kille, P.2
  • 37
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3:RESEARCH0034.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 38
    • 38749089407 scopus 로고    scopus 로고
    • Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses
    • Watson S, Mercier S, Bye C, Wilkinson J, Cunningham AL, Harman AN. Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses. Virol. J. 2007, 4:130.
    • (2007) Virol. J. , vol.4 , pp. 130
    • Watson, S.1    Mercier, S.2    Bye, C.3    Wilkinson, J.4    Cunningham, A.L.5    Harman, A.N.6
  • 39
    • 0037261908 scopus 로고    scopus 로고
    • Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants
    • Whitham SA, Quan S, Chang HS, Cooper B, Estes B, Zhu T, Wang X, Hou YM. Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. Plant J. 2003, 33:271-283.
    • (2003) Plant J. , vol.33 , pp. 271-283
    • Whitham, S.A.1    Quan, S.2    Chang, H.S.3    Cooper, B.4    Estes, B.5    Zhu, T.6    Wang, X.7    Hou, Y.M.8
  • 41
    • 33745944196 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses
    • Yamaguchi-Shinozaki K, Shinozaki K. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol. 2006, 57:781-803.
    • (2006) Annu. Rev. Plant Biol. , vol.57 , pp. 781-803
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.