Detection of Tomato black ring virus by real-time one-step RT-PCR

Journal of Virological Methods

Volumn 171, Issue 1, 2011, Pages 190-194

  Harper, Scott J ^a   Delmiglio, Catia ^a   Ward, Lisa I ^a   Clover, Gerard R G ^a  

^a Ministry for Primary Industries   (New Zealand)

Author keywords

Detection; ELISA; Real time; RT PCR; TBRV

Indexed keywords

VIRUS RNA;

ARTICLE; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; GENE AMPLIFICATION; INTERMETHOD COMPARISON; NEPOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROCESS DEVELOPMENT; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TOMATO BLACK RING VIRUS; VIRUS DETECTION; VIRUS GENOME;

DNA PRIMERS; NEPOVIRUS; OLIGONUCLEOTIDE PROBES; PLANT DISEASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; VIROLOGY;

NEPOVIRUS; TOMATO BLACK RING VIRUS;

EID: 78650542621     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.10.023     Document Type: Article

References (29)

1. Agindotan B.O., Shiel P.J., Berger P.H. Simultaneous detection of potato viruses, PLRV, PVA PVX and PVY from dormant potato tubers by TaqMan real-time RT-PCR. J. Virol. Methods 2007, 142:1-9.
2. Alten W.R., Ebsary B.A. Transmission of raspberry ringspot, tomato black ring, and peach rosette mosaic viruses by an Ontario population of Longidorus elongatus. Can. J. Plant Pathol. 1988, 10:1-5.
3. Bertolini E., Garcia J., Yuste A., Olmos A. High prevalence of viruses in table grape from Spain detected by real-time RT-PCR. Eur J. Plant Pathol. 2010, 128:283-287.
4. Brown D.F., Murant A.F., Trudgill D.L. Differences between isolates of the English serotype of Tomato black ring virus in their transmissibility by an English population of Longidorus attenuatus (Nematoda: Dorylaimoidea). Rev. Nematol. 1989, 12:51-56.
5. Brunt A.A., Crabtree K., Dallwitz M.J., Gibbs A.J., Watson L. Viruses of Plants 1996, CAB International, Wallingford, UK.
6. Digiaro M., Elbeaino T., Martelli G.P. Development of degenerate and species-specific primers for the differential and simultaneous RT-PCR detection of grapevine-infecting nepoviruses of subgroups A, B and C. J. Virol. Methods 2007, 141:34-40.
7. Dodd S.M., Robinson D.J. Nucleotide sequence homologies among RNA species of strains of Tomato black ring virus and other nepoviruses. J. Gen. Virol. 1984, 65:1731-1740.
8. Finetti-Sialer M.M., Ciancio A. Isolate-specific detection of Grapevine fanleaf virus from Xiphinema index through DNA-based molecular probes. Phytopathology 2005, 95:262-268.
9. Gallitelli D., Rana G.L., Volvas C., Martelli G.P. Viruses of artichoke: an overview. J. Plant Pathol. 2004, 86:267-281.
10. Gutierrez-Aguirre I., Mehle N., Delic D., Gruden K., Mumford R., Ravnikar M. Real-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus. J. Virol. Methods 2009, 162:46-55.
11. Harrison B.D. Studies of the host range, properties and mode of transmission of Beet ringspot virus. Ann. Appl. Biol. 1957, 45:462-472.
12. Harrison B.D. Relationship between Beet ringspot, Potato bouquet and Tomato black ring viruses. J. Gen. Microbiol. 1958, 18:450-460.
13. Harrison B.D., Mowat P., Taylor C.E. Transmission of a strain of Tomato black ring virus by Longidorus elongatus (Nematoda). Virology 1961, 14:480-485.
14. Heathcote G.D. Nematode-transmitted viruses of sugar beet in England, 1965-1973. Plant Pathol. 1973, 22:156-160.
15. Jończyk M., Le Gall O., Pałucha A., Borodynko N., Pospieszny H. Cloning and sequencing of full-length cDNAs of RNA1 and RNA2 of a Tomato black ring virus isolate from Poland. Arch. Virol. 2004, 149:799-807.
16. Kogovsek P., Gow L., Pompe-Novak M., Gruden K., Foster G.D., Boonham N., Ravnikar M. Single-step RT real-time PCR for sensitive detection and discrimination of Potato virus Y isolates. J. Virol. Methods 2008, 149:1-11.
17. Le Gall O., Lanneau M., Candresse T., Dunez J. The nucleotide sequence of the RNA-2 of an isolate of the English serotype of Tomato black ring virus: RNA recombination in the history of nepoviruses. J. Gen. Virol. 1995, 76:1279-1283.
18. Lister R.M., Murant A.F. Seed transmission of nematode-borne viruses. Ann. Appl. Biol. 1967, 59:49-62.
19. Martin R.R., Tzanetakis I.E. Characterization and recent advances in detection of strawberry viruses. Plant Dis. 2006, 90:384-396.
20. Meyer M., Hemmer O., Mayo M.A., Fritsch C. The nucleotide sequence of Tomato black ring virus RNA-2. J. Gen. Virol. 1986, 67:1257-1271.
21. Osman F., Leutnegger C., Golino D., Rowhani A. Comparison of low-density arrays RT-PCR and real-time TaqMan RT-PCR in detection of grapevine viruses. J. Virol. Methods 2008, 149:292-299.
22. Osman F., Rowhani A. Application of a spotting sample preparation technique for the detection of pathogens in woody plants by RT-PCR and real-time PCR (TaqMan). J. Virol. Methods 2006, 133:130-136.
23. Pospieszny H., Borodynko N., Jonczyk M. First report of Tomato black ring virus (TBRV) in the natural infection of Sambucus nigra in Poland. J. Plant Protect. Res. 2004, 44:373-376.
24. Ramakers C., Ruijter J.M., Lekanne Deprez R.H., Moorman A.M.F. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci. Lett. 2003, 339:62-66.
25. Rowhani A., Uyemoto J.K., Golino D.A., Martelli G.P. Pathogen testing and certification of Vitis and Prunus species. Annu. Rev. Phytopathol. 2005, 43:261-278.
26. Ruiz-Ruiz S., Moreno P., Guerri J., Ambros S. A real-time RT-PCR assay for detection and absolute quantitation of Citrus tristeza virus in different plant tissues. J. Virol. Methods 2007, 145:96-105.
27. Stewart E.L., Qu X., Overton B.E., Gildow F.E., Wenner N.G., Grove D.S. Development of a real-time RT-PCR SYBR green assay for Tomato ring spot virus in grape. Plant Dis. 2007, 91:1083-1088.
28. Wei T., Clover G. Use of primers with 5' non-complementary sequences in RT-PCR for the detection of nepovirus subgroups A and B. J. Virol. Methods 2008, 153:16-21.
29. Yang W., Yun Z., Chen Z., Zhang G., Wu S. Detection of Tobacco ringspot virus by RT-real-time PCR. Acta Phytopathol. Sin. 2007, 34:157-160.