메뉴 건너뛰기




Volumn 197, Issue 12, 2018, Pages 1552-1564

Whole-Genome sequencing of pharmacogenetic drug response in racially diverse children with asthma

(53)  Mak, Angel C Y a   White, Marquitta J a   Eckalbar, Walter L a   Szpiech, Zachary A b   Oh, Sam S a   Pino Yanes, Maria b,c   Hu, Donglei a   Goddard, Paǵe a   Huntsman, Scott a   Galanter, Joshua a,ad   Chen Wu, Ann d,e   Himes, Blanca E f,v   Germer, Soren g   Vogel, Julia M g,af   Bunting, Karen L g   Eng, Celeste a   Salazar, Sandra a   Keys, Kevin L a   Liberto, Jennifer a   Nuckton, Thomas J a   more..


Author keywords

Albuterol; Asthma; Latinos; Minority; NFKB1

Indexed keywords

ADAMTS3 PROTEIN; BRONCHODILATING AGENT; CYCLOOXYGENASE 18; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; PLCB1 PROTEIN; PROTEIN; SALBUTAMOL; SLC39A8 PROTEIN; UNCLASSIFIED DRUG;

EID: 85049056102     PISSN: 1073449X     EISSN: 15354970     Source Type: Journal    
DOI: 10.1164/rccm.201712-2529OC     Document Type: Article
Times cited : (87)

References (57)
  • 1
    • 85049032567 scopus 로고    scopus 로고
    • accessed 2017 Sep12]. from World Health Organization Asthma
    • World Health Organization. Asthma. 2017 [accessed 2017 Sep 12]. Available from: http://www.who.int/mediacentre/factsheets/fs307/en/.
    • (2017)
  • 2
    • 84988727899 scopus 로고    scopus 로고
    • Pulmonary disease and age at immigration among Hispanics: Results from the Hispanic Community Health Study/Study of Latinos
    • Barr RG, Aviles-Santa L, Davis SM, Aldrich TK, Gonzalez F 2nd, Henderson AG, et al. Pulmonary disease and age at immigration among Hispanics: results from the Hispanic Community Health Study/Study of Latinos. Am J Respir Crit Care Med 2016; 193: 386-395.
    • (2016) Am J Respir Crit Care Med , vol.193 , pp. 386-395
    • Barr, R.G.1    Aviles-Santa, L.2    Davis, S.M.3    Aldrich, T.K.4    Gonzalez, F.5    Henderson, A.G.6
  • 3
    • 85049021261 scopus 로고    scopus 로고
    • Asthma prevalence
    • [accessed 2017 Sep12].
    • Akinbami L. Asthma prevalence, health care use and mortality: United States, 2003-05. 2015 [accessed 2017 Sep 12]. Available from: http://www.cdc.gov/nchs/data/hestat/asthma03-05/asthma03-05. htm.
    • (2003) Health Care Use and Mortality: United States , vol.2015
    • Akinbami, L.1
  • 7
    • 9144227391 scopus 로고    scopus 로고
    • Lower bronchodilator responsiveness in Puerto Rican than in Mexican subjects with asthma
    • Genetics of Asthma in Latino Americans (GALA) Study
    • Burchard EG, Avila PC, Nazario S, Casal J, Torres A, Rodriguez-Santana JR, et al.; Genetics of Asthma in Latino Americans (GALA) Study. Lower bronchodilator responsiveness in Puerto Rican than in Mexican subjects with asthma. Am J Respir Crit Care Med 2004; 169:386-392.
    • (2004) Am J Respir Crit Care Med , vol.169 , pp. 386-392
    • Burchard, E.G.1    Avila, P.C.2    Nazario, S.3    Casal, J.4    Torres, A.5    Rodriguez-Santana, J.R.6
  • 8
    • 35448932302 scopus 로고    scopus 로고
    • Ethnic-specific differences in bronchodilator responsiveness among African Americans, Puerto Ricans, and Mexicans with asthma
    • Naqvi M, Thyne S, Choudhry S, Tsai HJ, Navarro D, Castro RA, et al. Ethnic-specific differences in bronchodilator responsiveness among African Americans, Puerto Ricans, and Mexicans with asthma. J Asthma 2007; 44:639-648.
    • (2007) J Asthma , vol.44 , pp. 639-648
    • Naqvi, M.1    Thyne, S.2    Choudhry, S.3    Tsai, H.J.4    Navarro, D.5    Castro, R.A.6
  • 9
    • 82555196052 scopus 로고    scopus 로고
    • Impact of race on asthma treatment failures in the asthma clinical research network
    • NHLBI Asthma Clinical Research Network
    • Wechsler ME, Castro M, Lehman E, Chinchilli VM, Sutherland ER, Denlinger L, et al.; NHLBI Asthma Clinical Research Network. Impact of race on asthma treatment failures in the asthma clinical research network. Am J Respir Crit Care Med 2011; 184:1247-1253.
    • (2011) Am J Respir Crit Care Med , vol.184 , pp. 1247-1253
    • Wechsler, M.E.1    Castro, M.2    Lehman, E.3    Chinchilli, V.M.4    Sutherland, E.R.5    Denlinger, L.6
  • 10
    • 33144476873 scopus 로고    scopus 로고
    • The Salmeterol Multicenter Asthma Research Trial: A comparison of usual pharmacotherapy for asthma or usual pharmacotherapy plus salmeterol
    • SMART Study Group
    • Nelson HS, Weiss ST, Bleecker ER, Yancey SW, Dorinsky PM; SMART Study Group. The Salmeterol Multicenter Asthma Research Trial: A comparison of usual pharmacotherapy for asthma or usual pharmacotherapy plus salmeterol. Chest 2006; 129:15-26.
    • (2006) Chest , vol.129 , pp. 15-26
    • Nelson, H.S.1    Weiss, S.T.2    Bleecker, E.R.3    Yancey, S.W.4    Dorinsky, P.M.5
  • 12
    • 0025780769 scopus 로고
    • A population-based study of bronchial asthma in adult twin pairs
    • Nieminen MM, Kaprio J, Koskenvuo M. A population-based study of bronchial asthma in adult twin pairs. Chest 1991; 100:70-75.
    • (1991) Chest , vol.100 , pp. 70-75
    • Nieminen, M.M.1    Kaprio, J.2    Koskenvuo, M.3
  • 14
    • 84864587259 scopus 로고    scopus 로고
    • Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene
    • Himes BE, Jiang X, Hu R, Wu AC, Lasky-Su JA, Klanderman BJ, et al. Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene. PLoS Genet 2012; 8:e1002824.
    • (2012) PLoS Genet , vol.8 , pp. e1002824
    • Himes, B.E.1    Jiang, X.2    Hu, R.3    Wu, A.C.4    Lasky-Su, J.A.5    Klanderman, B.J.6
  • 16
    • 84923887211 scopus 로고    scopus 로고
    • Genome-wide association study of short-Acting b2-Agonists. A novel genome-wide significant locus on chromosome 2 near ASB3
    • SHARP Investigators
    • Israel E, Lasky-Su J, Markezich A, Damask A, Szefler SJ, Schuemann B, et al.; SHARP Investigators. Genome-wide association study of short-Acting b2-Agonists. A novel genome-wide significant locus on chromosome 2 near ASB3. Am J Respir Crit Care Med 2015; 191: 530-537.
    • (2015) Am J Respir Crit Care Med , vol.191 , pp. 530-537
    • Israel, E.1    Lasky-Su, J.2    Markezich, A.3    Damask, A.4    Szefler, S.J.5    Schuemann, B.6
  • 17
    • 84905036813 scopus 로고    scopus 로고
    • Gene-based association identifies SPATA13-AS1 as a pharmacogenomic predictor of inhaled short-Acting beta-Agonist response in multiple population groups
    • Padhukasahasram B, Yang JJ, Levin AM, Yang M, Burchard EG, Kumar R, et al. Gene-based association identifies SPATA13-AS1 as a pharmacogenomic predictor of inhaled short-Acting beta-Agonist response in multiple population groups. Pharmacogenomics J 2014; 14:365-371.
    • (2014) Pharmacogenomics J , vol.14 , pp. 365-371
    • Padhukasahasram, B.1    Yang, J.J.2    Levin, A.M.3    Yang, M.4    Burchard, E.G.5    Kumar, R.6
  • 19
    • 85049009159 scopus 로고    scopus 로고
    • Whole genome sequencing to identify genetic variation associated with bronchodilator response in minority children with asthma [abstract]
    • Mak AC, White MJ, Eng C, Hu D, Huntsman S, Oh SS, et al. Whole genome sequencing to identify genetic variation associated with bronchodilator response in minority children with asthma [abstract]. Am J Respir Crit Care Med 2016; 193:A3709.
    • (2016) Am J Respir Crit Care Med , vol.193 , pp. A3709
    • Mak, A.C.1    White, M.J.2    Eng, C.3    Hu, D.4    Huntsman, S.5    Oh, S.S.6
  • 20
    • 85049000093 scopus 로고    scopus 로고
    • Whole genome sequencing of pharmacogenetic drug response in ethnically diverse children with asthma Presented at the American Society of Human Genetics Annual Meeting
    • Vancouver Canada. Abstract 1660W
    • Mak AC, White MJ, Szpiech ZA, Pino-Yanes M, Oh SS, Hu D, et al. Whole genome sequencing of pharmacogenetic drug response in ethnically diverse children with asthma. Presented at the American Society of Human Genetics Annual Meeting. Oct 18-22, 2016, Vancouver, Canada. Abstract 1660W.
    • (2016) Oct , pp. 18-22
    • Mak, A.C.1    White, M.J.2    Szpiech, Z.A.3    Pino-Yanes, M.4    Oh, S.S.5    Hu, D.6
  • 21
    • 85049044564 scopus 로고    scopus 로고
    • Whole genome sequencing of pharmacogenetic drug response in racially and ethnically diverse children with asthma
    • Oct 17-21 FL. Abstract 1941F Orlando
    • Mak AC, White MJ, Szpiech ZA, Eckalbar W, Oh SS, Pino-Yanes M, et al. Whole genome sequencing of pharmacogenetic drug response in racially and ethnically diverse children with asthma. Presented at the American Society of Human Genetics Annual Meeting. Oct 17-21, 2017, Orlando, FL. Abstract 1941F.
    • (2017) American Society of Human Genetics Annual Meeting
    • Mak, A.C.1    White, M.J.2    Szpiech, Z.A.3    Eckalbar, W.4    Oh, S.S.5    Pino-Yanes, M.6
  • 22
    • 85049047075 scopus 로고    scopus 로고
    • Whole genome sequencing study on bronchodilator drug response in ethnically diverse children with asthma [abstract]
    • Mak AC, White MJ, Szpiech ZA, Eckalbar W, Pino-Yanes M, Oh SS, et al. Whole genome sequencing study on bronchodilator drug response in ethnically diverse children with asthma [abstract]. Am J Respir Crit Care Med 2017; 195:A4969.
    • (2017) Am J Respir Crit Care Med , vol.195 , pp. A4969
    • Mak, A.C.1    White, M.J.2    Szpiech, Z.A.3    Eckalbar, W.4    Pino-Yanes, M.5    Oh, S.S.6
  • 24
    • 79955860273 scopus 로고    scopus 로고
    • Random-effects model aimed at discovering associations in meta-Analysis of genome-wide association studies
    • Han B, Eskin E. Random-effects model aimed at discovering associations in meta-Analysis of genome-wide association studies. Am J Hum Genet 2011; 88:586-598.
    • (2011) Am J Hum Genet , vol.88 , pp. 586-598
    • Han, B.1    Eskin, E.2
  • 25
    • 85110335650 scopus 로고
    • Quantitative methods for analysing travel behavior of individuals: Some recent developments. in
    • Hensher DA, Stopher PR, editors
    • McFadden D. Quantitative methods for analysing travel behavior of individuals: some recent developments. In: Hensher DA, Stopher PR, editors. Behavioural travel modelling. London: Croom Helm; 1979. pp. 279-318.
    • (1979) Behavioural Travel Modelling. London Croom Helm , pp. 279-318
    • McFadden, D.1
  • 26
    • 84903357135 scopus 로고    scopus 로고
    • Diverse convergent evidence in the genetic analysis of complex disease: Coordinating omic, informatic, and experimental evidence to better identify and validate risk factors
    • Ciesielski TH, Pendergrass SA, White MJ, Kodaman N, Sobota RS, Huang M, et al. Diverse convergent evidence in the genetic analysis of complex disease: coordinating omic, informatic, and experimental evidence to better identify and validate risk factors. BioData Min 2014; 7:10.
    • (2014) BioData Min , vol.7 , pp. 10
    • Ciesielski, T.H.1    Pendergrass, S.A.2    White, M.J.3    Kodaman, N.4    Sobota, R.S.5    Huang, M.6
  • 27
    • 0032926069 scopus 로고    scopus 로고
    • Spirometric reference values from a sample of the general U.S. Population
    • Hankinson JL, Odencrantz JR, Fedan KB. Spirometric reference values from a sample of the general U.S. population. Am J Respir Crit Care Med 1999; 159:179-187.
    • (1999) Am J Respir Crit Care Med , vol.159 , pp. 179-187
    • Hankinson, J.L.1    Odencrantz, J.R.2    Fedan, K.B.3
  • 28
    • 84923225139 scopus 로고    scopus 로고
    • Addressing population-specific multiple testing burdens in genetic association studies
    • Sobota RS, Shriner D, Kodaman N, Goodloe R, Zheng W, Gao YT, et al. Addressing population-specific multiple testing burdens in genetic association studies. Ann Hum Genet 2015; 79:136-147.
    • (2015) Ann Hum Genet , vol.79 , pp. 136-147
    • Sobota, R.S.1    Shriner, D.2    Kodaman, N.3    Goodloe, R.4    Zheng, W.5    Gao, Y.T.6
  • 29
    • 43249125992 scopus 로고    scopus 로고
    • Estimation of the multiple testing burden for genomewide association studies of nearly all common variants
    • Peer I, Yelensky R, Altshuler D, Daly MJ. Estimation of the multiple testing burden for genomewide association studies of nearly all common variants. Genet Epidemiol 2008; 32:381-385.
    • (2008) Genet Epidemiol , vol.32 , pp. 381-385
    • Peer, I.1    Yelensky, R.2    Altshuler, D.3    Daly, M.J.4
  • 30
    • 58249124501 scopus 로고    scopus 로고
    • Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies
    • Duggal P, Gillanders EM, Holmes TN, Bailey-Wilson JE. Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies. BMC Genomics 2008; 9:516.
    • (2008) BMC Genomics , vol.9 , pp. 516
    • Duggal, P.1    Gillanders, E.M.2    Holmes, T.N.3    Bailey-Wilson, J.E.4
  • 31
    • 76549131505 scopus 로고    scopus 로고
    • Positionally cloned genes and age-specific effects in asthma and atopy: An international population-based cohort study (ECRHS
    • Castro-Giner F, de Cid R, Gonzalez JR, Jarvis D, Heinrich J, Janson C, et al. Positionally cloned genes and age-specific effects in asthma and atopy: An international population-based cohort study (ECRHS). Thorax 2010; 65:124-131.
    • (2010) Thorax , vol.65 , pp. 124-131
    • Castro-Giner, F.1    De Cid, R.2    Gonzalez, J.R.3    Jarvis, D.4    Heinrich, J.5    Janson, C.6
  • 33
  • 35
    • 82355169007 scopus 로고    scopus 로고
    • Using extreme phenotype sampling to identify the rare causal variants of quantitative traits in association studies
    • Li D, Lewinger JP, Gauderman WJ, Murcray CE, Conti D. Using extreme phenotype sampling to identify the rare causal variants of quantitative traits in association studies. Genet Epidemiol 2011; 35: 790-799.
    • (2011) Genet Epidemiol , vol.35 , pp. 790-799
    • Li, D.1    Lewinger, J.P.2    Gauderman, W.J.3    Murcray, C.E.4    Conti, D.5
  • 36
    • 79959557454 scopus 로고    scopus 로고
    • Power in the phenotypic extremes: A simulation study of power in discovery and replication of rare variants
    • Guey LT, Kravic J, Melander O, Burtt NP, Laramie JM, Lyssenko V, et al. Power in the phenotypic extremes: A simulation study of power in discovery and replication of rare variants. Genet Epidemiol 2011; 35:236-246.
    • (2011) Genet Epidemiol , vol.35 , pp. 236-246
    • Guey, L.T.1    Kravic, J.2    Melander, O.3    Burtt, N.P.4    Laramie, J.M.5    Lyssenko, V.6
  • 37
    • 84864953892 scopus 로고    scopus 로고
    • Optimal tests for rare variant effects in sequencing association studies
    • Lee S, Wu MC, Lin X. Optimal tests for rare variant effects in sequencing association studies. Biostatistics 2012; 13:762-775.
    • (2012) Biostatistics , vol.13 , pp. 762-775
    • Lee, S.1    Wu, M.C.2    Lin, X.3
  • 38
    • 84908157737 scopus 로고    scopus 로고
    • DNAH5 is associated with total lung capacity in chronic obstructive pulmonary disease
    • COPDGene and ECLIPSE Investigators
    • Lee JH, McDonald ML, Cho MH, Wan ES, Castaldi PJ, Hunninghake GM, et al., COPDGene and ECLIPSE Investigators. DNAH5 is associated with total lung capacity in chronic obstructive pulmonary disease. Respir Res 2014; 15:97.
    • (2014) Respir Res , vol.15 , pp. 97
    • Lee, J.H.1    McDonald, M.L.2    Cho, M.H.3    Wan, E.S.4    Castaldi, P.J.5    Hunninghake, G.M.6
  • 40
    • 80055099134 scopus 로고    scopus 로고
    • A genome-wide meta-Analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order
    • Ramasamy A, Curjuric I, Coin LJ, Kumar A, McArdle WL, Imboden M, et al. A genome-wide meta-Analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order. J Allergy Clin Immunol 2011; 128:996-1005.
    • (2011) J Allergy Clin Immunol , vol.128 , pp. 996-1005
    • Ramasamy, A.1    Curjuric, I.2    Coin, L.J.3    Kumar, A.4    McArdle, W.L.5    Imboden, M.6
  • 41
    • 34250853449 scopus 로고    scopus 로고
    • Association between IgE levels and asthma severity among African American, Mexican, and Puerto Rican patients with asthma
    • Naqvi M, Choudhry S, Tsai HJ, Thyne S, Navarro D, Nazario S, et al. Association between IgE levels and asthma severity among African American, Mexican, and Puerto Rican patients with asthma. J Allergy Clin Immunol 2007; 120:137-143.
    • (2007) J Allergy Clin Immunol , vol.120 , pp. 137-143
    • Naqvi, M.1    Choudhry, S.2    Tsai, H.J.3    Thyne, S.4    Navarro, D.5    Nazario, S.6
  • 43
    • 33846904740 scopus 로고    scopus 로고
    • IL-13 and epidermal growth factor receptor have critical but distinct roles in epithelial cell mucin production
    • Zhen G, Park SW, Nguyenvu LT, Rodriguez MW, Barbeau R, Paquet AC, et al. IL-13 and epidermal growth factor receptor have critical but distinct roles in epithelial cell mucin production. Am J Respir Cell Mol Biol 2007; 36:244-253.
    • (2007) Am J Respir Cell Mol Biol , vol.36 , pp. 244-253
    • Zhen, G.1    Park, S.W.2    Nguyenvu, L.T.3    Rodriguez, M.W.4    Barbeau, R.5    Paquet, A.C.6
  • 44
    • 48949119323 scopus 로고    scopus 로고
    • The human zinc transporter SLC39A8 (Zip8) is critical in zinc-mediated cytoprotection in lung epithelia
    • Besecker B, Bao S, Bohacova B, Papp A, Sadee W, Knoell DL. The human zinc transporter SLC39A8 (Zip8) is critical in zinc-mediated cytoprotection in lung epithelia. Am J Physiol Lung Cell Mol Physiol 2008; 294:L1127-L1136.
    • (2008) Am J Physiol Lung Cell Mol Physiol , vol.294 , pp. L1127-L1136
    • Besecker, B.1    Bao, S.2    Bohacova, B.3    Papp, A.4    Sadee, W.5    Knoell, D.L.6
  • 45
  • 46
    • 84943302630 scopus 로고    scopus 로고
    • Genetic variants in PLCB4/PLCB1 as susceptibility loci for coronary artery aneurysm formation in Kawasaki disease in Han Chinese in Taiwan
    • Lin YJ, Chang JS, Liu X, Tsang H, Chien WK, Chen JH, et al. Genetic variants in PLCB4/PLCB1 as susceptibility loci for coronary artery aneurysm formation in Kawasaki disease in Han Chinese in Taiwan. Sci Rep 2015; 5:14762.
    • (2015) Sci Rep , vol.5 , pp. 14762
    • Lin, Y.J.1    Chang, J.S.2    Liu, X.3    Tsang, H.4    Chien, W.K.5    Chen, J.H.6
  • 47
    • 84864435040 scopus 로고    scopus 로고
    • Mapping genetic variants associated with beta-Adrenergic responses in inbred mice
    • Hersch M, Peter B, Kang HM, Schü pfer F, Abriel H, Pedrazzini T, et al. Mapping genetic variants associated with beta-Adrenergic responses in inbred mice. PLoS One 2012; 7:e41032.
    • (2012) PLoS One , vol.7 , pp. e41032
    • Hersch, M.1    Peter, B.2    Kang, H.M.3    Schüpfer, F.4    Abriel, H.5    Pedrazzini, T.6
  • 49
    • 35649028488 scopus 로고    scopus 로고
    • Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids
    • Woodruff PG, Boushey HA, Dolganov GM, Barker CS, Yang YH, Donnelly S, et al. Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids. Proc Natl Acad Sci USA 2007; 104: 15858-15863.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 15858-15863
    • Woodruff, P.G.1    Boushey, H.A.2    Dolganov, G.M.3    Barker, C.S.4    Yang, Y.H.5    Donnelly, S.6
  • 52
    • 84876260798 scopus 로고    scopus 로고
    • Genetics: A gene of rare effect
    • Hall SS. Genetics: A gene of rare effect. Nature 2013; 496:152-155.
    • (2013) Nature , vol.496 , pp. 152-155
    • Hall, S.S.1
  • 53
  • 54
    • 84991669666 scopus 로고    scopus 로고
    • Genomics is failing on diversity
    • Popejoy AB, Fullerton SM. Genomics is failing on diversity. Nature 2016; 538:161-164.
    • (2016) Nature , vol.538 , pp. 161-164
    • Popejoy, A.B.1    Fullerton, S.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.