dropEst: Pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments

Genome Biology

Volumn 19, Issue 1, 2018, Pages

  Petukhov, Viktor ^a,b   Guo, Jimin ^b   Baryawno, Ninib ^c,d,e   Severe, Nicolas ^c,d,e   Scadden, David T ^c,d,e   Samsonova, Maria G ^a   Kharchenko, Peter V ^b,d  

^a PETER THE GREAT ST PETERSBURG POLYTECHNIC UNIVERSITY   (Russian Federation)

^b HARVARD MEDICAL SCHOOL   (United States)

^c MASSACHUSETTS GENERAL HOSPITAL CANCER CENTER   (United States)

^d HARVARD STEM CELL INSTITUTE   (United States)

^e Harvard University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL CELL; ARTICLE; BONE MARROW DERIVED MONONUCLEAR CELL; CELL SIZE; CELLULAR BARCODE; CELLULAR DISTRIBUTION; CELLULAR PARAMETERS; CONTROLLED STUDY; HUMAN; HUMAN CELL; MALE; MEASUREMENT ACCURACY; MICROFLUIDICS; MOLECULAR LIBRARY; MOUSE; NONHUMAN; PERIPHERAL BLOOD MONONUCLEAR CELL; POLYMERASE CHAIN REACTION; RNA SEQUENCE; SCORING SYSTEM; SINGLE CELL RNA SEQUENCE; ANIMAL; C57BL MOUSE; DNA BARCODING; GENE EXPRESSION PROFILING; GENETICS; HIGH THROUGHPUT SEQUENCING; K-562 CELL LINE; PROCEDURES; SEQUENCE ANALYSIS; SINGLE CELL ANALYSIS; SOFTWARE; TUMOR CELL LINE;

RNA; TRANSCRIPTOME;

ANIMALS; CELL LINE, TUMOR; DNA BARCODING, TAXONOMIC; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; K562 CELLS; MALE; MICE; MICE, INBRED C57BL; MICROFLUIDICS; RNA; SEQUENCE ANALYSIS, RNA; SINGLE-CELL ANALYSIS; SOFTWARE; TRANSCRIPTOME;

EID: 85048936988     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-018-1449-6     Document Type: Article

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