메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

Scalable microfluidics for single-cell RNA printing and sequencing

Author keywords

[No Author keywords available]

Indexed keywords

DIMETICONE; GLASS; RNA; BAYSILON;

EID: 84939162152     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-015-0684-3     Document Type: Article
Times cited : (102)

References (42)
  • 1
    • 2942530984 scopus 로고    scopus 로고
    • Single-cell antisense RNA amplification and microarray analysis as a tool for studying neurological degeneration and restoration
    • Kelz MB, Dent GW, Therianos S, Marciano PG, McIntosh TK, Coleman PD, et al. Single-cell antisense RNA amplification and microarray analysis as a tool for studying neurological degeneration and restoration. Sci Aging Knowl Environ. 2002;2002:re1.
    • (2002) Sci Aging Knowl Environ , vol.2002 , pp. re1
    • Kelz, M.B.1    Dent, G.W.2    Therianos, S.3    Marciano, P.G.4    McIntosh, T.K.5    Coleman, P.D.6
  • 4
  • 5
    • 53349161901 scopus 로고    scopus 로고
    • Imaging individual mRNA molecules using multiple singly labeled probes
    • Raj A, van den Bogaard P, Rifkin SA, van Oudenaarden A, Tyagi S. Imaging individual mRNA molecules using multiple singly labeled probes. Nat Methods. 2008;5:877-9.
    • (2008) Nat Methods. , vol.5 , pp. 877-879
    • Raj, A.1    Bogaard, P.2    Rifkin, S.A.3    Oudenaarden, A.4    Tyagi, S.5
  • 6
    • 84863202666 scopus 로고    scopus 로고
    • Single-cell systems biology by super-resolution imaging and combinatorial labeling
    • Lubeck E, Cai L. Single-cell systems biology by super-resolution imaging and combinatorial labeling. Nat Methods. 2012;9:743-8.
    • (2012) Nat Methods. , vol.9 , pp. 743-748
    • Lubeck, E.1    Cai, L.2
  • 7
    • 79959403670 scopus 로고    scopus 로고
    • Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
    • Islam S, Kjallquist U, Moliner A, Zajac P, Fan JB, Lonnerberg P, et al. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res. 2011;21:1160-7.
    • (2011) Genome Res. , vol.21 , pp. 1160-1167
    • Islam, S.1    Kjallquist, U.2    Moliner, A.3    Zajac, P.4    Fan, J.B.5    Lonnerberg, P.6
  • 8
    • 84864880991 scopus 로고    scopus 로고
    • Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
    • Ramskold D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, et al. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. Nat Biotechnol. 2012;30:777-82.
    • (2012) Nat Biotechnol. , vol.30 , pp. 777-782
    • Ramskold, D.1    Luo, S.2    Wang, Y.C.3    Li, R.4    Deng, Q.5    Faridani, O.R.6
  • 9
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification
    • Hashimshony T, Wagner F, Sher N, Yanai I. CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. Cell Rep. 2012;2:666-73.
    • (2012) Cell Rep. , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 12
    • 84893905629 scopus 로고    scopus 로고
    • Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
    • Jaitin DA, Kenigsberg E, Keren-Shaul H, Elefant N, Paul F, Zaretsky I, et al. Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science. 2014;343:776-9.
    • (2014) Science. , vol.343 , pp. 776-779
    • Jaitin, D.A.1    Kenigsberg, E.2    Keren-Shaul, H.3    Elefant, N.4    Paul, F.5    Zaretsky, I.6
  • 13
    • 84895069488 scopus 로고    scopus 로고
    • Quantitative single-cell RNA-seq with unique molecular identifiers
    • Islam S, Zeisel A, Joost S, La Manno G, Zajac P, Kasper M, et al. Quantitative single-cell RNA-seq with unique molecular identifiers. Nat Methods. 2014;11:163-6.
    • (2014) Nat Methods. , vol.11 , pp. 163-166
    • Islam, S.1    Zeisel, A.2    Joost, S.3    Manno, G.4    Zajac, P.5    Kasper, M.6
  • 14
    • 84903185013 scopus 로고    scopus 로고
    • Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
    • Shalek AK, Satija R, Shuga J, Trombetta JJ, Gennert D, Lu D, et al. Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. Nature. 2014;510:363-9.
    • (2014) Nature. , vol.510 , pp. 363-369
    • Shalek, A.K.1    Satija, R.2    Shuga, J.3    Trombetta, J.J.4    Gennert, D.5    Lu, D.6
  • 15
    • 84922321862 scopus 로고    scopus 로고
    • Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
    • Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat Biotechnol. 2014;32:1053-8.
    • (2014) Nat Biotechnol. , vol.32 , pp. 1053-1058
    • Pollen, A.A.1    Nowakowski, T.J.2    Shuga, J.3    Wang, X.4    Leyrat, A.A.5    Lui, J.H.6
  • 16
    • 32444435330 scopus 로고    scopus 로고
    • Parallel picoliter rt-PCR assays using microfluidics
    • Marcus JS, Anderson WF, Quake SR. Parallel picoliter rt-PCR assays using microfluidics. Anal Chem. 2006;78:956-8.
    • (2006) Anal Chem. , vol.78 , pp. 956-958
    • Marcus, J.S.1    Anderson, W.F.2    Quake, S.R.3
  • 19
    • 84882585786 scopus 로고    scopus 로고
    • Ultrahigh-throughput Mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops
    • Eastburn DJ, Sciambi A, Abate AR. Ultrahigh-throughput Mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops. Anal Chem. 2013;85:8016-21.
    • (2013) Anal Chem. , vol.85 , pp. 8016-8021
    • Eastburn, D.J.1    Sciambi, A.2    Abate, A.R.3
  • 22
    • 84861173939 scopus 로고    scopus 로고
    • Digital polymerase chain reaction in an array of femtoliter polydimethylsiloxane microreactors
    • Men Y, Fu Y, Chen Z, Sims PA, Greenleaf WJ, Huang Y. Digital polymerase chain reaction in an array of femtoliter polydimethylsiloxane microreactors. Anal Chem. 2012;84:4262-6.
    • (2012) Anal Chem. , vol.84 , pp. 4262-4266
    • Men, Y.1    Fu, Y.2    Chen, Z.3    Sims, P.A.4    Greenleaf, W.J.5    Huang, Y.6
  • 23
    • 0035984039 scopus 로고    scopus 로고
    • Poly(dimethylsiloxane) as a material for fabricating microfluidic devices
    • McDonald JC, Whitesides GM. Poly(dimethylsiloxane) as a material for fabricating microfluidic devices. Acc Chem Res. 2002;35:491-9.
    • (2002) Acc Chem Res. , vol.35 , pp. 491-499
    • McDonald, J.C.1    Whitesides, G.M.2
  • 25
    • 84862207271 scopus 로고    scopus 로고
    • Oil-sealed femtoliter fiber-optic arrays for single molecule analysis
    • Zhang H, Nie S, Etson CM, Wang RM, Walt DR. Oil-sealed femtoliter fiber-optic arrays for single molecule analysis. Lab Chip. 2012;12:2229-39.
    • (2012) Lab Chip. , vol.12 , pp. 2229-2239
    • Zhang, H.1    Nie, S.2    Etson, C.M.3    Wang, R.M.4    Walt, D.R.5
  • 26
    • 77956116622 scopus 로고    scopus 로고
    • Massively parallel detection of gene expression in single cells using subnanolitre wells
    • Gong Y, Ogunniyi AO, Love JC. Massively parallel detection of gene expression in single cells using subnanolitre wells. Lab Chip. 2010;10:2334-7.
    • (2010) Lab Chip. , vol.10 , pp. 2334-2337
    • Gong, Y.1    Ogunniyi, A.O.2    Love, J.C.3
  • 27
    • 84939211150 scopus 로고    scopus 로고
    • Combinatorial labeling of single cells for gene expression cytometry
    • Fan HC, Fu GK, Fodor SPA. Combinatorial labeling of single cells for gene expression cytometry. Science. 2015;347:628-36.
    • (2015) Science. , vol.347 , pp. 628-636
    • Fan, H.C.1    Fu, G.K.2    Fodor, S.P.A.3
  • 29
    • 33745072443 scopus 로고    scopus 로고
    • A microengraving method for rapid selection of single cells producing antigen-specific antibodies
    • Love JC, Ronan JL, Grotenbreg GM, van der Veen AG, Ploegh HL. A microengraving method for rapid selection of single cells producing antigen-specific antibodies. Nat Biotechnol. 2006;24:703-7.
    • (2006) Nat Biotechnol. , vol.24 , pp. 703-707
    • Love, J.C.1    Ronan, J.L.2    Grotenbreg, G.M.3    Veen, A.G.4    Ploegh, H.L.5
  • 31
    • 84856398949 scopus 로고    scopus 로고
    • Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes
    • Shiroguchi K, Jia TZ, Sims PA, Xie XS. Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes. Proc Natl Acad Sci. 2012;109:1347-52.
    • (2012) Proc Natl Acad Sci. , vol.109 , pp. 1347-1352
    • Shiroguchi, K.1    Jia, T.Z.2    Sims, P.A.3    Xie, X.S.4
  • 34
    • 84884151405 scopus 로고    scopus 로고
    • Simultaneous profiling of 194 distinct receptor transcripts in human cells
    • Kang BH, Jensen KJ, Hatch JA, Janes KA. Simultaneous profiling of 194 distinct receptor transcripts in human cells. Sci Signal. 2013;6:rs13.
    • (2013) Sci Signal , vol.6 , pp. rs13
    • Kang, B.H.1    Jensen, K.J.2    Hatch, J.A.3    Janes, K.A.4
  • 35
    • 71149084382 scopus 로고    scopus 로고
    • Revealing global regulatory perturbations across human cancers
    • Goodarzi H, Elemento O, Tavazoie S. Revealing global regulatory perturbations across human cancers. Mol Cell. 2009;36:900-11.
    • (2009) Mol Cell. , vol.36 , pp. 900-911
    • Goodarzi, H.1    Elemento, O.2    Tavazoie, S.3
  • 36
    • 57249084011 scopus 로고    scopus 로고
    • Visualizing data using t-SNE
    • Van der Maaten L, Hinton G. Visualizing data using t-SNE. J Mach Learn Res. 2008;9:85.
    • (2008) J Mach Learn Res. , vol.9 , pp. 85
    • Maaten, L.1    Hinton, G.2
  • 37
    • 84880280631 scopus 로고    scopus 로고
    • viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
    • el Amir AD, Davis KL, Tadmor MD, Simonds EF, Levine JH, Bendall SC, et al. viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia. Nat Biotechnol. 2013;31:545-52.
    • (2013) Nat Biotechnol , vol.31 , pp. 545-552
    • Amir, A.D.1    Davis, K.L.2    Tadmor, M.D.3    Simonds, E.F.4    Levine, J.H.5    Bendall, S.C.6
  • 41
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq-a Python framework to work with high-throughput sequencing data
    • Anders S, Pyl PT, Huber W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics. 2015;31:166-9.
    • (2015) Bioinformatics. , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 42
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28:511-5.
    • (2010) Nat Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    Baren, M.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.