Electronic microarrays in DNA computing

Journal of Nanoscience and Nanotechnology

Volumn 11, Issue 6, 2011, Pages 4717-4723

  Akin, H E ^a   Karabay, D A O ^b   Kyle, J R ^a   Mills Jr , A P ^b   Ozkan, C S ^a   Ozkan, M ^a  

^a University of California Riverside   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Computing; DNA; Fluorescence; Hybridization; Massive Parallelism; Microarray; Permeation Layer

Indexed keywords

CALCULATIONS; DIGITAL STORAGE; DNA; FLUORESCENCE; MICROARRAYS; MICROELECTRONICS; MOLECULAR BIOLOGY;

ARITHMETIC OPERATIONS; COMPLEMENTARY SEQUENCES; COMPUTING; FLUORESCENT SIGNALS; HYBRIDIZATION; MASSIVE PARALLELISM; NICHE APPLICATIONS; PRACTICAL PROBLEMS;

DNA SEQUENCES;

DNA; FLUORESCENT DYE;

ARTICLE; CHEMISTRY; ELECTRODE; GENETICS; METABOLISM; METHODOLOGY; MICROARRAY ANALYSIS; MOLECULAR COMPUTER; NUCLEIC ACID HYBRIDIZATION;

COMPUTERS, MOLECULAR; DNA; ELECTRODES; FLUORESCENT DYES; MICROARRAY ANALYSIS; NUCLEIC ACID HYBRIDIZATION;

EID: 85047689035     PISSN: 15334880     EISSN: 15334899     Source Type: Journal    
DOI: 10.1166/jnn.2011.38844717     Document Type: Conference Paper

References (44)

1. L. M. Adleman, Science 266, 1021 (1994
2. R. Lipton, Science 268, 542 (1995
3. D. Faulhammer, A. R. Cukras, R. J. Lipton, and L. F. Landweber, Proc. Natl. Acad. Sci. 97, 1385 (2000
4. F. Guarnieri, M. Fliss, and C. Bancroft, Science 273, 220 (1996
5. Q. Ouyang, P. D. Kaplan, S. Liu, and A. Libchaber, Science 278, 446 (1997
6. E. B. Baum, Science 268, 583 (1995
7. K. Sakamoto, H. Gouzu, K. Komiya, D. Kiga, S. Yokoyama, T. Yokomori, and M. Hagiya, Science 288, 1223 (2000
8. R. S. Braich, N. Chelyapov, C. Johnson, P. W. K. Rothemund, and L. Adleman, Science 296, 499 (2002
9. A. J. Turberfield, J. C. Mitchell, B. Yurke, A. P. Mills, Jr., M. I. Blakey, and F. C. Simmel, Phys. Rev. Lett. 90, 118102 (2003
10. B. Yurke, A. J. Turberfield, A. P. Mills, Jr., F. C. Simmel, and J. L. Neumann, Nature 406, 605 (2000
11. A. P. Mills, Jr., Trends in Biotechnol. 20, 137 (2001
12. Z. Deng, S. H. Lee, and C. Mao, J. Nanosci. Nanotechnol. 5, 1954 (2005
13. Q. Zhang and B. Wang, J. Comput. Theor. Nanosci. 7, 1120 (2010
14. Y. Huang, Z. Cheng, J. Xu, X. Shi, and K. Zhou, J. Comput. Theor. Nanosci. 7, 826 (2010
15. Z. Chen and X. Geng, J. Comput. Theor. Nanosci. 7, 840 (2010
16. B. Wang, Q. Zhang, R. Zhang, and C. Xu, J. Comput. Theor. Nanosci. 7, 638 (2010
17. E. Winfree, F. Liu, L. A. Wenzler, and N. C. Seeman, Nature 394, 539 (1998
18. E. Winfree, DNA Based Computers, Ser. DIMACS, edited by R. Lipton and E. Baum, AMS Press, Providence, RI (1996), Vol. 27, pp. 199-221.
19. E. Winfree, J. Biomol. Struct. Dyn. S2, 263 (2000
20. Y. Benenson, T. Paz-Elizur, R. Adar, E. Keinan, Z. Livneh, and E. Shapiro, Nature 414, 430 (2001
21. Y. Benenson, B. Gil, U. Ben-Dor, R. Adar, and E. Shapiro, Nature 429, 423 (2004
22. M. N. Stojanovic and D. Stefanovic, Nat. Biotechnol. 21, 1069 (2003
23. J. Chen and D. H. Wood, PNAS 97, 1328 (2000
24. Q. Liu, L. Wang, A. G. Frutos, A. E. Condon, R. M. Corn, and L. M. Smith, Nature 403, 175 (2000
25. L. M. Smith, R. M. Corn, A. E. Condon, M. G. Lagally, A. G. Frutos, Q. Liu, and A. J. Thiel, J. Comput. Biology 5, 255 (1998
26. A. G. Frutos, Q. Liu, A. J. Thiel, A. M. Sanner, A. E. Condon, L. M. Smith, and R. M. Corn, Nucleic Acids Res. 25, 4748 (1997
27. A. G. Frutos, L. M. Smith, and R. M. Corn, J. Am. Chem. Soc. 120, 10277 (1998
28. C. Mao, T. H. LaBean, J. H. Reif, N. C. Seeman, Nature 407, 493 (2000
29. Y. Huang, J. Shirajian, A. Schroder, Z. Yao, T. Summers, D. Hodko, and R. Sosnowski, Electrophoresis 25, 3106 (2004
30. A. A. Sethi, A. Tybjaerg-Hansen, R. V. Andersen, and B. G. Nordestgaard, Clin. Chem. 50, 443 (2004
31. R. G. Sosnowski, E. Tu, W. F. Butler, J. P. O'Connell, and M. J. Heller, PNAS 94, 1119 (1997
32. Y. R. Sohni, B. Dukek, W. Taylor, E. Ricart, W. J. Sandborn, and D. J. O'Kane, Clin. Chem. 47, 1922 (2001
33. M. Ferrari, BioMEMS and Biomedical Nanotechnology Volume II: Micro/Nano Technologies for Genomics and Proteomics, Editor-inchief: M. Ferrari, edited by M. Ozkan and M. Heller, Springer, USA (2007
34. M. Chee, R. Yang, E. Hubbell, A. Berno, X. C. Huang, D. Stern, J. Winkler, D. J. Lockhart, M. S. Morris, and S. P. A. Fodor, Science 274, 610 (1996
35. M. J. Heller, A. H. Forster, and E. Tu, Electrophoresis 21, 157 (2000
36. C. Guntner, E. Tu, N. Jamshidi, R. W. Haigis, T. J. Onofrey, C. F. Edman, R. Sosnowski, B. Wallace, and M. J. Heller, Electrophoresis 23, 1543 (2002
37. A. Girigoswami, T. Li, C. Jung, H. Y. Mun, and H. G. Park, J. Nanosci. Nanotechnol. 9, 1019 (2009
38. Z. Wang, N. He, and S. Li, J. Nanosci. Nanotechnol. 9, 6465 (2009
39. P. N. Gilles, D. J. Wu, C. B. Foster, P. J. Dillon, and S. J. Chanock, Nat. Biotechnol. 17, 365 (1999
40. K. A. Schmidt, C. V. Henkel, G. Rozenberg, and H. P. Spaink, Nucleic Acids Res. 32, 4962 (2004
41. M. Jabashini, L. Zhang, F. Dang, F. Xu, M. R. Almofli, A. A. Ewis, J. Lee, Y. Nakahori, and Y. Baba, Electrophoresis 23, 1537 (2002
42. J. P. Landers, Anal. Chem. 75, 2919 (2003
43. S. Mahajan (ed.), Handbook on Semiconductors, edited by T. Moss, North-Holland, Amsterdam (1993), Vol. 3.
44. P. V. Zant, Microchip Fabrication: A Practical Guide to Semiconductor Processing, McGraw Hill, New York (1997).