-
1
-
-
84866167497
-
Reciprocal interactions of the intestinal microbiota and immune system
-
Maynard, C.L.; Elcon, C.O.; Hatton, R.D.; Weaver, C.T. Reciprocal interactions of the intestinal microbiota and immune system. Nature 2012, 489, 231–241. [CrossRef] [PubMed]
-
(2012)
Nature
, vol.489
, pp. 231-241
-
-
Maynard, C.L.1
Elcon, C.O.2
Hatton, R.D.3
Weaver, C.T.4
-
2
-
-
67650595188
-
The role of gut microbiota in drug response
-
Wilson, I.D.; Nicholson, J.K. The role of gut microbiota in drug response. Curr. Pharm. Des. 2009, 15, 1519–1523. [CrossRef] [PubMed]
-
(2009)
Curr. Pharm. Des.
, vol.15
, pp. 1519-1523
-
-
Wilson, I.D.1
Nicholson, J.K.2
-
3
-
-
84877145046
-
Gut-brain axis: How the microbiome influences anxiety and depression
-
Foster, J.A.; McVey Neufeld, K.A. Gut-brain axis: How the microbiome influences anxiety and depression. Trends Neurosci. 2013, 36, 305–312. [CrossRef] [PubMed]
-
(2013)
Trends Neurosci
, vol.36
, pp. 305-312
-
-
Foster, J.A.1
McVey Neufeld, K.A.2
-
4
-
-
84875826371
-
The human gut microbiome and body metabolism: Implications for obesity and diabetes
-
Devaraj, S.; Hemarajata, P.; Versalovic, J. The human gut microbiome and body metabolism: Implications for obesity and diabetes. Clin. Chem. 2013, 59, 617–628. [CrossRef] [PubMed]
-
(2013)
Clin. Chem.
, vol.59
, pp. 617-628
-
-
Devaraj, S.1
Hemarajata, P.2
Versalovic, J.3
-
5
-
-
84866168894
-
Functional interactions between the gut microbiota and host metabolism
-
Tremaroli, V.; Backhed, F. Functional interactions between the gut microbiota and host metabolism. Nature 2012, 489, 242–249. [CrossRef] [PubMed]
-
(2012)
Nature
, vol.489
, pp. 242-249
-
-
Tremaroli, V.1
Backhed, F.2
-
6
-
-
85014459597
-
Evolving as a holobiont
-
Richardson, L.A. Evolving as a holobiont. PLoS Biol. 2017, 15, e2002168. [CrossRef] [PubMed]
-
(2017)
Plos Biol
, vol.15
-
-
Richardson, L.A.1
-
7
-
-
84869411336
-
A symbiotic view of life: We have never been individuals
-
Gilbert, S.F.; Sapp, J.; Tauber, A.I. A symbiotic view of life: We have never been individuals. Q. Rev. Biol. 2012, 87, 325–341. [CrossRef] [PubMed]
-
(2012)
Q. Rev. Biol.
, vol.87
, pp. 325-341
-
-
Gilbert, S.F.1
Sapp, J.2
Tauber, A.I.3
-
8
-
-
84965103759
-
Holes in the hologenome: Why host-microbe symbioses are not holobionts
-
[CrossRef] [PubMed]
-
Douglas, A.E.; Werren, J.H. Holes in the hologenome: Why host-microbe symbioses are not holobionts. Mbio 2016, 7, e02099. [CrossRef] [PubMed]
-
(2016)
Mbio
, vol.7
-
-
Douglas, A.E.1
Werren, J.H.2
-
9
-
-
84890461111
-
Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
-
Jakobsson, H.E.; Abrahamsson, T.R.; Jenmalm, M.C.; Harris, K.; Quince, C.; Jernberg, C.; Björksténet, B.; Engstrand, L.; Andersson, A.F. Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section. Gut 2014, 63, 559–566. [CrossRef] [PubMed]
-
(2014)
Gut
, vol.63
, pp. 559-566
-
-
Jakobsson, H.E.1
Abrahamsson, T.R.2
Jenmalm, M.C.3
Harris, K.4
Quince, C.5
Jernberg, C.6
Björksténet, B.7
Engstrand, L.8
Andersson, A.F.9
-
10
-
-
26444484367
-
Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section
-
Jimenez, E.; Fernández, L.; Marín, M.L.; Martín, R.; Odriozola, J.M.; Nueno-Palop, C.; Narbad, A.; Olivares, M.; Xaus, J.; Rodríguez, J.M. Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section. Curr. Microbiol. 2005, 51, 270–274. [CrossRef] [PubMed]
-
(2005)
Curr. Microbiol.
, vol.51
, pp. 270-274
-
-
Jimenez, E.1
Fernández, L.2
Marín, M.L.3
Martín, R.4
Odriozola, J.M.5
Nueno-Palop, C.6
Narbad, A.7
Olivares, M.8
Xaus, J.9
Rodríguez, J.M.10
-
11
-
-
85022198188
-
A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: Implications for research on the pioneer infant microbiome
-
Perez-Munoz, M.E.; Arrieta, M.C.; Ramer-Tait, A.E.; Walter, J. A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: Implications for research on the pioneer infant microbiome. Microbiome 2017, 5, 48. [CrossRef] [PubMed]
-
(2017)
Microbiome
, vol.5
, pp. 48
-
-
Perez-Munoz, M.E.1
Arrieta, M.C.2
Ramer-Tait, A.E.3
Walter, J.4
-
12
-
-
84856085544
-
Sharing of bacterial strains between breast milk and infant feces
-
Martin, V.; Maldonado-Barragán, A.; Moles, L.; Rodriguez-Baños, M.; Campo, R.D.; Fernández, L.; Rodríguez, J.M.; Jiménez, E. Sharing of bacterial strains between breast milk and infant feces. J. Hum. Lact. 2012, 28, 36–44. [CrossRef] [PubMed]
-
(2012)
J. Hum. Lact.
, vol.28
, pp. 36-44
-
-
Martin, V.1
Maldonado-Barragán, A.2
Moles, L.3
Rodriguez-Baños, M.4
Campo, R.D.5
Fernández, L.6
Rodríguez, J.M.7
Jiménez, E.8
-
13
-
-
84906944200
-
Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding
-
Jost, T.; Lacroix, C.; Braegger, C.P.; Rochat, F.; Chassard, C. Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding. Environ. Microbiol. 2014, 16, 2891–2904. [CrossRef] [PubMed]
-
(2014)
Environ. Microbiol.
, vol.16
, pp. 2891-2904
-
-
Jost, T.1
Lacroix, C.2
Braegger, C.P.3
Rochat, F.4
Chassard, C.5
-
14
-
-
33947150385
-
Bacterial imprinting of the neonatal immune system: Lessons from maternal cells?
-
Perez, P.F.; Doré, J.; Leclerc, M.; Levenez, F.; Benyacoub, J.; Serrant, P.; Segura-Roggero, I.; Schiffrin, E.J.; Donnet-Hughes, A. Bacterial imprinting of the neonatal immune system: Lessons from maternal cells? Pediatrics 2007, 119, e724–e732. [CrossRef] [PubMed]
-
(2007)
Pediatrics
, vol.119
, pp. e724-e732
-
-
Perez, P.F.1
Doré, J.2
Leclerc, M.3
Levenez, F.4
Benyacoub, J.5
Serrant, P.6
Segura-Roggero, I.7
Schiffrin, E.J.8
Donnet-Hughes, A.9
-
15
-
-
85006184217
-
Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION portable nanopore sequencer
-
Benitez-Paez, A.; Portune, K.J.; Sanz, Y. Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION portable nanopore sequencer. Gigascience 2016, 5, 4. [CrossRef] [PubMed]
-
(2016)
Gigascience
, vol.5
, pp. 4
-
-
Benitez-Paez, A.1
Portune, K.J.2
Sanz, Y.3
-
16
-
-
84943606160
-
ConStrains identifies microbial strains in metagenomic datasets
-
Luo, C.; Knight, R.; Siljander, H.; Knip, M.; Xavier, R.J.; Gevers, D. ConStrains identifies microbial strains in metagenomic datasets. Nat. Biotechnol. 2015, 33, 1045–1052. [CrossRef] [PubMed]
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1045-1052
-
-
Luo, C.1
Knight, R.2
Siljander, H.3
Knip, M.4
Xavier, R.J.5
Gevers, D.6
-
17
-
-
84968547366
-
A Model-based approach for species abundance quantification based on shotgun metagenomic data
-
Chen, E.Z.; Bushman, F.D.; Li, H.Z. A Model-based approach for species abundance quantification based on shotgun metagenomic data. Stat. Biosci. 2017, 9, 13–27. [CrossRef] [PubMed]
-
(2017)
Stat. Biosci.
, vol.9
, pp. 13-27
-
-
Chen, E.Z.1
Bushman, F.D.2
Li, H.Z.3
-
18
-
-
85029705497
-
Evaluation of ddRAD seq for reduced representation metagenome sequencing
-
Liu, M.Y.; Worden, P.; Monahan, L.G.; DeMaere, M.Z.; Burke, C.M.; Djordjevic, S.P.; Charles, I.G.; Darling, A.E. Evaluation of ddRAD seq for reduced representation metagenome sequencing. PeerJ 2017, 5, e3837. [CrossRef] [PubMed]
-
(2017)
Peerj
, vol.5
-
-
Liu, M.Y.1
Worden, P.2
Monahan, L.G.3
Demaere, M.Z.4
Burke, C.M.5
Djordjevic, S.P.6
Charles, I.G.7
Darling, A.E.8
-
19
-
-
0028834605
-
AFLP: A new technique for DNA fingerprinting
-
Vos, P.; Hogers, R.; Bleeker, M.; Reijans, M.; van de Lee, T.; Hornes, M.; Frijters, A.; Pot, J.; Peleman, J.; Kuiper, M. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 1995, 23, 4407–4414. [CrossRef] [PubMed]
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4407-4414
-
-
Vos, P.1
Hogers, R.2
Bleeker, M.3
Reijans, M.4
van de Lee, T.5
Hornes, M.6
Frijters, A.7
Pot, J.8
Peleman, J.9
Kuiper, M.10
-
20
-
-
85046751879
-
Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota
-
Ravi, A.; Avershina, E.; Angell, I.L.; Ludvigsen, J.; Manohar, P.; Padmanaban, S.; Nachimuthu, R.; Snipen, L.; Rudi, K. Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota. J. Microbiol. Methods 2018. [CrossRef] [PubMed]
-
(2018)
J. Microbiol. Methods
-
-
Ravi, A.1
Avershina, E.2
Angell, I.L.3
Ludvigsen, J.4
Manohar, P.5
Padmanaban, S.6
Nachimuthu, R.7
Snipen, L.8
Rudi, K.9
-
21
-
-
77955856378
-
Probiotics in pregnant women to prevent allergic disease: A randomized, double-blind trial
-
Dotterud, C.K.; Storrø, O.; Johnsen, R.; Oien, T. Probiotics in pregnant women to prevent allergic disease: A randomized, double-blind trial. Br. J. Dermatol. 2010, 163, 616–623. [CrossRef] [PubMed]
-
(2010)
Br. J. Dermatol.
, vol.163
, pp. 616-623
-
-
Dotterud, C.K.1
Storrø, O.2
Johnsen, R.3
Oien, T.4
-
22
-
-
85039050022
-
Breastfeeding-associated microbiota in human milk following supplementation with Lactobacillus rhamnosus GG, Lactobacillus acidophilus La-5, and Bifidobacterium animalis ssp. Lactis Bb-12
-
Simpson, M.R.; Avershina, E.; Storrø, O.; Johnsen, R.; Rudi, K.; Øien, T. Breastfeeding-associated microbiota in human milk following supplementation with Lactobacillus rhamnosus GG, Lactobacillus acidophilus La-5, and Bifidobacterium animalis ssp. lactis Bb-12. J. Dairy Sci. 2018, 101, 889–899. [CrossRef] [PubMed]
-
(2018)
J. Dairy Sci.
, vol.101
, pp. 889-899
-
-
Simpson, M.R.1
Avershina, E.2
Storrø, O.3
Johnsen, R.4
Rudi, K.5
Øien, T.6
-
23
-
-
85038254617
-
Diversity of vaginal microbiota increases by the time of labor onset
-
Avershina, E.; Slangsvold, S.; Simpson, M.R.; Storrø, O.; Johnsen, R.; Øien, T.; Rudi, K. Diversity of vaginal microbiota increases by the time of labor onset. Sci. Rep. 2017, 7, 17558. [CrossRef] [PubMed]
-
(2017)
Sci. Rep.
, vol.7
, pp. 17558
-
-
Avershina, E.1
Slangsvold, S.2
Simpson, M.R.3
Storrø, O.4
Johnsen, R.5
Øien, T.6
Rudi, K.7
-
24
-
-
85027951890
-
Transition from infant- to adult-like gut microbiota
-
Avershina, E.; Lundgård, K.; Sekelja, M.; Dotterud, C.; Storrø, O.; Øien, T.; Johnsen, R.; Rudi, K. Transition from infant- to adult-like gut microbiota. Environ. Microbiol. 2016, 18, 2226–2236. [CrossRef] [PubMed]
-
(2016)
Environ. Microbiol.
, vol.18
, pp. 2226-2236
-
-
Avershina, E.1
Lundgård, K.2
Sekelja, M.3
Dotterud, C.4
Storrø, O.5
Øien, T.6
Johnsen, R.7
Rudi, K.8
-
25
-
-
84996485184
-
-
University of California: Berkeley, CA, USA
-
Bushnell, B. BBMap Short Read Aligner; University of California: Berkeley, CA, USA, 2015.
-
(2015)
Bbmap Short Read Aligner
-
-
Bushnell, B.1
-
26
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R.C. UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 2013, 10, 996–998. [CrossRef] [PubMed]
-
(2013)
Nat. Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
27
-
-
85030771846
-
Strains, functions and dynamics in the expanded Human Microbiome Project
-
Lloyd-Price, J.; Mahurkar, A.; Rahnavard, G.; Crabtree, J.; Orvis, J.; Hall, A.B.; Brady, A.; Creasy, H.H.; McCracken, C.; Giglio, M.G.; et al. Strains, functions and dynamics in the expanded Human Microbiome Project. Nature 2017, 550, 61–66. [CrossRef] [PubMed]
-
(2017)
Nature
, vol.550
, pp. 61-66
-
-
Lloyd-Price, J.1
Mahurkar, A.2
Rahnavard, G.3
Crabtree, J.4
Orvis, J.5
Hall, A.B.6
Brady, A.7
Creasy, H.H.8
McCracken, C.9
Giglio, M.G.10
-
28
-
-
84881484788
-
Cohabiting family members share microbiota with one another and with their dogs
-
Song, S.J.; Lauber, C.; Costello, E.K.; Lozupone, C.A.; Humphrey, G.; Berg-Lyons, D.; Caporaso, J.G.; Knights, D.; Clemente, J.C.; Nakielny, S.; et al. Cohabiting family members share microbiota with one another and with their dogs. Elife 2013, 2, e00458. [CrossRef] [PubMed]
-
(2013)
Elife
, vol.2
-
-
Song, S.J.1
Lauber, C.2
Costello, E.K.3
Lozupone, C.A.4
Humphrey, G.5
Berg-Lyons, D.6
Caporaso, J.G.7
Knights, D.8
Clemente, J.C.9
Nakielny, S.10
-
29
-
-
49449095074
-
Oral administration of Lactobacillus strains isolated from breast milk as an alternative for the treatment of infectious mastitis during lactation
-
Jimenez, E.; Fernández, L.; Maldonado, A.; Martín, R.; Olivares, M.; Xaus, J.; Rodríguez, J.M. Oral administration of Lactobacillus strains isolated from breast milk as an alternative for the treatment of infectious mastitis during lactation. Appl. Environ. Microbiol. 2008, 74, 4650–4655. [CrossRef] [PubMed]
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 4650-4655
-
-
Jimenez, E.1
Fernández, L.2
Maldonado, A.3
Martín, R.4
Olivares, M.5
Xaus, J.6
Rodríguez, J.M.7
-
30
-
-
77952960280
-
Treatment of infectious mastitis during lactation: Antibiotics versus oral administration of Lactobacilli isolated from breast milk
-
Arroyo, R.; Martín, V.; Maldonado, A.; Jiménez, E.; Fernández, L.; Rodríguez, J.M. Treatment of infectious mastitis during lactation: Antibiotics versus oral administration of Lactobacilli isolated from breast milk. Clin. Infect. Dis. 2010, 50, 1551–1558. [CrossRef] [PubMed]
-
(2010)
Clin. Infect. Dis.
, vol.50
, pp. 1551-1558
-
-
Arroyo, R.1
Martín, V.2
Maldonado, A.3
Jiménez, E.4
Fernández, L.5
Rodríguez, J.M.6
-
31
-
-
84910677920
-
The origin of human milk bacteria: Is there a bacterial entero-mammary pathway during late pregnancy and lactation?
-
Rodriguez, J.M. The origin of human milk bacteria: Is there a bacterial entero-mammary pathway during late pregnancy and lactation? Adv. Nutr. 2014, 5, 779–784. [CrossRef] [PubMed]
-
(2014)
Adv. Nutr.
, vol.5
, pp. 779-784
-
-
Rodriguez, J.M.1
-
32
-
-
84986891147
-
Characterization of bacterial isolates from the microbiota of mothers’ breast milk and their infants
-
Kozak, K.; Charbonneau, D.; Sanozky-Dawes, R.; Klaenhammer, T. Characterization of bacterial isolates from the microbiota of mothers’ breast milk and their infants. Gut Microbes 2015, 6, 341–351. [CrossRef] [PubMed]
-
(2015)
Gut Microbes
, vol.6
, pp. 341-351
-
-
Kozak, K.1
Charbonneau, D.2
Sanozky-Dawes, R.3
Klaenhammer, T.4
-
33
-
-
85019683574
-
Quantification, isolation and characterization of Bifidobacterium from the vaginal microbiomes of reproductive aged women
-
Freitas, A.C.; Hill, J.E. Quantification, isolation and characterization of Bifidobacterium from the vaginal microbiomes of reproductive aged women. Anaerobe 2017, 47, 145–156. [CrossRef] [PubMed]
-
(2017)
Anaerobe
, vol.47
, pp. 145-156
-
-
Freitas, A.C.1
Hill, J.E.2
-
34
-
-
85014062216
-
Survival of vaginal microorganisms in three commercially available transport systems
-
DeMarco, A.L.; Rabe, L.K.; Austin, M.N.; Stoner, K.A.; Avolia, H.A.; Meyn, L.A.; Hillier, S.L. Survival of vaginal microorganisms in three commercially available transport systems. Anaerobe 2017, 45, 44–49. [CrossRef] [PubMed]
-
(2017)
Anaerobe
, vol.45
, pp. 44-49
-
-
Demarco, A.L.1
Rabe, L.K.2
Austin, M.N.3
Stoner, K.A.4
Avolia, H.A.5
Meyn, L.A.6
Hillier, S.L.7
-
35
-
-
85019894410
-
Differentiation of Bifidobacterium longum subspecies longum and infantis by quantitative PCR using functional gene targets
-
Lawley, B.; Munro, K.; Hughes, A.; Hodgkinson, A.J.; Prosser, C.G.; Lowry, D.; Zhou, S.J.; Makrides, M.; Gibson, R.A.; Lay, C.; et al. Differentiation of Bifidobacterium longum subspecies longum and infantis by quantitative PCR using functional gene targets. PeerJ 2017, 5, e3375. [CrossRef] [PubMed]
-
(2017)
Peerj
, vol.5
-
-
Lawley, B.1
Munro, K.2
Hughes, A.3
Hodgkinson, A.J.4
Prosser, C.G.5
Lowry, D.6
Zhou, S.J.7
Makrides, M.8
Gibson, R.A.9
Lay, C.10
-
36
-
-
84871879285
-
Bifidobacterial succession and correlation networks in a large unselected cohort of mothers and their children
-
Avershina, E.; Storrø, O.; Øien, T.; Johnsen, R.; Wilson, R.; Egeland, T.; Rudi, K. Bifidobacterial succession and correlation networks in a large unselected cohort of mothers and their children. Appl. Environ. Microbiol. 2013, 79, 497–507. [CrossRef] [PubMed]
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 497-507
-
-
Avershina, E.1
Storrø, O.2
Øien, T.3
Johnsen, R.4
Wilson, R.5
Egeland, T.6
Rudi, K.7
-
37
-
-
33846871043
-
Cultivation-independent assessment of the bacterial diversity of breast milk among healthy women
-
Martin, R.; Heilig, H.G.; Zoetendal, E.G.; Jiménez, E.; Fernández, L.; Smidt, H.; Rodríguez, J.M. Cultivation-independent assessment of the bacterial diversity of breast milk among healthy women. Res. Microbiol. 2007, 158, 31–37. [CrossRef] [PubMed]
-
(2007)
Res. Microbiol.
, vol.158
, pp. 31-37
-
-
Martin, R.1
Heilig, H.G.2
Zoetendal, E.G.3
Jiménez, E.4
Fernández, L.5
Smidt, H.6
Rodríguez, J.M.7
-
38
-
-
84958213737
-
Vaginal versus obstetric infection Escherichia coli isolates among pregnant women: Antimicrobial resistance and genetic virulence profile
-
Saez-Lopez, E.; Guiral, E.; Fernández-Orth, D.; Villanueva, S.; Goncé, A.; López, M.; Teixidó, I.; Pericot, A.; Figueras, F.; Palacio, M.; et al. Vaginal versus obstetric infection Escherichia coli isolates among pregnant women: Antimicrobial resistance and genetic virulence profile. PLoS ONE 2016, 11, e0146531. [CrossRef] [PubMed]
-
(2016)
Plos ONE
, vol.11
-
-
Saez-Lopez, E.1
Guiral, E.2
Fernández-Orth, D.3
Villanueva, S.4
Goncé, A.5
López, M.6
Teixidó, I.7
Pericot, A.8
Figueras, F.9
Palacio, M.10
|