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Volumn 10, Issue 5, 2018, Pages

A CRISPR-cas9-based toolkit for fast and precise in vivo genetic engineering of Bacillus subtilis phages

Author keywords

Artificial; Bacillus subtilis TS01; Bacteriophage; CRISPR Cas9; CutSPR; Phage; VB_BsuP Goe1; Virus

Indexed keywords

AGAR GEL ELECTROPHORESIS; ARTICLE; BACILLUS SUBTILIS; BACTERIOPHAGE; CONTROLLED STUDY; CRISPR-CAS9 SYSTEM; ESCHERICHIA COLI; GENE DELETION; GENE INSERTION; GENETIC ENGINEERING; GENETIC RECOMBINATION; GENOTYPE; MOLECULAR CLONING; MUTAGENESIS; NONHUMAN; PLAQUE ASSAY; PLASMID; POLYMERASE CHAIN REACTION; TRANSMISSION ELECTRON MICROSCOPY; BACILLUS PHAGE; CRISPR CAS SYSTEM; GENETICS; PROPHAGE; REPRODUCIBILITY; SOFTWARE; VIROLOGY;

EID: 85047143606     PISSN: None     EISSN: 19994915     Source Type: Journal    
DOI: 10.3390/v10050241     Document Type: Article
Times cited : (35)

References (47)
  • 1
    • 84890905184 scopus 로고    scopus 로고
    • Novel bacteriophage therapy for controlling metallo-beta-lactamase producing Pseudomonas aeruginosa infection in catfish
    • [CrossRef]
    • Khairnar, K.; Raut, M.P.; Chandekar, R.H.; Sanmukh, S.G.; Paunikar, W.N. Novel bacteriophage therapy for controlling metallo-beta-lactamase producing Pseudomonas aeruginosa infection in catfish. BMC Vet. Res. 2013, 9, 264. [CrossRef]
    • (2013) BMC Vet. Res , vol.9 , pp. 264
    • Khairnar, K.1    Raut, M.P.2    Chandekar, R.H.3    Sanmukh, S.G.4    Paunikar, W.N.5
  • 2
    • 85006700632 scopus 로고    scopus 로고
    • Application of Bacteriophage-containing Aerosol against Nosocomial Transmission of Carbapenem-Resistant Acinetobacter baumannii in an Intensive Care Unit
    • [CrossRef]
    • Ho, Y.-H.; Tseng, C.-C.; Wang, L.-S.; Chen, Y.-T.; Ho, G.-J.; Lin, T.-Y.; Wang, L.-Y.; Chen, L.-K. Application of Bacteriophage-containing Aerosol against Nosocomial Transmission of Carbapenem-Resistant Acinetobacter baumannii in an Intensive Care Unit. PLoS ONE 2016, 11, e0168380. [CrossRef]
    • (2016) Plos ONE , vol.11
    • Ho, Y.-H.1    Tseng, C.-C.2    Wang, L.-S.3    Chen, Y.-T.4    Ho, G.-J.5    Lin, T.-Y.6    Wang, L.-Y.7    Chen, L.-K.8
  • 3
    • 85047131890 scopus 로고    scopus 로고
    • WHO Publishes List of Bacteria for Which New Antibiotics Are Urgently Needed
    • WHO. WHO Publishes List of Bacteria for Which New Antibiotics Are Urgently Needed. Available online: http://www.who.int/mediacentre/news/releases/2017/bacteria-antibiotics-needed/en/ (accessed on 16 November 2017).
  • 5
    • 34249090538 scopus 로고    scopus 로고
    • Biotechnological challenges of phage therapy
    • [CrossRef] [PubMed]
    • Skurnik, M.; Pajunen, M.; Kiljunen, S. Biotechnological challenges of phage therapy. Biotechnol. Lett. 2007, 29, 995–1003. [CrossRef] [PubMed]
    • (2007) Biotechnol. Lett , vol.29 , pp. 995-1003
    • Skurnik, M.1    Pajunen, M.2    Kiljunen, S.3
  • 7
    • 84991105090 scopus 로고    scopus 로고
    • Genetically Engineered Phages: A Review of Advances over the Last Decade
    • [CrossRef] [PubMed]
    • Pires, D.P.; Cleto, S.; Sillankorva, S.; Azeredo, J.; Lu, T.K. Genetically Engineered Phages: A Review of Advances over the Last Decade. Microbiol. Mol. Biol. Rev. 2016, 80, 523–543. [CrossRef] [PubMed]
    • (2016) Microbiol. Mol. Biol. Rev , vol.80 , pp. 523-543
    • Pires, D.P.1    Cleto, S.2    Sillankorva, S.3    Azeredo, J.4    Lu, T.K.5
  • 8
    • 85030698228 scopus 로고    scopus 로고
    • The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit
    • [CrossRef] [PubMed]
    • Murugan, K.; Babu, K.; Sundaresan, R.; Rajan, R.; Sashital, D.G. The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit. Mol. Cell 2017, 68, 15–25. [CrossRef] [PubMed]
    • (2017) Mol. Cell , vol.68 , pp. 15-25
    • Murugan, K.1    Babu, K.2    Sundaresan, R.3    Rajan, R.4    Sashital, D.G.5
  • 9
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • [CrossRef] [PubMed]
    • Terns, M.P.; Terns, R.M. CRISPR-based adaptive immune systems. Curr. Opin. Microbiol. 2011, 14, 321–327. [CrossRef] [PubMed]
    • (2011) Curr. Opin. Microbiol , vol.14 , pp. 321-327
    • Terns, M.P.1    Terns, R.M.2
  • 10
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • [CrossRef] [PubMed]
    • Wiedenheft, B.; Sternberg, S.H.; Doudna, J.A. RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012, 482, 331–338. [CrossRef] [PubMed]
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 11
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
    • [CrossRef] [PubMed]
    • Bhaya, D.; Davison, M.; Barrangou, R. CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation. Annu. Rev. Genet. 2011, 45, 273–297. [CrossRef] [PubMed]
    • (2011) Annu. Rev. Genet , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 13
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
    • [CrossRef] [PubMed]
    • Sternberg, S.H.; Redding, S.; Jinek, M.; Greene, E.C.; Doudna, J.A. DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 2014, 507, 62–67. [CrossRef] [PubMed]
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 15
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • [CrossRef] [PubMed]
    • Jinek, M.; Chylinski, K.; Fonfara, I.; Hauer, M.; Doudna, J.A.; Charpentier, E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337, 816–821. [CrossRef] [PubMed]
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 16
    • 84894476108 scopus 로고    scopus 로고
    • Efficient engineering of a bacteriophage genome using the type I-E CRISPR-Cas system
    • [CrossRef] [PubMed]
    • Kiro, R.; Shitrit, D.; Qimron, U. Efficient engineering of a bacteriophage genome using the type I-E CRISPR-Cas system. RNA Biol. 2014, 11, 42–44. [CrossRef] [PubMed]
    • (2014) RNA Biol , vol.11 , pp. 42-44
    • Kiro, R.1    Shitrit, D.2    Qimron, U.3
  • 17
    • 84906216646 scopus 로고    scopus 로고
    • CRISPR-Cas: An efficient tool for genome engineering of virulent bacteriophages
    • [CrossRef] [PubMed]
    • Martel, B.; Moineau, S. CRISPR-Cas: An efficient tool for genome engineering of virulent bacteriophages. Nucleic Acids Res. 2014, 42, 9504–9513. [CrossRef] [PubMed]
    • (2014) Nucleic Acids Res , vol.42 , pp. 9504-9513
    • Martel, B.1    Moineau, S.2
  • 18
    • 85031892641 scopus 로고    scopus 로고
    • Engineering of Bacteriophage T4 Genome Using CRISPR-Cas9
    • [CrossRef] [PubMed]
    • Tao, P.; Wu, X.; Tang, W.-C.; Zhu, J.; Rao, V. Engineering of Bacteriophage T4 Genome Using CRISPR-Cas9. ACS Synth. Biol. 2017. [CrossRef] [PubMed]
    • (2017) ACS Synth. Biol
    • Tao, P.1    Wu, X.2    Tang, W.-C.3    Zhu, J.4    Rao, V.5
  • 19
    • 85020703557 scopus 로고    scopus 로고
    • Genome Engineering of Virulent Lactococcal Phages Using CRISPR-Cas9
    • [CrossRef] [PubMed]
    • Lemay, M.L.; Tremblay, D.M.; Moineau, S. Genome Engineering of Virulent Lactococcal Phages Using CRISPR-Cas9. ACS Synth. Biol. 2017, 6, 1351–1358. [CrossRef] [PubMed]
    • (2017) ACS Synth. Biol , vol.6 , pp. 1351-1358
    • Lemay, M.L.1    Tremblay, D.M.2    Moineau, S.3
  • 20
    • 85047112377 scopus 로고    scopus 로고
    • Anthrax. In Facts on File, 1st ed.; Alcano, I.E., Ed.; Facts on File News Services: New York, NY, USA, ISBN 9780791073025
    • Decker, J.M. Anthrax. In Facts on File, 1st ed.; Alcano, I.E., Ed.; Facts on File News Services: New York, NY, USA, 2003; ISBN 9780791073025.
    • (2003)
    • Decker, J.M.1
  • 21
    • 14844337446 scopus 로고    scopus 로고
    • Bacillus cereus food poisoning and its toxins
    • [PubMed]
    • Schoeni, J.L.; Wong, A.C.L. Bacillus cereus food poisoning and its toxins. J. Food Prot. 2005, 68, 636–648. [PubMed]
    • (2005) J. Food Prot , vol.68 , pp. 636-648
    • Schoeni, J.L.1    Wong, A.C.L.2
  • 22
    • 1942538348 scopus 로고    scopus 로고
    • Developments in the use of Bacillus species for industrial production
    • [CrossRef] [PubMed]
    • Schallmey, M.; Singh, A.; Ward, O.P. Developments in the use of Bacillus species for industrial production. Can. J. Microbiol. 2004, 50, 1–17. [CrossRef] [PubMed]
    • (2004) Can. J. Microbiol , vol.50 , pp. 1-17
    • Schallmey, M.1    Singh, A.2    Ward, O.P.3
  • 23
    • 84987875388 scopus 로고    scopus 로고
    • Editing of the Bacillus subtilis Genome by the CRISPR-Cas9 System
    • [CrossRef] [PubMed]
    • Altenbuchner, J. Editing of the Bacillus subtilis Genome by the CRISPR-Cas9 System. Appl. Environ. Microbiol. 2016, 82, 5421–5427. [CrossRef] [PubMed]
    • (2016) Appl. Environ. Microbiol , vol.82 , pp. 5421-5427
    • Altenbuchner, J.1
  • 24
    • 84992183864 scopus 로고    scopus 로고
    • Phage vB_BsuP-Goe1: The smallest identified lytic phage of Bacillus subtilis
    • [CrossRef] [PubMed]
    • Willms, I.M.; Hertel, R. Phage vB_BsuP-Goe1: The smallest identified lytic phage of Bacillus subtilis. FEMS Microbiol. Lett. 2016, 363. [CrossRef] [PubMed]
    • (2016) FEMS Microbiol. Lett , pp. 363
    • Willms, I.M.1    Hertel, R.2
  • 26
    • 0001615271 scopus 로고
    • Transformation of biochemically deficient strains of bacillus subtilis by deoxyribonucleate
    • [CrossRef] [PubMed]
    • Spizizen, J. Transformation of biochemically deficient strains of bacillus subtilis by deoxyribonucleate. Proc. Natl. Acad. Sci. USA 1958, 44, 1072–1078. [CrossRef] [PubMed]
    • (1958) Proc. Natl. Acad. Sci. USA , vol.44 , pp. 1072-1078
    • Spizizen, J.1
  • 27
    • 85027950319 scopus 로고    scopus 로고
    • Correction: Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity
    • [CrossRef] [PubMed]
    • Grose, J.H.; Jensen, G.L.; Burnett, S.H.; Breakwell, D.P. Correction: Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity. BMC Genom. 2014, 15, 1184. [CrossRef] [PubMed]
    • (2014) BMC Genom , vol.15 , pp. 1184
    • Grose, J.H.1    Jensen, G.L.2    Burnett, S.H.3    Breakwell, D.P.4
  • 29
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • [CrossRef] [PubMed]
    • Santa Lucia, J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 1998, 95, 1460–1465. [CrossRef] [PubMed]
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1460-1465
    • Santa Lucia, J.1
  • 30
    • 84873799110 scopus 로고
    • Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli
    • Bertani, G. Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J. Bacteriol. 1951, 62, 293–300.
    • (1951) J. Bacteriol , vol.62 , pp. 293-300
    • Bertani, G.1
  • 31
    • 0004136246 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, USA, ISBN 0879695773
    • Sambrook, J.; Russell, D.W. Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, USA, 2001; ISBN 0879695773.
    • (2001) Molecular Cloning: A Laboratory Manual
    • Sambrook, J.1    Russell, D.W.2
  • 32
    • 84979500223 scopus 로고    scopus 로고
    • Development of a markerless gene deletion system for Bacillus subtilis based on the mannose phosphoenolpyruvate-dependent phosphotransferase system
    • [CrossRef] [PubMed]
    • Wenzel, M.; Altenbuchner, J. Development of a markerless gene deletion system for Bacillus subtilis based on the mannose phosphoenolpyruvate-dependent phosphotransferase system. Microbiology 2015, 161, 1942–1949. [CrossRef] [PubMed]
    • (2015) Microbiology , vol.161 , pp. 1942-1949
    • Wenzel, M.1    Altenbuchner, J.2
  • 33
    • 84953878987 scopus 로고    scopus 로고
    • Construction of a Super-Competent Bacillus subtilis 168 Using the PmtlA-comKS Inducible Cassette
    • [CrossRef] [PubMed]
    • Rahmer, R.; Morabbi Heravi, K.; Altenbuchner, J. Construction of a Super-Competent Bacillus subtilis 168 Using the PmtlA-comKS Inducible Cassette. Front. Microbiol. 2015, 6, 1–11. [CrossRef] [PubMed]
    • (2015) Front. Microbiol , vol.6 , pp. 1-11
    • Rahmer, R.1    Morabbi Heravi, K.2    Altenbuchner, J.3
  • 34
    • 85020943183 scopus 로고    scopus 로고
    • Characterization of Bacillus subtilis Viruses vB_BsuM-Goe2 and vB_BsuM-Goe3
    • [CrossRef] [PubMed]
    • Willms, I.; Hoppert, M.; Hertel, R. Characterization of Bacillus subtilis Viruses vB_BsuM-Goe2 and vB_BsuM-Goe3. Viruses 2017, 9, 146. [CrossRef] [PubMed]
    • (2017) Viruses , vol.9 , pp. 146
    • Willms, I.1    Hoppert, M.2    Hertel, R.3
  • 35
    • 0014301425 scopus 로고
    • Regulation of glutamine synthetase. XII. Electron microscopy of the enzyme from Escherichia coli
    • [CrossRef] [PubMed]
    • Valentine, R.C.; Shapiro, B.M.; Stadtman, E.R. Regulation of glutamine synthetase. XII. Electron microscopy of the enzyme from Escherichia coli. Biochemistry 1968, 7, 2143–2152. [CrossRef] [PubMed]
    • (1968) Biochemistry , vol.7 , pp. 2143-2152
    • Valentine, R.C.1    Shapiro, B.M.2    Stadtman, E.R.3
  • 37
    • 84997702038 scopus 로고    scopus 로고
    • First Insights into the Completely Annotated Genome Sequence of Bacillus licheniformis Strain 9945A
    • [CrossRef] [PubMed]
    • Rachinger, M.; Volland, S.; Meinhardt, F.; Daniel, R.; Liesegang, H. First Insights into the Completely Annotated Genome Sequence of Bacillus licheniformis Strain 9945A. Genome Announc. 2013, 1. [CrossRef] [PubMed]
    • (2013) Genome Announc , pp. 1
    • Rachinger, M.1    Volland, S.2    Meinhardt, F.3    Daniel, R.4    Liesegang, H.5
  • 38
    • 85047155926 scopus 로고    scopus 로고
    • Bacillus Phage phi29, Complete Genome
    • Villegas, A.P.; Lingohr, E.J.; Ceyssens, P.-J.; Kropinski, A.M. Bacillus Phage phi29, Complete Genome. Available online: http://www.ncbi.nlm.nih.gov/nuccore/194186868 (accessed on 3 January 2018).
    • Villegas, A.P.1    Lingohr, E.J.2    Ceyssens, P.-J.3    Kropinski, A.M.4
  • 39
    • 0017622113 scopus 로고
    • Morphogenesis of bacteriophage phi 29 of Bacillus subtilis: Mapping and functional analysis of the head fiber gene
    • [PubMed]
    • Reilly, B.E.; Nelson, R.A.; Anderson, D.L. Morphogenesis of bacteriophage phi 29 of Bacillus subtilis: Mapping and functional analysis of the head fiber gene. J. Virol. 1977, 24, 363–377. [PubMed]
    • (1977) J. Virol , vol.24 , pp. 363-377
    • Reilly, B.E.1    Nelson, R.A.2    Anderson, D.L.3
  • 40
    • 0015418567 scopus 로고
    • Head fibers of bacteriophage phi 29
    • [CrossRef]
    • Salas, M.; Vásquez, C.; Méndez, E.; Viñuela, E. Head fibers of bacteriophage phi 29. Virology 1972, 50, 180–188. [CrossRef]
    • (1972) Virology , vol.50 , pp. 180-188
    • Salas, M.1    Vásquez, C.2    Méndez, E.3    Viñuela, E.4
  • 41
    • 0022641866 scopus 로고
    • Structure of a beta-galactosidase gene of Bacillus stearothermophilus
    • [CrossRef] [PubMed]
    • Hirata, H.; Fukazawa, T.; Negoro, S.; Okada, H. Structure of a beta-galactosidase gene of Bacillus stearothermophilus. J. Bacteriol. 1986, 166, 722–727. [CrossRef] [PubMed]
    • (1986) J. Bacteriol , vol.166 , pp. 722-727
    • Hirata, H.1    Fukazawa, T.2    Negoro, S.3    Okada, H.4
  • 44
    • 84940106526 scopus 로고    scopus 로고
    • CRISPR-Cas9 Based Engineering of Actinomycetal Genomes
    • [CrossRef] [PubMed]
    • Tong, Y.; Charusanti, P.; Zhang, L.; Weber, T.; Lee, S.Y. CRISPR-Cas9 Based Engineering of Actinomycetal Genomes. ACS Synth. Biol. 2015, 4, 1020–1029. [CrossRef] [PubMed]
    • (2015) ACS Synth. Biol , vol.4 , pp. 1020-1029
    • Tong, Y.1    Charusanti, P.2    Zhang, L.3    Weber, T.4    Lee, S.Y.5
  • 45
    • 84997272235 scopus 로고    scopus 로고
    • A CRISPR-Cas9 Assisted Non-Homologous End-Joining Strategy for One-step Engineering of Bacterial Genome
    • [CrossRef] [PubMed]
    • Su, T.; Liu, F.; Gu, P.; Jin, H.; Chang, Y.; Wang, Q.; Liang, Q.; Qi, Q. A CRISPR-Cas9 Assisted Non-Homologous End-Joining Strategy for One-step Engineering of Bacterial Genome. Sci. Rep. 2016, 6, 37895. [CrossRef] [PubMed]
    • (2016) Sci. Rep , vol.6 , pp. 37895
    • Su, T.1    Liu, F.2    Gu, P.3    Jin, H.4    Chang, Y.5    Wang, Q.6    Liang, Q.7    Qi, Q.8
  • 46
    • 84970046200 scopus 로고    scopus 로고
    • Consequences of Cas9 cleavage in the chromosome of Escherichia coli
    • [CrossRef] [PubMed]
    • Cui, L.; Bikard, D. Consequences of Cas9 cleavage in the chromosome of Escherichia coli. Nucleic Acids Res. 2016, 44, 4243–4251. [CrossRef] [PubMed]
    • (2016) Nucleic Acids Res , vol.44 , pp. 4243-4251
    • Cui, L.1    Bikard, D.2
  • 47
    • 36549032156 scopus 로고    scopus 로고
    • SPINE: A method for the rapid detection and analysis of protein–protein interactions in vivo
    • [CrossRef] [PubMed]
    • Herzberg, C.; Weidinger, L.A.F.; Dörrbecker, B.; Hübner, S.; Stülke, J.; Commichau, F.M. SPINE: A method for the rapid detection and analysis of protein–protein interactions in vivo. Proteomics 2007, 7, 4032–4035. [CrossRef] [PubMed]
    • (2007) Proteomics , vol.7 , pp. 4032-4035
    • Herzberg, C.1    Weidinger, L.A.F.2    Dörrbecker, B.3    Hübner, S.4    Stülke, J.5    Commichau, F.M.6


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