메뉴 건너뛰기




Volumn 6, Issue 10, 2017, Pages 1952-1961

Engineering of Bacteriophage T4 Genome Using CRISPR-Cas9

Author keywords

Cas9 nuclease; CRISPR; genome editing; genome engineering; T4 bacteriophage

Indexed keywords

CYTOSINE; NUCLEASE; RNA LIGASE;

EID: 85031892641     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/acssynbio.7b00179     Document Type: Article
Times cited : (87)

References (46)
  • 1
    • 84947491821 scopus 로고    scopus 로고
    • A century of the phage: Past, present and future
    • Salmond, G. P. and Fineran, P. C. (2015) A century of the phage: past, present and future Nat. Rev. Microbiol. 13, 777-786 10.1038/nrmicro3564
    • (2015) Nat. Rev. Microbiol. , vol.13 , pp. 777-786
    • Salmond, G.P.1    Fineran, P.C.2
  • 2
    • 78649623974 scopus 로고    scopus 로고
    • Structure and assembly of bacteriophage T4 head
    • Rao, V. B. and Black, L. W. (2010) Structure and assembly of bacteriophage T4 head Virol. J. 7, 356 10.1186/1743-422X-7-356
    • (2010) Virol. J. , vol.7 , pp. 356
    • Rao, V.B.1    Black, L.W.2
  • 3
    • 84862860490 scopus 로고    scopus 로고
    • Phage therapy - History from Twort and d'Herelle through Soviet experience to current approaches
    • Chanishvili, N. (2012) Phage therapy - history from Twort and d'Herelle through Soviet experience to current approaches Adv. Virus Res. 83, 3-40 10.1016/B978-0-12-394438-2.00001-3
    • (2012) Adv. Virus Res. , vol.83 , pp. 3-40
    • Chanishvili, N.1
  • 4
    • 18044366747 scopus 로고    scopus 로고
    • Bacteriophages: The viruses for all seasons of molecular biology
    • Karam, J. D. (2005) Bacteriophages: the viruses for all seasons of molecular biology Virol. J. 2, 19 10.1186/1743-422X-2-19
    • (2005) Virol. J. , vol.2 , pp. 19
    • Karam, J.D.1
  • 5
    • 84891713097 scopus 로고    scopus 로고
    • A historical overview of bacteriophage therapy as an alternative to antibiotics for the treatment of bacterial pathogens
    • Wittebole, X., De Roock, S., and Opal, S. M. (2014) A historical overview of bacteriophage therapy as an alternative to antibiotics for the treatment of bacterial pathogens Virulence 5, 226-235 10.4161/viru.25991
    • (2014) Virulence , vol.5 , pp. 226-235
    • Wittebole, X.1    De Roock, S.2    Opal, S.M.3
  • 6
    • 84860389302 scopus 로고    scopus 로고
    • The next generation of bacteriophage therapy
    • Lu, T. K. and Koeris, M. S. (2011) The next generation of bacteriophage therapy Curr. Opin. Microbiol. 14, 524-531 10.1016/j.mib.2011.07.028
    • (2011) Curr. Opin. Microbiol. , vol.14 , pp. 524-531
    • Lu, T.K.1    Koeris, M.S.2
  • 7
    • 84905565239 scopus 로고    scopus 로고
    • Viruses versus bacteria-novel approaches to phage therapy as a tool against multidrug-resistant pathogens
    • Viertel, T. M., Ritter, K., and Horz, H. P. (2014) Viruses versus bacteria-novel approaches to phage therapy as a tool against multidrug-resistant pathogens J. Antimicrob. Chemother. 69, 2326-2336 10.1093/jac/dku173
    • (2014) J. Antimicrob. Chemother. , vol.69 , pp. 2326-2336
    • Viertel, T.M.1    Ritter, K.2    Horz, H.P.3
  • 9
    • 84905575652 scopus 로고    scopus 로고
    • Bacteriophages as vehicles for gene delivery into mammalian cells: Prospects and problems
    • Bakhshinejad, B. and Sadeghizadeh, M. (2014) Bacteriophages as vehicles for gene delivery into mammalian cells: prospects and problems Expert Opin. Drug Delivery 11, 1561-1574 10.1517/17425247.2014.927437
    • (2014) Expert Opin. Drug Delivery , vol.11 , pp. 1561-1574
    • Bakhshinejad, B.1    Sadeghizadeh, M.2
  • 10
    • 84921726056 scopus 로고    scopus 로고
    • Bacteriophage-derived vectors for targeted cancer gene therapy
    • Pranjol, M. Z. and Hajitou, A. (2015) Bacteriophage-derived vectors for targeted cancer gene therapy Viruses 7, 268-284 10.3390/v7010268
    • (2015) Viruses , vol.7 , pp. 268-284
    • Pranjol, M.Z.1    Hajitou, A.2
  • 11
    • 85010540173 scopus 로고    scopus 로고
    • Phage-Enabled Nanomedicine: From Probes to Therapeutics in Precision Medicine
    • Sunderland, K. S., Yang, M., and Mao, C. (2017) Phage-Enabled Nanomedicine: From Probes to Therapeutics in Precision Medicine Angew. Chem., Int. Ed. 56, 1964-1992 10.1002/anie.201606181
    • (2017) Angew. Chem., Int. Ed. , vol.56 , pp. 1964-1992
    • Sunderland, K.S.1    Yang, M.2    Mao, C.3
  • 12
    • 84884751020 scopus 로고    scopus 로고
    • Mutated and bacteriophage T4 nanoparticle arrayed F1-V immunogens from Yersinia pestis as next generation plague vaccines
    • Tao, P., Mahalingam, M., Kirtley, M. L., van Lier, C. J., Sha, J., Yeager, L. A., Chopra, A. K., and Rao, V. B. (2013) Mutated and bacteriophage T4 nanoparticle arrayed F1-V immunogens from Yersinia pestis as next generation plague vaccines PLoS Pathog. 9, e1003495 10.1371/journal.ppat.1003495
    • (2013) PLoS Pathog. , vol.9 , pp. e1003495
    • Tao, P.1    Mahalingam, M.2    Kirtley, M.L.3    Van Lier, C.J.4    Sha, J.5    Yeager, L.A.6    Chopra, A.K.7    Rao, V.B.8
  • 13
    • 84876065936 scopus 로고    scopus 로고
    • In vitro and in vivo delivery of genes and proteins using the bacteriophage T4 DNA packaging machine
    • Tao, P., Mahalingam, M., Marasa, B. S., Zhang, Z., Chopra, A. K., and Rao, V. B. (2013) In vitro and in vivo delivery of genes and proteins using the bacteriophage T4 DNA packaging machine Proc. Natl. Acad. Sci. U. S. A. 110, 5846-5851 10.1073/pnas.1300867110
    • (2013) Proc. Natl. Acad. Sci. U. S. A. , vol.110 , pp. 5846-5851
    • Tao, P.1    Mahalingam, M.2    Marasa, B.S.3    Zhang, Z.4    Chopra, A.K.5    Rao, V.B.6
  • 14
    • 84963811974 scopus 로고    scopus 로고
    • Highly Effective Soluble and Bacteriophage T4 Nanoparticle Plague Vaccines Against Yersinia pestis
    • Tao, P., Mahalingam, M., and Rao, V. B. (2016) Highly Effective Soluble and Bacteriophage T4 Nanoparticle Plague Vaccines Against Yersinia pestis Methods Mol. Biol. 1403, 499-518 10.1007/978-1-4939-3387-7-28
    • (2016) Methods Mol. Biol. , vol.1403 , pp. 499-518
    • Tao, P.1    Mahalingam, M.2    Rao, V.B.3
  • 15
    • 0017597092 scopus 로고
    • The two dispensable structural proteins (soc and hoc) of the T4 phage capsid; Their purification and properties, isolation and characterization of the defective mutants, and their binding with the defective heads in vitro
    • Ishii, T. and Yanagida, M. (1977) The two dispensable structural proteins (soc and hoc) of the T4 phage capsid; their purification and properties, isolation and characterization of the defective mutants, and their binding with the defective heads in vitro J. Mol. Biol. 109, 487-514 10.1016/S0022-2836(77)80088-0
    • (1977) J. Mol. Biol. , vol.109 , pp. 487-514
    • Ishii, T.1    Yanagida, M.2
  • 16
    • 33748920016 scopus 로고    scopus 로고
    • Bacteriophage T4 capsid: A unique platform for efficient surface assembly of macromolecular complexes
    • Li, Q., Shivachandra, S. B., Leppla, S. H., and Rao, V. B. (2006) Bacteriophage T4 capsid: a unique platform for efficient surface assembly of macromolecular complexes J. Mol. Biol. 363, 577-588 10.1016/j.jmb.2006.08.049
    • (2006) J. Mol. Biol. , vol.363 , pp. 577-588
    • Li, Q.1    Shivachandra, S.B.2    Leppla, S.H.3    Rao, V.B.4
  • 17
    • 30844452698 scopus 로고    scopus 로고
    • In vitro binding of anthrax protective antigen on bacteriophage T4 capsid surface through Hoc-capsid interactions: A strategy for efficient display of large full-length proteins
    • Shivachandra, S. B., Rao, M., Janosi, L., Sathaliyawala, T., Matyas, G. R., Alving, C. R., Leppla, S. H., and Rao, V. B. (2006) In vitro binding of anthrax protective antigen on bacteriophage T4 capsid surface through Hoc-capsid interactions: a strategy for efficient display of large full-length proteins Virology 345, 190-198 10.1016/j.virol.2005.10.037
    • (2006) Virology , vol.345 , pp. 190-198
    • Shivachandra, S.B.1    Rao, M.2    Janosi, L.3    Sathaliyawala, T.4    Matyas, G.R.5    Alving, C.R.6    Leppla, S.H.7    Rao, V.B.8
  • 18
    • 84991105090 scopus 로고    scopus 로고
    • Genetically Engineered Phages: A Review of Advances over the Last Decade
    • Pires, D. P., Cleto, S., Sillankorva, S., Azeredo, J., and Lu, T. K. (2016) Genetically Engineered Phages: a Review of Advances over the Last Decade Microbiol. Mol. Biol. Rev. 80, 523-543 10.1128/MMBR.00069-15
    • (2016) Microbiol. Mol. Biol. Rev. , vol.80 , pp. 523-543
    • Pires, D.P.1    Cleto, S.2    Sillankorva, S.3    Azeredo, J.4    Lu, T.K.5
  • 21
    • 84982855973 scopus 로고    scopus 로고
    • Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems
    • Mohanraju, P., Makarova, K. S., Zetsche, B., Zhang, F., Koonin, E. V., and van der Oost, J. (2016) Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems Science 353, aad5147 10.1126/science.aad5147
    • (2016) Science , vol.353 , pp. aad5147
    • Mohanraju, P.1    Makarova, K.S.2    Zetsche, B.3    Zhang, F.4    Koonin, E.V.5    Van Der Oost, J.6
  • 22
    • 84957706239 scopus 로고    scopus 로고
    • Functional Analysis of Bacteriophage Immunity through a Type I-E CRISPR-Cas System in Vibrio cholerae and Its Application in Bacteriophage Genome Engineering
    • Box, A. M., McGuffie, M. J., O'Hara, B. J., and Seed, K. D. (2016) Functional Analysis of Bacteriophage Immunity through a Type I-E CRISPR-Cas System in Vibrio cholerae and Its Application in Bacteriophage Genome Engineering J. Bacteriol. 198, 578-590 10.1128/JB.00747-15
    • (2016) J. Bacteriol. , vol.198 , pp. 578-590
    • Box, A.M.1    McGuffie, M.J.2    O'Hara, B.J.3    Seed, K.D.4
  • 23
    • 84894476108 scopus 로고    scopus 로고
    • Efficient engineering of a bacteriophage genome using the type I-E CRISPR-Cas system
    • Kiro, R., Shitrit, D., and Qimron, U. (2014) Efficient engineering of a bacteriophage genome using the type I-E CRISPR-Cas system RNA Biol. 11, 42-44 10.4161/rna.27766
    • (2014) RNA Biol. , vol.11 , pp. 42-44
    • Kiro, R.1    Shitrit, D.2    Qimron, U.3
  • 24
    • 85020703557 scopus 로고    scopus 로고
    • Genome Engineering of Virulent Lactococcal Phages Using CRISPR-Cas9
    • Lemay, M. L., Tremblay, D. M., and Moineau, S. (2017) Genome Engineering of Virulent Lactococcal Phages Using CRISPR-Cas9 ACS Synth. Biol. 10.1021/acssynbio.6b00388
    • (2017) ACS Synth. Biol.
    • Lemay, M.L.1    Tremblay, D.M.2    Moineau, S.3
  • 25
    • 84906216646 scopus 로고    scopus 로고
    • CRISPR-Cas: An efficient tool for genome engineering of virulent bacteriophages
    • Martel, B. and Moineau, S. (2014) CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophages Nucleic Acids Res. 42, 9504-9513 10.1093/nar/gku628
    • (2014) Nucleic Acids Res. , vol.42 , pp. 9504-9513
    • Martel, B.1    Moineau, S.2
  • 28
    • 84902338476 scopus 로고    scopus 로고
    • CRISPR/Cas9-mediated phage resistance is not impeded by the DNA modifications of phage T4
    • Yaung, S. J., Esvelt, K. M., and Church, G. M. (2014) CRISPR/Cas9-mediated phage resistance is not impeded by the DNA modifications of phage T4 PLoS One 9, e98811 10.1371/journal.pone.0098811
    • (2014) PLoS One , vol.9 , pp. e98811
    • Yaung, S.J.1    Esvelt, K.M.2    Church, G.M.3
  • 29
    • 84887104139 scopus 로고    scopus 로고
    • Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
    • Esvelt, K. M., Mali, P., Braff, J. L., Moosburner, M., Yaung, S. J., and Church, G. M. (2013) Orthogonal Cas9 proteins for RNA-guided gene regulation and editing Nat. Methods 10, 1116-1121 10.1038/nmeth.2681
    • (2013) Nat. Methods , vol.10 , pp. 1116-1121
    • Esvelt, K.M.1    Mali, P.2    Braff, J.L.3    Moosburner, M.4    Yaung, S.J.5    Church, G.M.6
  • 30
    • 0018701477 scopus 로고
    • High-frequency generalised transduction by bacteriophage T4
    • Wilson, G. G., Young, K. Y., Edlin, G. J., and Konigsberg, W. (1979) High-frequency generalised transduction by bacteriophage T4 Nature 280, 80-82 10.1038/280080a0
    • (1979) Nature , vol.280 , pp. 80-82
    • Wilson, G.G.1    Young, K.Y.2    Edlin, G.J.3    Konigsberg, W.4
  • 31
    • 0027418008 scopus 로고
    • DNA determinants of restriction. Bacteriophage T4 endonuclease II-dependent cleavage of plasmid DNA in vivo
    • Carlson, K., Krabbe, M., Nystrom, A. C., and Kosturko, L. D. (1993) DNA determinants of restriction. Bacteriophage T4 endonuclease II-dependent cleavage of plasmid DNA in vivo J. Biol. Chem. 268, 8908-8918
    • (1993) J. Biol. Chem. , vol.268 , pp. 8908-8918
    • Carlson, K.1    Krabbe, M.2    Nystrom, A.C.3    Kosturko, L.D.4
  • 32
    • 0036790939 scopus 로고    scopus 로고
    • Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains
    • Ho, C. K. and Shuman, S. (2002) Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains Proc. Natl. Acad. Sci. U. S. A. 99, 12709-12714 10.1073/pnas.192184699
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 12709-12714
    • Ho, C.K.1    Shuman, S.2
  • 33
    • 0021253053 scopus 로고
    • Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase- and RNA ligase-deficient mutants of bacteriophage T4
    • Jabbar, M. A. and Snyder, L. (1984) Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase- and RNA ligase-deficient mutants of bacteriophage T4 J. Virol 51, 522-529
    • (1984) J. Virol , vol.51 , pp. 522-529
    • Jabbar, M.A.1    Snyder, L.2
  • 34
    • 0024445094 scopus 로고
    • In vitro reconstitution of anticodon nuclease from components encoded by phage T4 and Escherichia coli CTr5X
    • Amitsur, M., Morad, I., and Kaufmann, G. (1989) In vitro reconstitution of anticodon nuclease from components encoded by phage T4 and Escherichia coli CTr5X EMBO J. 8, 2411-2415
    • (1989) EMBO J. , vol.8 , pp. 2411-2415
    • Amitsur, M.1    Morad, I.2    Kaufmann, G.3
  • 35
    • 85000843928 scopus 로고    scopus 로고
    • Molecular assembly and structure of the bacteriophage T4 tail
    • Arisaka, F., Yap, M. L., Kanamaru, S., and Rossmann, M. G. (2016) Molecular assembly and structure of the bacteriophage T4 tail Biophys. Rev. 8, 385-396 10.1007/s12551-016-0230-x
    • (2016) Biophys. Rev. , vol.8 , pp. 385-396
    • Arisaka, F.1    Yap, M.L.2    Kanamaru, S.3    Rossmann, M.G.4
  • 36
    • 84858226068 scopus 로고    scopus 로고
    • Structure, assembly, and DNA packaging of the bacteriophage T4 head
    • Black, L. W. and Rao, V. B. (2012) Structure, assembly, and DNA packaging of the bacteriophage T4 head Adv. Virus Res. 82, 119-153 10.1016/B978-0-12-394621-8.00018-2
    • (2012) Adv. Virus Res. , vol.82 , pp. 119-153
    • Black, L.W.1    Rao, V.B.2
  • 37
    • 57649226492 scopus 로고    scopus 로고
    • The bacteriophage DNA packaging motor
    • Rao, V. B. and Feiss, M. (2008) The bacteriophage DNA packaging motor Annu. Rev. Genet. 42, 647-681 10.1146/annurev.genet.42.110807.091545
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 647-681
    • Rao, V.B.1    Feiss, M.2
  • 38
    • 57649228017 scopus 로고    scopus 로고
    • The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces
    • Sun, S., Kondabagil, K., Draper, B., Alam, T. I., Bowman, V. D., Zhang, Z., Hegde, S., Fokine, A., Rossmann, M. G., and Rao, V. B. (2008) The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces Cell 135, 1251-1262 10.1016/j.cell.2008.11.015
    • (2008) Cell , vol.135 , pp. 1251-1262
    • Sun, S.1    Kondabagil, K.2    Draper, B.3    Alam, T.I.4    Bowman, V.D.5    Zhang, Z.6    Hegde, S.7    Fokine, A.8    Rossmann, M.G.9    Rao, V.B.10
  • 40
    • 84919828897 scopus 로고    scopus 로고
    • Structure and function of bacteriophage T4
    • Yap, M. L. and Rossmann, M. G. (2014) Structure and function of bacteriophage T4 Future Microbiol. 9, 1319-1327 10.2217/fmb.14.91
    • (2014) Future Microbiol. , vol.9 , pp. 1319-1327
    • Yap, M.L.1    Rossmann, M.G.2
  • 42
    • 0035902485 scopus 로고    scopus 로고
    • Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer
    • Mosig, G., Gewin, J., Luder, A., Colowick, N., and Vo, D. (2001) Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer Proc. Natl. Acad. Sci. U. S. A. 98, 8306-8311 10.1073/pnas.131007398
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 8306-8311
    • Mosig, G.1    Gewin, J.2    Luder, A.3    Colowick, N.4    Vo, D.5
  • 44
    • 0023758318 scopus 로고
    • The bacteriophage T4 insertion/substitution vector system. A method for introducing site-specific mutations into the virus chromosome
    • Selick, H. E., Kreuzer, K. N., and Alberts, B. M. (1988) The bacteriophage T4 insertion/substitution vector system. A method for introducing site-specific mutations into the virus chromosome J. Biol. Chem. 263, 11336-11347
    • (1988) J. Biol. Chem. , vol.263 , pp. 11336-11347
    • Selick, H.E.1    Kreuzer, K.N.2    Alberts, B.M.3
  • 45
    • 0020049656 scopus 로고
    • Genetic and physiological studies of the role of the RNA ligase of bacteriophage T4
    • Runnels, J. M., Soltis, D., Hey, T., and Snyder, L. (1982) Genetic and physiological studies of the role of the RNA ligase of bacteriophage T4 J. Mol. Biol. 154, 273-286 10.1016/0022-2836(82)90064-X
    • (1982) J. Mol. Biol. , vol.154 , pp. 273-286
    • Runnels, J.M.1    Soltis, D.2    Hey, T.3    Snyder, L.4
  • 46
    • 85017185729 scopus 로고    scopus 로고
    • Bacteriophage T4 as a Nanoparticle Platform to Display and Deliver Pathogen Antigens: Construction of an Effective Anthrax Vaccine
    • Tao, P., Li, Q., Shivachandra, S. B., and Rao, V. B. (2017) Bacteriophage T4 as a Nanoparticle Platform to Display and Deliver Pathogen Antigens: Construction of an Effective Anthrax Vaccine Methods Mol. Biol. 1581, 255-267 10.1007/978-1-4939-6869-5-15
    • (2017) Methods Mol. Biol. , vol.1581 , pp. 255-267
    • Tao, P.1    Li, Q.2    Shivachandra, S.B.3    Rao, V.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.