-
1
-
-
84878641167
-
Metabolic engineering of yeast for production of fuels and chemicals
-
Nielsen, J.; Larsson, C.; van Maris, A.; Pronk, J. Metabolic engineering of yeast for production of fuels and chemicals. Curr. Opin. Biotechnol. 2013, 24 (3), 398-404, 10.1016/j.copbio.2013.03.023
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, Issue.3
, pp. 398-404
-
-
Nielsen, J.1
Larsson, C.2
Van Maris, A.3
Pronk, J.4
-
2
-
-
84865142847
-
Microbial engineering for the production of advanced biofuels
-
Peralta-Yahya, P. P.; Zhang, F.; del Cardayre, S. B.; Keasling, J. D. Microbial engineering for the production of advanced biofuels. Nature 2012, 488 (7411), 320-8, 10.1038/nature11478
-
(2012)
Nature
, vol.488
, Issue.7411
, pp. 320-328
-
-
Peralta-Yahya, P.P.1
Zhang, F.2
Del Cardayre, S.B.3
Keasling, J.D.4
-
3
-
-
84884135568
-
Economic and environmental impacts of microbial biodiesel
-
Caspeta, L.; Nielsen, J. Economic and environmental impacts of microbial biodiesel. Nat. Biotechnol. 2013, 31 (9), 789-93, 10.1038/nbt.2683
-
(2013)
Nat. Biotechnol.
, vol.31
, Issue.9
, pp. 789-793
-
-
Caspeta, L.1
Nielsen, J.2
-
4
-
-
76649111376
-
Higherature fermentation: How can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?
-
Abdel-Banat, B. M.; Hoshida, H.; Ano, A.; Nonklang, S.; Akada, R. Higherature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?. Appl. Microbiol. Biotechnol. 2010, 85 (4), 861-7, 10.1007/s00253-009-2248-5
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.85
, Issue.4
, pp. 861-867
-
-
Abdel-Banat, B.M.1
Hoshida, H.2
Ano, A.3
Nonklang, S.4
Akada, R.5
-
5
-
-
67649436135
-
Yield-determining factors in high-solids enzymatic hydrolysis of lignocellulose
-
Kristensen, J. B.; Felby, C.; Jorgensen, H. Yield-determining factors in high-solids enzymatic hydrolysis of lignocellulose. Biotechnol. Biofuels 2009, 2 (1), 11, 10.1186/1754-6834-2-11
-
(2009)
Biotechnol. Biofuels
, vol.2
, Issue.1
, pp. 11
-
-
Kristensen, J.B.1
Felby, C.2
Jorgensen, H.3
-
6
-
-
84874338727
-
Enhanced bio-ethanol production from cellulosic materials by semi-simultaneous saccharification and fermentation using high temperature resistant Saccharomyces cerevisiae TJ14
-
Shahsavarani, H.; Hasegawa, D.; Yokota, D.; Sugiyama, M.; Kaneko, Y.; Boonchird, C.; Harashima, S. Enhanced bio-ethanol production from cellulosic materials by semi-simultaneous saccharification and fermentation using high temperature resistant Saccharomyces cerevisiae TJ14. J. Biosci Bioeng 2013, 115 (1), 20-3, 10.1016/j.jbiosc.2012.07.018
-
(2013)
J. Biosci Bioeng
, vol.115
, Issue.1
, pp. 20-23
-
-
Shahsavarani, H.1
Hasegawa, D.2
Yokota, D.3
Sugiyama, M.4
Kaneko, Y.5
Boonchird, C.6
Harashima, S.7
-
7
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch, A. P.; Spellman, P. T.; Kao, C. M.; Carmel-Harel, O.; Eisen, M. B.; Storz, G.; Botstein, D.; Brown, P. O. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 2000, 11 (12), 4241-57, 10.1091/mbc.11.12.4241
-
(2000)
Mol. Biol. Cell
, vol.11
, Issue.12
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
8
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton, H. C.; Ren, B.; Koh, S. S.; Harbison, C. T.; Kanin, E.; Jennings, E. G.; Lee, T. I.; True, H. L.; Lander, E. S.; Young, R. A. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 2001, 12 (2), 323-37, 10.1091/mbc.12.2.323
-
(2001)
Mol. Biol. Cell
, vol.12
, Issue.2
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
9
-
-
77954196304
-
Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress
-
Strassburg, K.; Walther, D.; Takahashi, H.; Kanaya, S.; Kopka, J. Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress. OMICS 2010, 14 (3), 249-59, 10.1089/omi.2009.0107
-
(2010)
OMICS
, vol.14
, Issue.3
, pp. 249-259
-
-
Strassburg, K.1
Walther, D.2
Takahashi, H.3
Kanaya, S.4
Kopka, J.5
-
10
-
-
84855549488
-
System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap
-
Nagaraj, N.; Kulak, N. A.; Cox, J.; Neuhauser, N.; Mayr, K.; Hoerning, O.; Vorm, O.; Mann, M. System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap. Mol. Cell. Proteomics 2012, 11 (3), M111013722, 10.1074/mcp.M111.013722
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.3
, pp. M111013722
-
-
Nagaraj, N.1
Kulak, N.A.2
Cox, J.3
Neuhauser, N.4
Mayr, K.5
Hoerning, O.6
Vorm, O.7
Mann, M.8
-
11
-
-
84907483760
-
Biofuels. Altered sterol composition renders yeast thermotolerant
-
Caspeta, L.; Chen, Y.; Ghiaci, P.; Feizi, A.; Buskov, S.; Hallstrom, B. M.; Petranovic, D.; Nielsen, J. Biofuels. Altered sterol composition renders yeast thermotolerant. Science 2014, 346 (6205), 75-8, 10.1126/science.1258137
-
(2014)
Science
, vol.346
, Issue.6205
, pp. 75-78
-
-
Caspeta, L.1
Chen, Y.2
Ghiaci, P.3
Feizi, A.4
Buskov, S.5
Hallstrom, B.M.6
Petranovic, D.7
Nielsen, J.8
-
12
-
-
84936746285
-
Understanding the Mechanism of Thermotolerance Distinct from Heat Shock Response Through Proteomic Analysis of Industrial Strains of Saccharomyces cerevisiae
-
Shui, W.; Xiong, Y.; Xiao, W.; Qi, X.; Zhang, Y.; Lin, Y.; Guo, Y.; Zhang, Z.; Wang, Q.; Ma, Y. Understanding the Mechanism of Thermotolerance Distinct From Heat Shock Response Through Proteomic Analysis of Industrial Strains of Saccharomyces cerevisiae. Mol. Cell. Proteomics 2015, 14 (7), 1885-97, 10.1074/mcp.M114.045781
-
(2015)
Mol. Cell. Proteomics
, vol.14
, Issue.7
, pp. 1885-1897
-
-
Shui, W.1
Xiong, Y.2
Xiao, W.3
Qi, X.4
Zhang, Y.5
Lin, Y.6
Guo, Y.7
Zhang, Z.8
Wang, Q.9
Ma, Y.10
-
13
-
-
84988517517
-
Mass-spectrometric exploration of proteome structure and function
-
Aebersold, R.; Mann, M. Mass-spectrometric exploration of proteome structure and function. Nature 2016, 537 (7620), 347-55, 10.1038/nature19949
-
(2016)
Nature
, vol.537
, Issue.7620
, pp. 347-355
-
-
Aebersold, R.1
Mann, M.2
-
14
-
-
84923778419
-
Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry
-
Selevsek, N.; Chang, C. Y.; Gillet, L. C.; Navarro, P.; Bernhardt, O. M.; Reiter, L.; Cheng, L. Y.; Vitek, O.; Aebersold, R. Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry. Mol. Cell. Proteomics 2015, 14 (3), 739-49, 10.1074/mcp.M113.035550
-
(2015)
Mol. Cell. Proteomics
, vol.14
, Issue.3
, pp. 739-749
-
-
Selevsek, N.1
Chang, C.Y.2
Gillet, L.C.3
Navarro, P.4
Bernhardt, O.M.5
Reiter, L.6
Cheng, L.Y.7
Vitek, O.8
Aebersold, R.9
-
15
-
-
84861860481
-
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: A new concept for consistent and accurate proteome analysis
-
Gillet, L. C.; Navarro, P.; Tate, S.; Rost, H.; Selevsek, N.; Reiter, L.; Bonner, R.; Aebersold, R. Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol. Cell. Proteomics 2012, 11 (6), O111016717, 10.1074/mcp.O111.016717
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.6
, pp. O111016717
-
-
Gillet, L.C.1
Navarro, P.2
Tate, S.3
Rost, H.4
Selevsek, N.5
Reiter, L.6
Bonner, R.7
Aebersold, R.8
-
16
-
-
84888858053
-
Quantifying protein interaction dynamics by SWATH mass spectrometry: Application to the 14-3-3 system
-
Collins, B. C.; Gillet, L. C.; Rosenberger, G.; Rost, H. L.; Vichalkovski, A.; Gstaiger, M.; Aebersold, R. Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system. Nat. Methods 2013, 10 (12), 1246-53, 10.1038/nmeth.2703
-
(2013)
Nat. Methods
, vol.10
, Issue.12
, pp. 1246-1253
-
-
Collins, B.C.1
Gillet, L.C.2
Rosenberger, G.3
Rost, H.L.4
Vichalkovski, A.5
Gstaiger, M.6
Aebersold, R.7
-
17
-
-
84888871108
-
Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition
-
Lambert, J. P.; Ivosev, G.; Couzens, A. L.; Larsen, B.; Taipale, M.; Lin, Z. Y.; Zhong, Q.; Lindquist, S.; Vidal, M.; Aebersold, R.; Pawson, T.; Bonner, R.; Tate, S.; Gingras, A. C. Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition. Nat. Methods 2013, 10 (12), 1239-45, 10.1038/nmeth.2702
-
(2013)
Nat. Methods
, vol.10
, Issue.12
, pp. 1239-1245
-
-
Lambert, J.P.1
Ivosev, G.2
Couzens, A.L.3
Larsen, B.4
Taipale, M.5
Lin, Z.Y.6
Zhong, Q.7
Lindquist, S.8
Vidal, M.9
Aebersold, R.10
Pawson, T.11
Bonner, R.12
Tate, S.13
Gingras, A.C.14
-
18
-
-
84929658087
-
Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues
-
Bruderer, R.; Bernhardt, O. M.; Gandhi, T.; Miladinovic, S. M.; Cheng, L. Y.; Messner, S.; Ehrenberger, T.; Zanotelli, V.; Butscheid, Y.; Escher, C.; Vitek, O.; Rinner, O.; Reiter, L. Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues. Mol. Cell. Proteomics 2015, 14 (5), 1400-10, 10.1074/mcp.M114.044305
-
(2015)
Mol. Cell. Proteomics
, vol.14
, Issue.5
, pp. 1400-1410
-
-
Bruderer, R.1
Bernhardt, O.M.2
Gandhi, T.3
Miladinovic, S.M.4
Cheng, L.Y.5
Messner, S.6
Ehrenberger, T.7
Zanotelli, V.8
Butscheid, Y.9
Escher, C.10
Vitek, O.11
Rinner, O.12
Reiter, L.13
-
19
-
-
84939991970
-
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
-
Guo, T.; Kouvonen, P.; Koh, C. C.; Gillet, L. C.; Wolski, W. E.; Rost, H. L.; Rosenberger, G.; Collins, B. C.; Blum, L. C.; Gillessen, S.; Joerger, M.; Jochum, W.; Aebersold, R. Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps. Nat. Med. 2015, 21 (4), 407-13, 10.1038/nm.3807
-
(2015)
Nat. Med.
, vol.21
, Issue.4
, pp. 407-413
-
-
Guo, T.1
Kouvonen, P.2
Koh, C.C.3
Gillet, L.C.4
Wolski, W.E.5
Rost, H.L.6
Rosenberger, G.7
Collins, B.C.8
Blum, L.C.9
Gillessen, S.10
Joerger, M.11
Jochum, W.12
Aebersold, R.13
-
20
-
-
84923645756
-
Quantitative variability of 342 plasma proteins in a human twin population
-
Liu, Y.; Buil, A.; Collins, B. C.; Gillet, L. C.; Blum, L. C.; Cheng, L. Y.; Vitek, O.; Mouritsen, J.; Lachance, G.; Spector, T. D.; Dermitzakis, E. T.; Aebersold, R. Quantitative variability of 342 plasma proteins in a human twin population. Mol. Syst. Biol. 2015, 11 (1), 786, 10.15252/msb.20145728
-
(2015)
Mol. Syst. Biol.
, vol.11
, Issue.1
, pp. 786
-
-
Liu, Y.1
Buil, A.2
Collins, B.C.3
Gillet, L.C.4
Blum, L.C.5
Cheng, L.Y.6
Vitek, O.7
Mouritsen, J.8
Lachance, G.9
Spector, T.D.10
Dermitzakis, E.T.11
Aebersold, R.12
-
21
-
-
84898665956
-
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
-
Rost, H. L.; Rosenberger, G.; Navarro, P.; Gillet, L.; Miladinovic, S. M.; Schubert, O. T.; Wolski, W.; Collins, B. C.; Malmstrom, J.; Malmstrom, L.; Aebersold, R. OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data. Nat. Biotechnol. 2014, 32 (3), 219-23, 10.1038/nbt.2841
-
(2014)
Nat. Biotechnol.
, vol.32
, Issue.3
, pp. 219-223
-
-
Rost, H.L.1
Rosenberger, G.2
Navarro, P.3
Gillet, L.4
Miladinovic, S.M.5
Schubert, O.T.6
Wolski, W.7
Collins, B.C.8
Malmstrom, J.9
Malmstrom, L.10
Aebersold, R.11
-
22
-
-
84937426960
-
Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis
-
Schubert, O. T.; Ludwig, C.; Kogadeeva, M.; Zimmermann, M.; Rosenberger, G.; Gengenbacher, M.; Gillet, L. C.; Collins, B. C.; Rost, H. L.; Kaufmann, S. H.; Sauer, U.; Aebersold, R. Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis. Cell Host Microbe 2015, 18 (1), 96-108, 10.1016/j.chom.2015.06.001
-
(2015)
Cell Host Microbe
, vol.18
, Issue.1
, pp. 96-108
-
-
Schubert, O.T.1
Ludwig, C.2
Kogadeeva, M.3
Zimmermann, M.4
Rosenberger, G.5
Gengenbacher, M.6
Gillet, L.C.7
Collins, B.C.8
Rost, H.L.9
Kaufmann, S.H.10
Sauer, U.11
Aebersold, R.12
-
23
-
-
84954468136
-
Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics
-
Malmstrom, E.; Kilsgard, O.; Hauri, S.; Smeds, E.; Herwald, H.; Malmstrom, L.; Malmstrom, J. Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics. Nat. Commun. 2016, 7, 10261, 10.1038/ncomms10261
-
(2016)
Nat. Commun.
, vol.7
, pp. 10261
-
-
Malmstrom, E.1
Kilsgard, O.2
Hauri, S.3
Smeds, E.4
Herwald, H.5
Malmstrom, L.6
Malmstrom, J.7
-
24
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L.; Huang, Y. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; Purkayastha, S.; Juhasz, P.; Martin, S.; Bartlet-Jones, M.; He, F.; Jacobson, A.; Pappin, D. J. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 2004, 3 (12), 1154-69, 10.1074/mcp.M400129-MCP200
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
25
-
-
31544434870
-
Distinct roles for de novo versus hydrolytic pathways of sphingolipid biosynthesis in Saccharomyces cerevisiae
-
Cowart, L. A.; Okamoto, Y.; Lu, X.; Hannun, Y. A. Distinct roles for de novo versus hydrolytic pathways of sphingolipid biosynthesis in Saccharomyces cerevisiae. Biochem. J. 2006, 393 (3), 733-40, 10.1042/BJ20050643
-
(2006)
Biochem. J.
, vol.393
, Issue.3
, pp. 733-740
-
-
Cowart, L.A.1
Okamoto, Y.2
Lu, X.3
Hannun, Y.A.4
-
26
-
-
84859880168
-
Protein significance analysis in selected reaction monitoring (SRM) measurements
-
Chang, C. Y.; Picotti, P.; Huttenhain, R.; Heinzelmann-Schwarz, V.; Jovanovic, M.; Aebersold, R.; Vitek, O. Protein significance analysis in selected reaction monitoring (SRM) measurements. Mol. Cell. Proteomics 2012, 11 (4), M111014662, 10.1074/mcp.M111.014662
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.4
, pp. M111014662
-
-
Chang, C.Y.1
Picotti, P.2
Huttenhain, R.3
Heinzelmann-Schwarz, V.4
Jovanovic, M.5
Aebersold, R.6
Vitek, O.7
-
27
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26 (12), 1367-72, 10.1038/nbt.1511
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.12
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
28
-
-
84907033616
-
MSstats: An R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
-
Choi, M.; Chang, C. Y.; Clough, T.; Broudy, D.; Killeen, T.; MacLean, B.; Vitek, O. MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments. Bioinformatics 2014, 30 (17), 2524-6, 10.1093/bioinformatics/btu305
-
(2014)
Bioinformatics
, vol.30
, Issue.17
, pp. 2524-2526
-
-
Choi, M.1
Chang, C.Y.2
Clough, T.3
Broudy, D.4
Killeen, T.5
MacLean, B.6
Vitek, O.7
-
29
-
-
84891806965
-
The YEASTRACT database: An upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
-
Teixeira, M. C.; Monteiro, P. T.; Guerreiro, J. F.; Goncalves, J. P.; Mira, N. P.; dos Santos, S. C.; Cabrito, T. R.; Palma, M.; Costa, C.; Francisco, A. P.; Madeira, S. C.; Oliveira, A. L.; Freitas, A. T.; Sa-Correia, I. The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 2014, 42, D161-6, 10.1093/nar/gkt1015
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D161-D166
-
-
Teixeira, M.C.1
Monteiro, P.T.2
Guerreiro, J.F.3
Goncalves, J.P.4
Mira, N.P.5
Dos Santos, S.C.6
Cabrito, T.R.7
Palma, M.8
Costa, C.9
Francisco, A.P.10
Madeira, S.C.11
Oliveira, A.L.12
Freitas, A.T.13
Sa-Correia, I.14
-
30
-
-
0029994841
-
A new efficient gene disruption cassette for repeated use in budding yeast
-
Guldener, U.; Heck, S.; Fielder, T.; Beinhauer, J.; Hegemann, J. H. A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res. 1996, 24 (13), 2519-2524, 10.1093/nar/24.13.2519
-
(1996)
Nucleic Acids Res.
, vol.24
, Issue.13
, pp. 2519-2524
-
-
Guldener, U.1
Heck, S.2
Fielder, T.3
Beinhauer, J.4
Hegemann, J.H.5
-
31
-
-
0026562884
-
Improved method for high efficiency transformation of intact yeast cells
-
Gietz, D., St; Jean, A.; Woods, R. A.; Schiestl, R. H. Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 1992, 20 (6), 1425, 10.1093/nar/20.6.1425
-
(1992)
Nucleic Acids Res.
, vol.20
, Issue.6
, pp. 1425
-
-
St, G.D.1
Jean, A.2
Woods, R.A.3
Schiestl, R.H.4
-
32
-
-
84908499436
-
Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae
-
Lin, Y.; Chomvong, K.; Acosta-Sampson, L.; Estrela, R.; Galazka, J. M.; Kim, S. R.; Jin, Y. S.; Cate, J. H. Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae. Biotechnol. Biofuels 2014, 7 (1), 126, 10.1186/PREACCEPT-1378335836125249
-
(2014)
Biotechnol. Biofuels
, vol.7
, Issue.1
, pp. 126
-
-
Lin, Y.1
Chomvong, K.2
Acosta-Sampson, L.3
Estrela, R.4
Galazka, J.M.5
Kim, S.R.6
Jin, Y.S.7
Cate, J.H.8
-
33
-
-
84859586432
-
The response to heat shock and oxidative stress in Saccharomyces cerevisiae
-
Morano, K. A.; Grant, C. M.; Moye-Rowley, W. S. The response to heat shock and oxidative stress in Saccharomyces cerevisiae. Genetics 2012, 190 (4), 1157-95, 10.1534/genetics.111.128033
-
(2012)
Genetics
, vol.190
, Issue.4
, pp. 1157-1195
-
-
Morano, K.A.1
Grant, C.M.2
Moye-Rowley, W.S.3
-
34
-
-
84977876620
-
Advances in mechanisms and modifications for rendering yeast thermotolerance
-
Gao, L.; Liu, Y.; Sun, H.; Li, C.; Zhao, Z.; Liu, G. Advances in mechanisms and modifications for rendering yeast thermotolerance. J. Biosci Bioeng 2016, 121 (6), 599-606, 10.1016/j.jbiosc.2015.11.002
-
(2016)
J. Biosci Bioeng
, vol.121
, Issue.6
, pp. 599-606
-
-
Gao, L.1
Liu, Y.2
Sun, H.3
Li, C.4
Zhao, Z.5
Liu, G.6
-
35
-
-
84994841779
-
A multicenter study benchmarks software tools for label-free proteome quantification
-
Navarro, P.; Kuharev, J.; Gillet, L. C.; Bernhardt, O. M.; MacLean, B.; Rost, H. L.; Tate, S. A.; Tsou, C. C.; Reiter, L.; Distler, U.; Rosenberger, G.; Perez-Riverol, Y.; Nesvizhskii, A. I.; Aebersold, R.; Tenzer, S. A multicenter study benchmarks software tools for label-free proteome quantification. Nat. Biotechnol. 2016, 34 (11), 1130-1136, 10.1038/nbt.3685
-
(2016)
Nat. Biotechnol.
, vol.34
, Issue.11
, pp. 1130-1136
-
-
Navarro, P.1
Kuharev, J.2
Gillet, L.C.3
Bernhardt, O.M.4
MacLean, B.5
Rost, H.L.6
Tate, S.A.7
Tsou, C.C.8
Reiter, L.9
Distler, U.10
Rosenberger, G.11
Perez-Riverol, Y.12
Nesvizhskii, A.I.13
Aebersold, R.14
Tenzer, S.15
-
36
-
-
84942944020
-
The Use of Variable Q1 Isolation Windows Improves Selectivity in LC-SWATH-MS Acquisition
-
Zhang, Y.; Bilbao, A.; Bruderer, T.; Luban, J.; Strambio-De-Castillia, C.; Lisacek, F.; Hopfgartner, G.; Varesio, E. The Use of Variable Q1 Isolation Windows Improves Selectivity in LC-SWATH-MS Acquisition. J. Proteome Res. 2015, 14 (10), 4359-71, 10.1021/acs.jproteome.5b00543
-
(2015)
J. Proteome Res.
, vol.14
, Issue.10
, pp. 4359-4371
-
-
Zhang, Y.1
Bilbao, A.2
Bruderer, T.3
Luban, J.4
Strambio-De-Castillia, C.5
Lisacek, F.6
Hopfgartner, G.7
Varesio, E.8
-
37
-
-
84944256408
-
Label-free Quantitative Analysis of Changes in Broiler Liver Proteins under Heat Stress using SWATH-MS Technology
-
Tang, X.; Meng, Q.; Gao, J.; Zhang, S.; Zhang, H.; Zhang, M. Label-free Quantitative Analysis of Changes in Broiler Liver Proteins under Heat Stress using SWATH-MS Technology. Sci. Rep. 2015, 5, 15119, 10.1038/srep15119
-
(2015)
Sci. Rep.
, vol.5
, pp. 15119
-
-
Tang, X.1
Meng, Q.2
Gao, J.3
Zhang, S.4
Zhang, H.5
Zhang, M.6
-
38
-
-
70449412362
-
ITRAQ underestimation in simple and complex mixtures: ″the good, the bad and the ugly″
-
Ow, S. Y.; Salim, M.; Noirel, J.; Evans, C.; Rehman, I.; Wright, P. C. iTRAQ underestimation in simple and complex mixtures: ″the good, the bad and the ugly″. J. Proteome Res. 2009, 8 (11), 5347-55, 10.1021/pr900634c
-
(2009)
J. Proteome Res.
, vol.8
, Issue.11
, pp. 5347-5355
-
-
Ow, S.Y.1
Salim, M.2
Noirel, J.3
Evans, C.4
Rehman, I.5
Wright, P.C.6
-
39
-
-
67349185295
-
Sterols and membrane dynamics
-
Dufourc, E. J. Sterols and membrane dynamics. J. Chem. Biol. 2008, 1 (1-4), 63-77, 10.1007/s12154-008-0010-6
-
(2008)
J. Chem. Biol.
, vol.1
, Issue.14
, pp. 63-77
-
-
Dufourc, E.J.1
-
40
-
-
84893775615
-
Cellular redox homeostasis, reactive oxygen species and replicative ageing in Saccharomyces cerevisiae
-
Ayer, A.; Gourlay, C. W.; Dawes, I. W. Cellular redox homeostasis, reactive oxygen species and replicative ageing in Saccharomyces cerevisiae. FEMS Yeast Res. 2014, 14 (1), 60-72, 10.1111/1567-1364.12114
-
(2014)
FEMS Yeast Res.
, vol.14
, Issue.1
, pp. 60-72
-
-
Ayer, A.1
Gourlay, C.W.2
Dawes, I.W.3
-
41
-
-
81255210794
-
Transcriptional regulation in Saccharomyces cerevisiae: Transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators
-
Hahn, S.; Young, E. T. Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. Genetics 2011, 189 (3), 705-36, 10.1534/genetics.111.127019
-
(2011)
Genetics
, vol.189
, Issue.3
, pp. 705-736
-
-
Hahn, S.1
Young, E.T.2
-
42
-
-
84890830350
-
Saccharomyces cerevisiae genes involved in survival of heat shock
-
Jarolim, S.; Ayer, A.; Pillay, B.; Gee, A. C.; Phrakaysone, A.; Perrone, G. G.; Breitenbach, M.; Dawes, I. W. Saccharomyces cerevisiae genes involved in survival of heat shock. G3: Genes, Genomes, Genet. 2013, 3 (12), 2321-33, 10.1534/g3.113.007971
-
(2013)
G3: Genes, Genomes, Genet.
, vol.3
, Issue.12
, pp. 2321-2333
-
-
Jarolim, S.1
Ayer, A.2
Pillay, B.3
Gee, A.C.4
Phrakaysone, A.5
Perrone, G.G.6
Breitenbach, M.7
Dawes, I.W.8
-
43
-
-
1842478233
-
Regulation of phospholipid synthesis in the yeast cki1Delta eki1Delta mutant defective in the Kennedy pathway. The Cho1-encoded phosphatidylserine synthase is regulated by mRNA stability
-
Choi, H. S.; Sreenivas, A.; Han, G. S.; Carman, G. M. Regulation of phospholipid synthesis in the yeast cki1Delta eki1Delta mutant defective in the Kennedy pathway. The Cho1-encoded phosphatidylserine synthase is regulated by mRNA stability. J. Biol. Chem. 2004, 279 (13), 12081-7, 10.1074/jbc.M400297200
-
(2004)
J. Biol. Chem.
, vol.279
, Issue.13
, pp. 12081-12087
-
-
Choi, H.S.1
Sreenivas, A.2
Han, G.S.3
Carman, G.M.4
-
44
-
-
71249083129
-
Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae
-
Ding, J.; Huang, X.; Zhang, L.; Zhao, N.; Yang, D.; Zhang, K. Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 2009, 85 (2), 253-63, 10.1007/s00253-009-2223-1
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.85
, Issue.2
, pp. 253-263
-
-
Ding, J.1
Huang, X.2
Zhang, L.3
Zhao, N.4
Yang, D.5
Zhang, K.6
-
45
-
-
79954919688
-
Low ergosterol content in yeast adh1 mutant enhances chitin maldistribution and sensitivity to paraquat-induced oxidative stress
-
Marisco, G.; Saito, S. T.; Ganda, I. S.; Brendel, M.; Pungartnik, C. Low ergosterol content in yeast adh1 mutant enhances chitin maldistribution and sensitivity to paraquat-induced oxidative stress. Yeast 2011, 28 (5), 363-73, 10.1002/yea.1844
-
(2011)
Yeast
, vol.28
, Issue.5
, pp. 363-373
-
-
Marisco, G.1
Saito, S.T.2
Ganda, I.S.3
Brendel, M.4
Pungartnik, C.5
-
46
-
-
84867155052
-
Rho signaling participates in membrane fluidity homeostasis
-
Lockshon, D.; Olsen, C. P.; Brett, C. L.; Chertov, A.; Merz, A. J.; Lorenz, D. A.; Van Gilst, M. R.; Kennedy, B. K. Rho signaling participates in membrane fluidity homeostasis. PLoS One 2012, 7 (10), e45049, 10.1371/journal.pone.0045049
-
(2012)
PLoS One
, vol.7
, Issue.10
, pp. e45049
-
-
Lockshon, D.1
Olsen, C.P.2
Brett, C.L.3
Chertov, A.4
Merz, A.J.5
Lorenz, D.A.6
Van Gilst, M.R.7
Kennedy, B.K.8
-
47
-
-
60549088898
-
Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3
-
Westholm, J. O.; Nordberg, N.; Muren, E.; Ameur, A.; Komorowski, J.; Ronne, H. Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3. BMC Genomics 2008, 9, 601, 10.1186/1471-2164-9-601
-
(2008)
BMC Genomics
, vol.9
, pp. 601
-
-
Westholm, J.O.1
Nordberg, N.2
Muren, E.3
Ameur, A.4
Komorowski, J.5
Ronne, H.6
-
48
-
-
84890393039
-
The head module of Mediator directs activation of preloaded RNAPII in vivo
-
Lee, S. K.; Chen, X.; Huang, L.; Stargell, L. A. The head module of Mediator directs activation of preloaded RNAPII in vivo. Nucleic Acids Res. 2013, 41 (22), 10124-34, 10.1093/nar/gkt796
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.22
, pp. 10124-10134
-
-
Lee, S.K.1
Chen, X.2
Huang, L.3
Stargell, L.A.4
-
49
-
-
48249120798
-
Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes
-
Willis, I. M.; Chua, G.; Tong, A. H.; Brost, R. L.; Hughes, T. R.; Boone, C.; Moir, R. D. Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes. PLoS Genet. 2008, 4 (7), e1000112, 10.1371/journal.pgen.1000112
-
(2008)
PLoS Genet.
, vol.4
, Issue.7
, pp. e1000112
-
-
Willis, I.M.1
Chua, G.2
Tong, A.H.3
Brost, R.L.4
Hughes, T.R.5
Boone, C.6
Moir, R.D.7
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