The fallopian tube microbiome: Implications for reproductive health

Oncotarget

Volumn 9, Issue 30, 2018, Pages 21541-21551

  Pelzer, Elise S ^a,b   Willner, Dana ^c   Buttini, Melissa ^b   Hafner, Louise M ^a   Theodoropoulos, C ^a   Huygens, Flavia ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^b WESLEY HOSPITAL   (Australia)

^c Australian Centre for Ecogenomics   (Australia)

Author keywords

Fallopian tube; Menstrual cycle; Microbiome

Indexed keywords

DNA; RNA 16S;

ADULT; ARTICLE; BACTERIUM CULTURE; BACTERIUM ISOLATE; COHORT ANALYSIS; CONTROLLED STUDY; FALLOPIAN TUBE; FEMALE; HUMAN; HUMAN TISSUE; HYSTERECTOMY; MICROBIAL COMMUNITY; MICROBIOME; NEXT GENERATION SEQUENCING; NONHUMAN; OVARIECTOMY; PILOT STUDY; POLYMERASE CHAIN REACTION; PROSPECTIVE STUDY; PYROSEQUENCING; REPRODUCTIVE HEALTH; RNA GENE; SALPINGECTOMY;

EID: 85045852188     PISSN: None     EISSN: 19492553     Source Type: Journal    
DOI: 10.18632/oncotarget.25059     Document Type: Article

References (40)

1. Swenson CE, Donegan E, Schachter J. Chlamydia trachomatis-induced salpingitis in mice. J Infect Dis. 1983; 148:1101-7
2. Mardh P, Baldetorp B, Hakansson C, Fritz H, Westrom L. Studies of ciliated epithelia of the human genital tract. 3. Mucociliary wave activity in organ cultures of human fallopian tubes challenged with Neisseria gonorrhoeae and gonococcal endotoxin. Br J Vener Dis. 1979; 55:256-64
3. Mardh PA, Westrom L. Tubal and cervical cultures in acute salpingitis with special reference to Mycoplasma hominis and T-strain mycoplasmas. Br J Vener Dis. 1970; 46:179-86
4. Gajer P, Brotman RM, Bai G, Sakamoto J, Schütte UM, Zhong X, Koenig SS, Fu L, Ma ZS, Zhou X, Abdo Z, Forney LJ, Ravel J. Temporal dynamics of the human vaginal microbiota. Sci Transl Med. 2012; 4:132ra52. https://doi.org/10.1126/scitranslmed.3003605
5. Ma B, Forney LJ, Ravel J. Vaginal microbiome: rethinking health and disease. Annu Rev Microbiol. 2012; 66:371-89
6. Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, et al. Vaginal microbiome of reproductive-age women. Proc Natl Acad Sci U S A. 2011; 108:4680-7. https://doi.org/10.1073/ pnas.1002611107. Epub 2010 Jun 3
7. Aagaard K, Ma J, Antony KM, Ganu R, Petrosino J, Versalovic J. The placenta harbors a unique microbiome. Sci Transl Med. 2014; 6:237ra65
8. Miles SM, Hardy BL, Merrell DS. Investigation of the microbiota of the reproductive tract in women undergoing a total hysterectomy and bilateral salpingo-oopherectomy. Fertil Steril. 2017; 107:813-820.e1
9. Pelzer ES, Willner D, Buttini M, Huygens F. A role for the endometrial microbiome in dysfunctional menstrual bleeding. Antonie van Leeuwenhoek. 2018
10. Wolfe AJ, Toh E, Shibata N, Rong R, Kenton K, Fitzgerald M, Mueller ER, Schreckenberger P, Dong Q, Nelson DE, Brubaker L. Evidence of uncultivated bacteria in the adult female bladder. J Clin Microbiol. 2012; 50:1376-83. https:// doi.org/10.1128/JCM.05852-11. Epub 2012 Jan 25
11. Meirow D, Moses A, Maayan S, Schenker JG. Chronic tuboovarian abscess due to Staphylococcus aureus: a case report and literature review. Eur J Obstet Gynecol Reprod Biol. 1989; 33:275-9
12. Champlot S, Berthelot C, Pruvost M, Bennett EA, Grange T, Geigl EM. An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications. PLoS One. 2010; 5
13. Grahn N, Olofsson M, Ellnebo-Svedlund K, Monstein HJ, Jonasson J. Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons. FEMS Microbiol Lett. 2003; 219:87-91
14. Spangler R, Goddard NL, Thaler DS. Optimizing Taq polymerase concentration for improved signal-to-noise in the broad range detection of low abundance bacteria. PLoS One. 2009; 4:e7010
15. Singhal SR, Chaudhry P, Singhal SK. Staphylococcus tuboovarian abscess after tubal ligation. Int J Gynaecol Obstet. 2005; 91:79-80
16. Spence MR, Blanco LJ, Patel J, Brockman MT. A comparative evaluation of vaginal, cervical and peritoneal flora in normal, healthy women: a preliminary report. Sex Transm Dis. 1982; 9:37-40
17. Moller BR, Kristiansen FV, Thorsen P, Frost L, Mogensen SC. Sterility of the uterine cavity. Acta Obstet Gynecol Scand. 1995; 74:216-9
18. Punia RS, Aggarwal R, Amanjit, Mohan H. Xanthogranulomatous oophoritis and salpingitis: late sequelae of inadequately treated staphylococcal PID. Indian J Pathol Microbiol. 2003; 46:80-1
19. Stepanovic S, Jezek P, Dakic I, Vukovic D, Seifert L. Staphylococcus sciuri: an unusual cause of pelvic inflammatory disease. Int J STD AIDS. 2005; 16:452-53
20. Alexopo ulou A, Papadopoulos N, Eliopoulos DG, Alexaki A, Tsiriga A, Toutouza M, Pectasides D. Increasing frequency of gram-positive cocci and gram-negative multidrug-resistant bacteria in spontaneous bacterial peritonitis. Liver Int. 2013; 33:975-81. https://doi. org/10.1111/liv.12152. Epub 2013 Mar 24
21. Pruthi V, Al-Janabi A, Pereira BM. Characterization of biofilm formed on intrauterine devices. Indian J Med Microbiol. 2003; 21:161-5
22. Light IJ, Sutherland JM, Cochran ML, Sutorius J. Ecologic relation between Staphylococcus aureus and pseudomonas in a nursery population. Another example of bacterial interference. N Engl J Med. 1968; 278:1243-7
23. Banerjee S, Tian T, Wei Z, Shih N, Feldman MD, Alwine JC, Coukos G, Robertson ES. The ovarian cancer oncobiome. Oncotarget. 2017; 8:36225-36245. https://doi. org/0.18632/oncotarget.16717
24. Bricou A, Batt RE, Chapron C. Peritoneal fluid flow influences anatomical distribution of endometriotic lesions: why Sampson seems to be right. Eur J Obstet Gynecol Reprod Biol. 2008; 138:127-34
25. Kamrava M (Kamrava M, editor). Ectopic Pregnancy-Modern Diagnosis and Management. Rijeka: Intechopen; 2011
26. Brook I, Wexler HM, Goldstein EJ. Antianaerobic antimicrobials: spectrum and susceptibility testing. Clin Microbiol Rev. 2013; 26:526-46
27. Group AE. Therapeutic guidelines: antibiotic. Version. 13th ed. Melbourne: Therapeutic Guidelines Limited; 2010
28. Puttemans PJ, Brosens IA. Salpingectomy improves in-vitro fertilization outcome in patients with a hydrosalpinx: blind victimization of the fallopian tube? Hum Reprod. 1996; 11:2079-81
29. Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ. Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol. 2008; 74:2461-70
30. Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 2013; 41:e1. https://doi.org/10.1093/nar/gks808. Epub 2012 Aug 28
31. Srinivasan R, Karaoz U, Volegova M, MacKichan J, Kato-Maeda M, Miller S, Nadarajan R, Brodie EL, Lynch SV. Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens. PLoS One. 2015; 10:e0117617. https://doi.org/10.1371/journal.pone.0117617. eCollection 2015
32. Golod NA, Loiko NG, Muliukin AL, Neimatov AL, Vorob'eva LI, Suzina NE, Shanenko EF, Gal'chenko VF, El'-Registan GI. Adaptation of lactic acid bacteria to unfavorable growth conditions. [Article in Russian] Mikrobiologiia. 2009; 78:317-27
33. Wood TK, Knabel SJ, Kwan BW. Bacterial persister cell formation and dormancy. Appl Environ Microbiol. 2013; 79:71
34. Chakravorty S, Helb D, Burday M, Connell N, Alland D. A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J Microbiol Methods. 2007; 69:330-9
35. Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol. 2010; 12:118-23
36. Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW. Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat Methods. 2012; 9:425-6
37. Liu KL, Porras-Alfaro A, Kuske CR, Eichorst SA, Xie G. Accurate, rapid taxonomic classification of fungal largesubunit rRNA genes. Appl Environ Microbiol. 2012; 78:1523-33
38. McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012; 6:610-8. https://doi.org/10.1038/ ismej.2011.139. Epub 2011 Dec 1
39. Kuczynski J, Stombaugh J, Walters WA, Gonzalez A, Caporaso JG, Knight R. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Microbiol. 2012;Chapter 1:Unit 1E 5
40. White JR, Nagarajan N, Pop M. Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput Biol. 2009; 5:e1000352