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Volumn 18, Issue 1, 2018, Pages

Ginseng Genome Database: An open-access platform for genomics of Panax ginseng

Author keywords

Genome database; Ginseng annotation; Ginseng genome browser; Panax ginseng

Indexed keywords

GINSENOSIDE;

EID: 85045402038     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-018-1282-9     Document Type: Article
Times cited : (77)

References (37)
  • 1
    • 84857358640 scopus 로고    scopus 로고
    • Advances in study of ginsenoside biosynthesis pathway in Panax ginseng C. A. Meyer
    • Wang J, Gao WY, Zhang J, Zuo BM, Zhang LM, Huang LQ. Advances in study of ginsenoside biosynthesis pathway in Panax ginseng C. A. Meyer. Acta Physiol Plant. 2012;34(2):397-403.
    • (2012) Acta Physiol Plant , vol.34 , Issue.2 , pp. 397-403
    • Wang, J.1    Gao, W.Y.2    Zhang, J.3    Zuo, B.M.4    Zhang, L.M.5    Huang, L.Q.6
  • 2
    • 0015956637 scopus 로고
    • Effect of Panax Ginseng root on exhaustive exercise in mice
    • Saito H, Yoshida Y, Takagi K. Effect of Panax Ginseng root on exhaustive exercise in mice. Jpn J Pharmacol. 1974;24(1):119-27.
    • (1974) Jpn J Pharmacol , vol.24 , Issue.1 , pp. 119-127
    • Saito, H.1    Yoshida, Y.2    Takagi, K.3
  • 3
    • 84862792292 scopus 로고    scopus 로고
    • Ginsenoside Re: its chemistry, metabolism and pharmacokinetics
    • Peng D, Wang H, Qu C, Xie L, Wicks SM, Xie J. Ginsenoside Re: its chemistry, metabolism and pharmacokinetics. Chin Med. 2012;7:2.
    • (2012) Chin Med , vol.7 , pp. 2
    • Peng, D.1    Wang, H.2    Qu, C.3    Xie, L.4    Wicks, S.M.5    Xie, J.6
  • 4
    • 0344549853 scopus 로고    scopus 로고
    • Ginseng pharmacology: multiple constituents and multiple actions
    • Attele AS, Wu JA, Yuan CS. Ginseng pharmacology: multiple constituents and multiple actions. Biochem Pharmacol. 1999;58(11):1685-93.
    • (1999) Biochem Pharmacol , vol.58 , Issue.11 , pp. 1685-1693
    • Attele, A.S.1    Wu, J.A.2    Yuan, C.S.3
  • 5
    • 53349141483 scopus 로고    scopus 로고
    • Ginsenoside Rb1 stimulates glucose uptake through insulin-like signaling pathway in 3T3-L1 adipocytes
    • Shang W, Yang Y, Zhou L, Jiang B, Jin H, Chen M. Ginsenoside Rb1 stimulates glucose uptake through insulin-like signaling pathway in 3T3-L1 adipocytes. J Endocrinol. 2008;198(3):561-9.
    • (2008) J Endocrinol , vol.198 , Issue.3 , pp. 561-569
    • Shang, W.1    Yang, Y.2    Zhou, L.3    Jiang, B.4    Jin, H.5    Chen, M.6
  • 6
    • 33645058893 scopus 로고    scopus 로고
    • Use of ginseng in medicine with emphasis on neurodegenerative disorders
    • Radad K, Gille G, Liu L, Rausch WD. Use of ginseng in medicine with emphasis on neurodegenerative disorders. J Pharmacol Sci. 2006;100(3):175-86.
    • (2006) J Pharmacol Sci , vol.100 , Issue.3 , pp. 175-186
    • Radad, K.1    Gille, G.2    Liu, L.3    Rausch, W.D.4
  • 7
    • 84895921714 scopus 로고    scopus 로고
    • Major repeat components covering one-third of the ginseng (Panax ginseng C.A. Meyer) genome and evidence for allotetraploidy
    • Choi HI, Waminal NE, Park HM, Kim NH, Choi BS, Park M, Choi D, Lim YP, Kwon SJ, Park BS, et al. Major repeat components covering one-third of the ginseng (Panax ginseng C.A. Meyer) genome and evidence for allotetraploidy. Plant J. 2014;77(6):906-16.
    • (2014) Plant J , vol.77 , Issue.6 , pp. 906-916
    • Choi, H.I.1    Waminal, N.E.2    Park, H.M.3    Kim, N.H.4    Choi, B.S.5    Park, M.6    Choi, D.7    Lim, Y.P.8    Kwon, S.J.9    Park, B.S.10
  • 8
    • 84875278660 scopus 로고    scopus 로고
    • Karyotype analysis of Panax ginseng C.A.Meyer, 1843 (Araliaceae) based on rDNA loci and DAPI band distribution
    • Waminal NE, Park HM, Ryu KB, Kim JH, Yang TJ, Kim HH. Karyotype analysis of Panax ginseng C.A.Meyer, 1843 (Araliaceae) based on rDNA loci and DAPI band distribution. Comp Cytogenet. 2012;15:425-41.
    • (2012) Comp Cytogenet , vol.15 , pp. 425-441
    • Waminal, N.E.1    Park, H.M.2    Ryu, K.B.3    Kim, J.H.4    Yang, T.J.5    Kim, H.H.6
  • 12
    • 84875945076 scopus 로고    scopus 로고
    • Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer
    • Li C, Zhu Y, Guo X, Sun C, Luo H, Song J, Li Y, Wang L, Qian J, Chen S. Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer. BMC Genomics. 2013;14:245.
    • (2013) BMC Genomics , vol.14 , pp. 245
    • Li, C.1    Zhu, Y.2    Guo, X.3    Sun, C.4    Luo, H.5    Song, J.6    Li, Y.7    Wang, L.8    Qian, J.9    Chen, S.10
  • 13
    • 84935446215 scopus 로고    scopus 로고
    • Comprehensive survey of genetic diversity in chloroplast genomes and 45S nrDNAs within Panax ginseng species
    • Kim K, Lee SC, Lee J, Lee HO, Joh HJ, Kim NH, Park HS, Yang TJ. Comprehensive survey of genetic diversity in chloroplast genomes and 45S nrDNAs within Panax ginseng species. PLoS One. 2015;10:e0117159.
    • (2015) PLoS One , vol.10
    • Kim, K.1    Lee, S.C.2    Lee, J.3    Lee, H.O.4    Joh, H.J.5    Kim, N.H.6    Park, H.S.7    Yang, T.J.8
  • 15
    • 85021923466 scopus 로고    scopus 로고
    • Evolution of the Araliaceae family inferred from complete chloroplast genomes and 45S nrDNAs of 10 Panax-related species
    • Kim K, Nguyen VB, Dong JZ, Wang Y, Park JY, Lee SC, Yang TJ. Evolution of the Araliaceae family inferred from complete chloroplast genomes and 45S nrDNAs of 10 Panax-related species. Sci Rep. 2017;7:4917.
    • (2017) Sci Rep , vol.7 , pp. 4917
    • Kim, K.1    Nguyen, V.B.2    Dong, J.Z.3    Wang, Y.4    Park, J.Y.5    Lee, S.C.6    Yang, T.J.7
  • 16
    • 85026839511 scopus 로고    scopus 로고
    • Authentication markers for five major Panax species developed via comparative analysis of complete chloroplast genome sequences
    • Nguyen VB, Park HS, Lee SC, Lee J, Park JY, Yang TJ. Authentication markers for five major Panax species developed via comparative analysis of complete chloroplast genome sequences. J Agric Food Chem. 2017;65(30):6298-306.
    • (2017) J Agric Food Chem , vol.65 , Issue.30 , pp. 6298-6306
    • Nguyen, V.B.1    Park, H.S.2    Lee, S.C.3    Lee, J.4    Park, J.Y.5    Yang, T.J.6
  • 17
    • 84954487937 scopus 로고    scopus 로고
    • DNA barcoding, microarrays and next generation sequencing: recent tools for genetic diversity estimation and authentication of medicinal plants
    • Sarwat M, Yamdagni MM. DNA barcoding, microarrays and next generation sequencing: recent tools for genetic diversity estimation and authentication of medicinal plants. Crit Rev Biotechnol. 2016;36(2):191-203.
    • (2016) Crit Rev Biotechnol , vol.36 , Issue.2 , pp. 191-203
    • Sarwat, M.1    Yamdagni, M.M.2
  • 23
    • 84960089630 scopus 로고    scopus 로고
    • BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
    • Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M. BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS. Bioinformatics. 2015;32:767-9.
    • (2015) Bioinformatics , vol.32 , pp. 767-769
    • Hoff, K.J.1    Lange, S.2    Lomsadze, A.3    Borodovsky, M.4    Stanke, M.5
  • 26
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005;21(18):3674-6.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 28
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics. 2009;25(14):1754-60.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 30
    • 84870814915 scopus 로고    scopus 로고
    • SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
    • Kopylova E, Noé L, Touzet H. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinformatics. 2012;28(24):3211-7.
    • (2012) Bioinformatics , vol.28 , Issue.24 , pp. 3211-3217
    • Kopylova, E.1    Noé, L.2    Touzet, H.3
  • 31
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC toolkit: a toolkit for quality control of next generation sequencing data
    • Patel RK, Jain M. NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 2012;7(2):e30619.
    • (2012) PLoS One , vol.7 , Issue.2
    • Patel, R.K.1    Jain, M.2
  • 34
    • 84891810676 scopus 로고    scopus 로고
    • PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
    • Jin J, Zhang H, Kong L, Gao G, Luo J. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res. 2013;42:D1182-7.
    • (2013) Nucleic Acids Res , vol.42 , pp. D1182-D1187
    • Jin, J.1    Zhang, H.2    Kong, L.3    Gao, G.4    Luo, J.5
  • 35
    • 84893929231 scopus 로고    scopus 로고
    • Both the mevalonate and the non-mevalonate 5pathways are involved in ginsenoside biosynthesis
    • Zhao S, Wang L, Liu L, Liang Y, Sun Y, Wu J. Both the mevalonate and the non-mevalonate 5pathways are involved in ginsenoside biosynthesis. Plant Cell Rep. 2014;33(3):393-400.
    • (2014) Plant Cell Rep , vol.33 , Issue.3 , pp. 393-400
    • Zhao, S.1    Wang, L.2    Liu, L.3    Liang, Y.4    Sun, Y.5    Wu, J.6
  • 36
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 2011;12:323.
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 37
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: a genomic mapping and alignment program for mRNA and EST sequences
    • Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics. 2005;21(9):1859-75.
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.