메뉴 건너뛰기




Volumn 9, Issue MAR, 2018, Pages

Navigating the interface between landscape genetics and landscape genomics

Author keywords

Landscape genetics; Landscape genomics; Local adaptation; Selection; Spatial analyses

Indexed keywords

ANALYTIC METHOD; CELL PROLIFERATION; DIFFERENTIATION; GENE FLOW; GENETIC MARKER; GENETIC VARIATION; GENOMICS; GEOGRAPHIC DISTRIBUTION; HUMAN; LANDSCAPE; LOCAL ADAPTATION; NEXT GENERATION SEQUENCING; POPULATION STRUCTURE; REVIEW; SAMPLING; SIMULATION; SPATIAL ANALYSIS; STUDY DESIGN;

EID: 85043493498     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2018.00068     Document Type: Review
Times cited : (64)

References (123)
  • 1
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander, D. H., Novembre, J., and Lange, K. (2009). Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655-1664. doi: 10.1101/gr.094052.109
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 2
    • 77956084891 scopus 로고    scopus 로고
    • Considering spatial and temporal scale in landscape genetic studies of gene flow
    • Anderson, C. D., Epperson, B. K., Fortin, M. J., Holdregger, R., James, P. M. A., Rosenberg, M. S., et al. (2010). Considering spatial and temporal scale in landscape genetic studies of gene flow. Mol. Ecol. 19, 3565-3575. doi: 10.1111/j.1365-294X.2010.04757.x
    • (2010) Mol. Ecol , vol.19 , pp. 3565-3575
    • Anderson, C.D.1    Epperson, B.K.2    Fortin, M.J.3    Holdregger, R.4    James, P.M.A.5    Rosenberg, M.S.6
  • 3
    • 84955384785 scopus 로고    scopus 로고
    • Harnessing the power of RADseq for ecological and evolutionary genomics
    • Andrews, K. R., Good, J. M., Miller, M. R., Luikart, G., and Hohenlohe, P. A. (2016). Harnessing the power of RADseq for ecological and evolutionary genomics. Nat. Rev. Genet. 17, 81-92. doi: 10.1038/nrg.2015.28
    • (2016) Nat. Rev. Genet , vol.17 , pp. 81-92
    • Andrews, K.R.1    Good, J.M.2    Miller, M.R.3    Luikart, G.4    Hohenlohe, P.A.5
  • 4
    • 20344385787 scopus 로고    scopus 로고
    • Epigenetic transgenerational actions of endocrine disruptors and male fertility
    • Anway, M. D., Cupp, A. S., Uzumcu, M., and Skinner, M. K. (2005). Epigenetic transgenerational actions of endocrine disruptors and male fertility. Science 308, 1466-1469. doi: 10.1126/science.1108190
    • (2005) Science , vol.308 , pp. 1466-1469
    • Anway, M.D.1    Cupp, A.S.2    Uzumcu, M.3    Skinner, M.K.4
  • 6
    • 34547468520 scopus 로고    scopus 로고
    • Two routes to functional adaptation: Tibetan and Andean high-altitude natives
    • Beall, C. M. (2007a). Two routes to functional adaptation: Tibetan and Andean high-altitude natives. Proc. Natl. Acad. Sci. U.S.A. 104(Suppl. 1), 8655-8660. doi: 10.1073/pnas.0701985104
    • (2007) Proc. Natl. Acad. Sci. U.S.A , vol.104 , pp. 8655-8660
    • Beall, C.M.1
  • 7
    • 34548695707 scopus 로고    scopus 로고
    • Detecting natural selection in high-altitude human populations
    • Beall, C. M. (2007b). Detecting natural selection in high-altitude human populations. Respir. Physiol. Neurobiol. 158, 161-171. doi: 10.1016/j.resp.2007.05.013
    • (2007) Respir. Physiol. Neurobiol , vol.158 , pp. 161-171
    • Beall, C.M.1
  • 8
    • 0030467524 scopus 로고    scopus 로고
    • Evaluating loci for use in the genetic analysis of population structure
    • Beaumont, M. A., and Nichols, R. A. (1996). Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. Ser. B Biol. Sci. Biol. Sci. 263, 1619-1626. doi: 10.1098/rspb.1996.0237
    • (1996) Proc. R. Soc. Lond. Ser. B Biol. Sci. Biol. Sci , vol.263 , pp. 1619-1626
    • Beaumont, M.A.1    Nichols, R.A.2
  • 9
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B Stat. Methodol. 57, 289-300
    • (1995) J. R. Stat. Soc. Series B Stat. Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 10
    • 0016345602 scopus 로고
    • Three abundance classes in HeLa cell messenger RNA
    • Bishop, J. O., Morton, J. G., Rosbash, M., and Richardson, M. (1974). Three abundance classes in HeLa cell messenger RNA. Nature 250, 199-204. doi: 10.1038/250199a0
    • (1974) Nature , vol.250 , pp. 199-204
    • Bishop, J.O.1    Morton, J.G.2    Rosbash, M.3    Richardson, M.4
  • 11
    • 0035045933 scopus 로고    scopus 로고
    • Population genomics: genome-wide sampling of insect populations
    • Black, W. C., Baer, C. F., Antolin, M. F., and DuTeau, N. M. (2001). Population genomics: genome-wide sampling of insect populations. Annu. Rev. Entomol. 46, 441-469. doi: 10.1146/annurev.ento.46.1.441
    • (2001) Annu. Rev. Entomol , vol.46 , pp. 441-469
    • Black, W.C.1    Baer, C.F.2    Antolin, M.F.3    DuTeau, N.M.4
  • 12
    • 78751653688 scopus 로고    scopus 로고
    • Detecting selection in population trees: the lewontin and krakauer test extended
    • Bonhomme, M., Chevalet, C., Servin, B., Boitard, S., Abdallah, J., Blott, S., et al. (2010). Detecting selection in population trees: the lewontin and krakauer test extended. Genetics 186, 241-262. doi: 10.1534/genetics.110.117275
    • (2010) Genetics , vol.186 , pp. 241-262
    • Bonhomme, M.1    Chevalet, C.2    Servin, B.3    Boitard, S.4    Abdallah, J.5    Blott, S.6
  • 13
    • 0000286531 scopus 로고
    • An ordination of the upland forest communities of southern Wisconsin
    • Bray, J. R., and Curtis, J. T. (1957). An ordination of the upland forest communities of southern Wisconsin. Ecol. Monogr. 27, 325-349. doi: 10.2307/1942268
    • (1957) Ecol. Monogr , vol.27 , pp. 325-349
    • Bray, J.R.1    Curtis, J.T.2
  • 14
    • 0000245743 scopus 로고    scopus 로고
    • Statistical modeling: the two cultures (with comments and a rejoinder by the author)
    • Breiman, L. (2001). Statistical modeling: the two cultures (with comments and a rejoinder by the author). Stat. Sci. 16:3. doi: 10.1214/ss/1009213726
    • (2001) Stat. Sci , vol.16 , pp. 3
    • Breiman, L.1
  • 15
    • 84878461613 scopus 로고    scopus 로고
    • Stacks: an analysis tool set for population genomics
    • Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A., and Cresko, W. A. (2013). Stacks: an analysis tool set for population genomics. Mol. Ecol. 22, 3124-3140. doi: 10.1111/mec.12354
    • (2013) Mol. Ecol , vol.22 , pp. 3124-3140
    • Catchen, J.1    Hohenlohe, P.A.2    Bassham, S.3    Amores, A.4    Cresko, W.A.5
  • 16
    • 85017628595 scopus 로고    scopus 로고
    • Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations
    • Catchen, J. M., Hohenlohe, P. A., Bernatchez, L., Funk, W. C., Andrews, K. R., and Allendorf, F. W. (2017). Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations. Mol. Ecol. Resou. 22, 362-365. doi: 10.1111/1755-0998.12669
    • (2017) Mol. Ecol. Resou , vol.22 , pp. 362-365
    • Catchen, J.M.1    Hohenlohe, P.A.2    Bernatchez, L.3    Funk, W.C.4    Andrews, K.R.5    Allendorf, F.W.6
  • 17
    • 84956573207 scopus 로고    scopus 로고
    • TESS3: fast inference of spatial population structure and genome scans for selection
    • Caye, K., Deist, T. M., Martins, H., Michel, H., and François, O. (2016). TESS3: fast inference of spatial population structure and genome scans for selection. Mol. Ecol. Res. 16, 540-548. doi: 10.1111/1755-0998.12471
    • (2016) Mol. Ecol. Res , vol.16 , pp. 540-548
    • Caye, K.1    Deist, T.M.2    Martins, H.3    Michel, H.4    François, O.5
  • 18
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth, B., Morgan, M. T., and Charlesworth, D. (1993). The effect of deleterious mutations on neutral molecular variation. Genetics. 134, 1289-1303
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 19
    • 0038165369 scopus 로고    scopus 로고
    • Confidence limits for regression relationships between distance matrices: estimating gene flow with distance
    • Clarke, R. T., Rothery, P., and Raybould, A. F. (2002). Confidence limits for regression relationships between distance matrices: estimating gene flow with distance. J Agric. Biol. Environ. Stat. 7, 361-372. doi: 10.1198/108571102320
    • (2002) J Agric. Biol. Environ. Stat , vol.7 , pp. 361-372
    • Clarke, R.T.1    Rothery, P.2    Raybould, A.F.3
  • 20
    • 77956491134 scopus 로고    scopus 로고
    • Using environmental correlations to identify loci underlying local adaptation
    • Coop, G., Witonsky, D., Di Rienzo, A., and Pritchard, J. K. (2010). Using environmental correlations to identify loci underlying local adaptation. Genetics 185. 1411-1423. doi: 10.1534/genetics.110.114819
    • (2010) Genetics , vol.185 , pp. 1411-1423
    • Coop, G.1    Witonsky, D.2    Di Rienzo, A.3    Pritchard, J.K.4
  • 21
  • 22
    • 84874409839 scopus 로고    scopus 로고
    • Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations
    • De Mita, S., Thuillet, A. C., Gay, L., Ahmadi, N., Manel, S., Ronfort, J., et al. (2013). Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol. Ecol. 22, 1383-1399. doi: 10.1111/mec.12182
    • (2013) Mol. Ecol , vol.22 , pp. 1383-1399
    • De Mita, S.1    Thuillet, A.C.2    Gay, L.3    Ahmadi, N.4    Manel, S.5    Ronfort, J.6
  • 23
    • 84898547407 scopus 로고    scopus 로고
    • Genome scan methods against more complex models: when and how much should we trust them?
    • de Villemereuil, P., Frichot, é., Bazin, é., François, O., and Gaggiotti, O. E. (2014). Genome scan methods against more complex models: when and how much should we trust them?. Mol. Ecol. 23, 2006-2019. doi: 10.1111/mec.12705
    • (2014) Mol. Ecol , vol.23 , pp. 2006-2019
    • de Villemereuil, P.1    Frichot, É.2    Bazin, É.3    François, O.4    Gaggiotti, O.E.5
  • 24
    • 84906761460 scopus 로고    scopus 로고
    • Genome scans for detecting footprints of local adaptation using a Bayesian factor model
    • Duforet-Frebourg, N., Bazin, E., and Blum, M. G. B. (2014). Genome scans for detecting footprints of local adaptation using a Bayesian factor model. Mol. Biol. Evol. 31, 2483-2495. doi: 10.1093/molbev/msu182
    • (2014) Mol. Biol. Evol , vol.31 , pp. 2483-2495
    • Duforet-Frebourg, N.1    Bazin, E.2    Blum, M.G.B.3
  • 25
    • 67649879347 scopus 로고    scopus 로고
    • Spatial inference of admixture proportions and secondary contact zones
    • Durand, E., Jay, F., Gaggiotti, O. E., and François, O. (2009). Spatial inference of admixture proportions and secondary contact zones. Mol. Biol. Evol. 26, 1963-197310. doi: 10.1093/molbev/msp106
    • (2009) Mol. Biol. Evol , vol.26 , pp. 1963-197310
    • Durand, E.1    Jay, F.2    Gaggiotti, O.E.3    François, O.4
  • 26
    • 3042821261 scopus 로고    scopus 로고
    • Population graphs: the graph theoretic shape of genetic structure
    • Dyer, R. J., and Nason, J. D. (2004). Population graphs: the graph theoretic shape of genetic structure. Mol. Ecol. 13, 1713-1727. doi: 10.1111/j.1365-294x.2004.02177.x
    • (2004) Mol. Ecol , vol.13 , pp. 1713-1727
    • Dyer, R.J.1    Nason, J.D.2
  • 28
    • 76449096202 scopus 로고    scopus 로고
    • Genetic consequences of range expansions
    • Excoffier, L., Foll, M., and Petit, R. J. (2009). Genetic consequences of range expansions. Annu. Rev. Ecol. Evol. Syst. 40, 481-501. doi: 10.1146/annurev.ecolsys.39.110707.173414
    • (2009) Annu. Rev. Ecol. Evol. Syst , vol.40 , pp. 481-501
    • Excoffier, L.1    Foll, M.2    Petit, R.J.3
  • 29
    • 84868534630 scopus 로고    scopus 로고
    • Transposable elements, epigenetics, and genome evolution
    • Federoff, N. V. (2012). Transposable elements, epigenetics, and genome evolution. Science 338, 758-767. doi: 10.1126/science.338.6108.758
    • (2012) Science , vol.338 , pp. 758-767
    • Federoff, N.V.1
  • 30
    • 34247340904 scopus 로고    scopus 로고
    • Using generalized dissimilarity modelling to analyze and predict patterns of beta diversity in regional biodiversity assessment
    • Ferrier, S., Manion, G., Elith, J., and Richardson, K. (2007). Using generalized dissimilarity modelling to analyze and predict patterns of beta diversity in regional biodiversity assessment. Divers. Distrib. 13, 252-264. doi: 10.1111/j.1472-4642.2007.00341.x
    • (2007) Divers. Distrib , vol.13 , pp. 252-264
    • Ferrier, S.1    Manion, G.2    Elith, J.3    Richardson, K.4
  • 31
    • 84916893470 scopus 로고    scopus 로고
    • Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation
    • Fitzpatrick, M. C., and Keller, S. R. (2015). Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation. Ecol. Letts. 18, 1-16. doi: 10.1111/ele.12376
    • (2015) Ecol. Letts , vol.18 , pp. 1-16
    • Fitzpatrick, M.C.1    Keller, S.R.2
  • 32
    • 58149347836 scopus 로고    scopus 로고
    • A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
    • Foll, M., and Gaggiotti, O. (2008). A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180, 977-993. doi: 10.1534/genetics.108.092221
    • (2008) Genetics , vol.180 , pp. 977-993
    • Foll, M.1    Gaggiotti, O.2
  • 33
    • 84954077001 scopus 로고    scopus 로고
    • Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes
    • Forester, B. R., Jones, M. R., Joost, S., Landguth, E. L., and Lasky, J. R. (2015). Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes. Mol. Ecol. 25, 104-120. doi: 10.1111/mec.13476
    • (2015) Mol. Ecol , vol.25 , pp. 104-120
    • Forester, B.R.1    Jones, M.R.2    Joost, S.3    Landguth, E.L.4    Lasky, J.R.5
  • 34
    • 84954076037 scopus 로고    scopus 로고
    • Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels
    • Fraïsse, C., Belkhir, K., Welch, J. J., and Bierne, N. (2016). Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels. Mol. Ecol. 25, 269-286. doi: 10.1111/mec.13299
    • (2016) Mol. Ecol , vol.25 , pp. 269-286
    • Fraïsse, C.1    Belkhir, K.2    Welch, J.J.3    Bierne, N.4
  • 35
    • 84957583711 scopus 로고    scopus 로고
    • Controlling false discoveries in genome scans for selection
    • François, O., Martins, H., Caye, K., and Schoville, S. D. (2016). Controlling false discoveries in genome scans for selection. Mol. Ecol. 25, 454-469. doi: 10.1111/mec.13513
    • (2016) Mol. Ecol , vol.25 , pp. 454-469
    • François, O.1    Martins, H.2    Caye, K.3    Schoville, S.D.4
  • 36
    • 84879335655 scopus 로고    scopus 로고
    • Testing for associations between loci and environmental gradients using latent factor mixed models
    • Frichot, E., Schoville, S. D., Bouchard, G., and François, O. (2013). Testing for associations between loci and environmental gradients using latent factor mixed models. Mol. Biol. Evol. 30, 1687-1699. doi: 10.1093/molbev/mst063
    • (2013) Mol. Biol. Evol , vol.30 , pp. 1687-1699
    • Frichot, E.1    Schoville, S.D.2    Bouchard, G.3    François, O.4
  • 37
    • 81755177812 scopus 로고    scopus 로고
    • Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution
    • Fumagalli, M., Sironi, M., Pozzoli, U., Ferrer-Admettla, A., Pattini, L., and Nielsen, R. (2011). Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution. PLoS Genet. 7:e1002355. doi: 10.1371/journal.pgen.1002355
    • (2011) PLoS Genet , vol.7
    • Fumagalli, M.1    Sironi, M.2    Pozzoli, U.3    Ferrer-Admettla, A.4    Pattini, L.5    Nielsen, R.6
  • 38
    • 84865552514 scopus 로고    scopus 로고
    • Harnessing genomics for delineating conservation units
    • Funk, W. C., McKay, J. K., Hohenlohe, P. A., and Allendorf, F. W. (2012). Harnessing genomics for delineating conservation units. Trends Ecol. Evol. 27, 489-496. doi: 10.1016/j.tree.2012.05.012
    • (2012) Trends Ecol. Evol , vol.27 , pp. 489-496
    • Funk, W.C.1    McKay, J.K.2    Hohenlohe, P.A.3    Allendorf, F.W.4
  • 39
    • 77949336211 scopus 로고    scopus 로고
    • INTROGRESS: a software package for mapping components of isolation in hybrids
    • Gompert, Z., and Alex Buerkle, C. (2010). INTROGRESS: a software package for mapping components of isolation in hybrids. Mol. Ecol. Resou. 10, 378-384. doi: 10.1111/j.1755-0998.2009.02733.x
    • (2010) Mol. Ecol. Resou , vol.10 , pp. 378-384
    • Gompert, Z.1    Alex Buerkle, C.2
  • 40
    • 79955625454 scopus 로고    scopus 로고
    • Bayesian estimation of genomic clines
    • Gompert, Z., and Buerkle, C. (2011). Bayesian estimation of genomic clines. Mol. Ecol. 20, 2111-2127. doi: 10.1111/j.1365-294X.2011.05074.x
    • (2011) Mol. Ecol , vol.20 , pp. 2111-2127
    • Gompert, Z.1    Buerkle, C.2
  • 41
    • 84867552778 scopus 로고    scopus 로고
    • bgc: software for Bayesian estimation of genomic clines
    • Gompert, Z., and Buerkle, C. A. (2012). bgc: software for Bayesian estimation of genomic clines. Mol. Ecol. Resou. 12, 1168-1176. doi: 10.1111/1755-0998.12009.x
    • (2012) Mol. Ecol. Resou , vol.12 , pp. 1168-1176
    • Gompert, Z.1    Buerkle, C.A.2
  • 42
    • 84995969818 scopus 로고    scopus 로고
    • Multilocus approaches for the measurement of selection on correlated genetic loci
    • Gompert, Z., Egan, S. P., Barrett, R. D., Feder, J. L., and Nosil, P. (2017). Multilocus approaches for the measurement of selection on correlated genetic loci. Mol. Ecol. 26, 365-382. doi: 10.1111/mec.13867
    • (2017) Mol. Ecol , vol.26 , pp. 365-382
    • Gompert, Z.1    Egan, S.P.2    Barrett, R.D.3    Feder, J.L.4    Nosil, P.5
  • 43
    • 70449711248 scopus 로고    scopus 로고
    • Statistical methods in spatial genetics
    • Guillot, G., Leblois, R., Coulon, A., and Frantz, A. C. (2009). Statistical methods in spatial genetics. Mol. Ecol. 18, 4734-4756. doi: 10.1111/j.1365-294X.2009.04410.x
    • (2009) Mol. Ecol , vol.18 , pp. 4734-4756
    • Guillot, G.1    Leblois, R.2    Coulon, A.3    Frantz, A.C.4
  • 44
    • 28344432025 scopus 로고    scopus 로고
    • Geneland: a program for landscape genetics
    • Guillot, G., Mortier, F., and Estoup, A. (2005). Geneland: a program for landscape genetics. Mol. Ecol. Notes 5, 712-715. doi: 10.1111/j.1471-8286.2005.01031.x
    • (2005) Mol. Ecol. Notes , vol.5 , pp. 712-715
    • Guillot, G.1    Mortier, F.2    Estoup, A.3
  • 45
    • 84883233021 scopus 로고    scopus 로고
    • Detecting correlation between allele frequencies and environmental variables as a signature of selection A fast computational approach for genome-wide studies
    • Guillot, G., Vitalis, R., le Rouzic, A., and Gautier, M. (2014). Detecting correlation between allele frequencies and environmental variables as a signature of selection. A fast computational approach for genome-wide studies. Spat. Stat. 8, 145-155. doi: 10.1016/j.spasta.2013.08.001
    • (2014) Spat. Stat , vol.8 , pp. 145-155
    • Guillot, G.1    Vitalis, R.2    le Rouzic, A.3    Gautier, M.4
  • 46
    • 84883774412 scopus 로고    scopus 로고
    • Robust identification of local adaptation from allele frequencies
    • Günther, T., and Coop, G. (2013). Robust identification of local adaptation from allele frequencies. Genetics 195, 205-220. doi: 10.1534/genetics.113.152462
    • (2013) Genetics , vol.195 , pp. 205-220
    • Günther, T.1    Coop, G.2
  • 47
    • 84954078379 scopus 로고    scopus 로고
    • Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication
    • Haasl, R. J., and Payseur, B. A. (2016). Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication. Mol. Ecol. 25, 5-23. doi: 10.1111/mec.13339
    • (2016) Mol. Ecol , vol.25 , pp. 5-23
    • Haasl, R.J.1    Payseur, B.A.2
  • 48
    • 80053587873 scopus 로고    scopus 로고
    • Adaptation to climate across the Arabidopsis thaliana genome
    • Hancock, A. M., Brachi, B., Faure, N., Horton, M. W., Jarymowycz, L. B., Sperone, F. G., et al. (2011). Adaptation to climate across the Arabidopsis thaliana genome. Science 334, 83-86. doi: 10.1126/science.1209244
    • (2011) Science , vol.334 , pp. 83-86
    • Hancock, A.M.1    Brachi, B.2    Faure, N.3    Horton, M.W.4    Jarymowycz, L.B.5    Sperone, F.G.6
  • 49
    • 85019157518 scopus 로고    scopus 로고
    • No evidence for adaptation to local rhizobial mutualists in the legume Medicago lupulina
    • Harrison, T. L., Wood, C. W., Borges, I. L., and Stinchcombe, J. R. (2017). No evidence for adaptation to local rhizobial mutualists in the legume Medicago lupulina. Ecol. Evol. 7, 4367-4376. doi: 10.1002/ece3.3012
    • (2017) Ecol. Evol , vol.7 , pp. 4367-4376
    • Harrison, T.L.1    Wood, C.W.2    Borges, I.L.3    Stinchcombe, J.R.4
  • 50
    • 29544443445 scopus 로고    scopus 로고
    • Very high resolution interpolated climate surfaces for global land areas
    • Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G., and Jarvis, A. (2005). Very high resolution interpolated climate surfaces for global land areas. Int. J. Climatol. 25, 1965-1978. doi: 10.1002/joc.1276
    • (2005) Int. J. Climatol , vol.25 , pp. 1965-1978
    • Hijmans, R.J.1    Cameron, S.E.2    Parra, J.L.3    Jones, P.G.4    Jarvis, A.5
  • 51
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff, L. A., Sethupathy, P., Junkins, H. A., Ramos, E. M., Mehta, J. P., Collins, F. S., et al. (2009). Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl. Acad. Sci. U.S.A. 106, 9362-9367 doi: 10.1073/pnas.0903103106
    • (2009) Proc. Natl. Acad. Sci. U.S.A , vol.106 , pp. 9362-9367
    • Hindorff, L.A.1    Sethupathy, P.2    Junkins, H.A.3    Ramos, E.M.4    Mehta, J.P.5    Collins, F.S.6
  • 52
    • 84988632832 scopus 로고    scopus 로고
    • Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions
    • Hoban, S., Kelley, J. L., Lotterhos, K. E., Antolin, M. F., Bradburd, G., Lowry, D. B., et al. (2016). Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions. Am. Nat. 188, 379-397. doi: 10.1086/688018
    • (2016) Am. Nat , vol.188 , pp. 379-397
    • Hoban, S.1    Kelley, J.L.2    Lotterhos, K.E.3    Antolin, M.F.4    Bradburd, G.5    Lowry, D.B.6
  • 53
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: evo devo and the genetics of adaptation
    • Hoekstra, H. E., and Coyne, J. A. (2007). The locus of evolution: evo devo and the genetics of adaptation. Evolution 61, 995-1016. doi: 10.1111/j.1558-5646.2007.00105.x
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 54
    • 84888825100 scopus 로고    scopus 로고
    • Integrating landscape genomics and spatially explicit explicit approaches to detect loci under selection in clinal populations
    • Jones, M. R., Forester, B. R., Teufel, A. I., Adams, R. V., Anstett, D. N., Goodrich, B. A., et al. (2013). Integrating landscape genomics and spatially explicit explicit approaches to detect loci under selection in clinal populations. Evolution 67, 3455-3468. doi: 10.1111/evo.12237
    • (2013) Evolution , vol.67 , pp. 3455-3468
    • Jones, M.R.1    Forester, B.R.2    Teufel, A.I.3    Adams, R.V.4    Anstett, D.N.5    Goodrich, B.A.6
  • 55
    • 84954048200 scopus 로고    scopus 로고
    • Targeted capture in evolutionary and ecological genomics
    • Jones, M. R., and Good, J. M. (2016). Targeted capture in evolutionary and ecological genomics. Mol. Ecol. 25, 185-202. doi: 10.1111/mec.13304
    • (2016) Mol. Ecol , vol.25 , pp. 185-202
    • Jones, M.R.1    Good, J.M.2
  • 56
    • 34548587106 scopus 로고    scopus 로고
    • A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation
    • Joost, S., Bonin, A., Bruford, M. W., Després, L., Conord, C., Erhardt, G., et al. (2007). A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation. Mol. Ecol. 16, 3955-3969. doi: 10.1111/j.1365-294X.2007.03442.x
    • (2007) Mol. Ecol , vol.16 , pp. 3955-3969
    • Joost, S.1    Bonin, A.2    Bruford, M.W.3    Després, L.4    Conord, C.5    Erhardt, G.6
  • 57
    • 84880144875 scopus 로고    scopus 로고
    • Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics
    • Joost, S., Vuilleumier, S., Jensen, J. D., Schoville, S., Leempoel, K., Stucki, S., et al. (2013). Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics. Mol. Ecol. 22, 3659-3665. doi: 10.1111/mec.12352
    • (2013) Mol. Ecol , vol.22 , pp. 3659-3665
    • Joost, S.1    Vuilleumier, S.2    Jensen, J.D.3    Schoville, S.4    Leempoel, K.5    Stucki, S.6
  • 58
    • 0001358930 scopus 로고
    • The stepping stone model of population structure and the decrease of genetic correlation with distance
    • Kimura, M., and Weiss, G. H. (1964). The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49, 561-576
    • (1964) Genetics , vol.49 , pp. 561-576
    • Kimura, M.1    Weiss, G.H.2
  • 59
    • 79251557454 scopus 로고    scopus 로고
    • PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals
    • Kofler, R., Orozco-terWengel, P., De Maio, N., Pandey, R. V., Nolte, V., Futschik, A., et al. (2011). PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. PLoS ONE 6:e15925. doi: 10.1371/journal.pone.0015925
    • (2011) PLoS ONE , vol.6
    • Kofler, R.1    Orozco-terWengel, P.2    De Maio, N.3    Pandey, R.V.4    Nolte, V.5    Futschik, A.6
  • 60
    • 85031695851 scopus 로고    scopus 로고
    • Simple rules for an efficient use of geographic information systems in molecular ecology
    • Leempoel, K., Duruz, S., Rochat, E., Widmer, I., Orozco-terWengel, P., and Joost, S. (2017). Simple rules for an efficient use of geographic information systems in molecular ecology. Front. Ecol. Evol. 5:33. doi: 10.3389/fevo.2017.00033
    • (2017) Front. Ecol. Evol , vol.5 , pp. 33
    • Leempoel, K.1    Duruz, S.2    Rochat, E.3    Widmer, I.4    Orozco-terWengel, P.5    Joost, S.6
  • 61
    • 84968845840 scopus 로고    scopus 로고
    • Multi-taxa integrated landscape genetics for zoonotic infectious diseases: deciphering variables influencing disease emergence
    • Leo, S. S., Gonzalez, A., and Millien, V. (2016). Multi-taxa integrated landscape genetics for zoonotic infectious diseases: deciphering variables influencing disease emergence. Genome 59, 349-361. doi: 10.1139/gen-2016-0039
    • (2016) Genome , vol.59 , pp. 349-361
    • Leo, S.S.1    Gonzalez, A.2    Millien, V.3
  • 62
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin, R. C., and Krakauer, J. (1973). Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74, 175-195
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.C.1    Krakauer, J.2
  • 63
    • 85020265907 scopus 로고    scopus 로고
    • Composite measures of selection can improve the signal-to-noise ratio in genome scans
    • Lotterhos, K. E., Card, D. C., Schaal, S. M., Wang, L., Collins, C., and Verity, B. (2017). Composite measures of selection can improve the signal-to-noise ratio in genome scans. Methods Ecol. and Evol. 8, 717-727. doi: 10.1111/2041-210X.12774
    • (2017) Methods Ecol. and Evol , vol.8 , pp. 717-727
    • Lotterhos, K.E.1    Card, D.C.2    Schaal, S.M.3    Wang, L.4    Collins, C.5    Verity, B.6
  • 64
    • 84899624756 scopus 로고    scopus 로고
    • Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests
    • Lotterhos, K. E., and Whitlock, M. C. (2014). Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests. Mol. Ecol. 23, 2178-2192. doi: 10.1111/mec.12725
    • (2014) Mol. Ecol , vol.23 , pp. 2178-2192
    • Lotterhos, K.E.1    Whitlock, M.C.2
  • 65
    • 84923541687 scopus 로고    scopus 로고
    • The relative power of genome scans to detect local adaptation depends on sampling design and statistical method
    • Lotterhos, K. E., and Whitlock, M. C. (2015). The relative power of genome scans to detect local adaptation depends on sampling design and statistical method. Mol. Ecol. 24, 1031-1046. doi: 10.1111/mec.13100
    • (2015) Mol. Ecol , vol.24 , pp. 1031-1046
    • Lotterhos, K.E.1    Whitlock, M.C.2
  • 66
    • 85043498513 scopus 로고    scopus 로고
    • Responsible RAD: striving for best practices in population genomic studies of adaptation
    • Lowry, D. B., Hoban, S., Kelley, J. L., Lotterhos, K. E., Reed, L. K., Antolin, M. F., et al. (2017). Responsible RAD: striving for best practices in population genomic studies of adaptation. Mol. Ecol. Res. 17, 366-369. doi: 10.1111/1755-0998.12677
    • (2017) Mol. Ecol. Res , vol.17 , pp. 366-369
    • Lowry, D.B.1    Hoban, S.2    Kelley, J.L.3    Lotterhos, K.E.4    Reed, L.K.5    Antolin, M.F.6
  • 67
    • 77957269964 scopus 로고    scopus 로고
    • Landscape evolutionary genomics
    • Lowry, D. B. (2010). Landscape evolutionary genomics. Biol. Lett. 6, 502-504
    • (2010) Biol. Lett , vol.6 , pp. 502-504
    • Lowry, D.B.1
  • 68
    • 0345304399 scopus 로고    scopus 로고
    • The power and promise of population genomics: from genotyping to genome typing
    • Luikart, G., England, P. R., Tallmon, D., Jordan, S., and Taberlet, P. (2003). The power and promise of population genomics: from genotyping to genome typing. Nat. Rev. Genet. 4, 981-994. doi: 10.1038/nrg1226
    • (2003) Nat. Rev. Genet , vol.4 , pp. 981-994
    • Luikart, G.1    England, P.R.2    Tallmon, D.3    Jordan, S.4    Taberlet, P.5
  • 69
    • 84945480966 scopus 로고    scopus 로고
    • Properties of different selection signature statistics and a new strategy for combining them
    • Ma, Y., Ding, X., Qanbari, S., Weigend, S., Zhang, Q., and Simianer, H. (2015). Properties of different selection signature statistics and a new strategy for combining them. Heredity 115:5. doi: 10.1038/hdy.2015.42
    • (2015) Heredity , vol.115 , pp. 5
    • Ma, Y.1    Ding, X.2    Qanbari, S.3    Weigend, S.4    Zhang, Q.5    Simianer, H.6
  • 70
    • 84969981495 scopus 로고    scopus 로고
    • Environmental correlation analysis for genes associated with protection against malaria
    • Mackinnon, M. J., Ndila, C., Uyoga, S., Macharia, A., Snow, R. W., Band, G., et al. (2016). Environmental correlation analysis for genes associated with protection against malaria. Mol. Biol. Evol. 33, 1188-1204. doi: 10.1093/molbev/msw004
    • (2016) Mol. Biol. Evol , vol.33 , pp. 1188-1204
    • Mackinnon, M.J.1    Ndila, C.2    Uyoga, S.3    Macharia, A.4    Snow, R.W.5    Band, G.6
  • 71
    • 84884354428 scopus 로고    scopus 로고
    • Ten years of landscape genetics
    • Manel, S., and Holderegger, R. (2013). Ten years of landscape genetics. Trends Ecol. Evol. 28, 614-621. doi: 10.1016/j.tree.2013.05.012
    • (2013) Trends Ecol. Evol , vol.28 , pp. 614-621
    • Manel, S.1    Holderegger, R.2
  • 72
    • 77956087880 scopus 로고    scopus 로고
    • Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field
    • Manel, S., Joost, S., Epperson, B. K., Holderegger, R., Storfer, A., Rosenberg, M. S., et al. (2010). Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field. Mol. Ecol. 19, 3760-3772. doi: 10.1111/j.1365-294X.2010.04717.x
    • (2010) Mol. Ecol , vol.19 , pp. 3760-3772
    • Manel, S.1    Joost, S.2    Epperson, B.K.3    Holderegger, R.4    Storfer, A.5    Rosenberg, M.S.6
  • 73
    • 0037376204 scopus 로고    scopus 로고
    • Landscape genetics: combining landscape ecology and population genetics
    • Manel, S., Schwartz, M. K., Luikart, G., and Taberlet, P. (2003). Landscape genetics: combining landscape ecology and population genetics. Trends Ecol. Evol. 18, 189-197. doi: 10.1016/S0169-5347(03)00008-9
    • (2003) Trends Ecol. Evol , vol.18 , pp. 189-197
    • Manel, S.1    Schwartz, M.K.2    Luikart, G.3    Taberlet, P.4
  • 74
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H., and Kreitman, M. (1991). Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654. doi: 10.1038/351652a0
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 75
    • 33750584310 scopus 로고    scopus 로고
    • Isolation by resistance
    • McRae, B. H. (2006). Isolation by resistance. Evolution 60, 1551-1561. doi: 10.1111/j.0014-3820.2006.tb00500.x
    • (2006) Evolution , vol.60 , pp. 1551-1561
    • McRae, B.H.1
  • 76
    • 0018120521 scopus 로고
    • A diffusion model for geographically structured populations
    • Nagylaki, T. (1978). A diffusion model for geographically structured populations. J. Math. Biol. 64, 375-382. doi: 10.1007/BF02463002
    • (1978) J. Math. Biol , vol.64 , pp. 375-382
    • Nagylaki, T.1
  • 77
    • 84926996268 scopus 로고    scopus 로고
    • Towards the identification of the loci of adaptive evolution
    • Pardo-Diaz, C., Salazar, C., and Jiggins, C. D. (2015). Towards the identification of the loci of adaptive evolution. Methods Ecol. Evol. 6, 445-464. doi: 10.1111/2041-210X.12324
    • (2015) Methods Ecol. Evol , vol.6 , pp. 445-464
    • Pardo-Diaz, C.1    Salazar, C.2    Jiggins, C.D.3
  • 78
    • 84866933213 scopus 로고    scopus 로고
    • A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans
    • Pavlidis, P., Jensen, J. D., Stephan, W., and Stamatakis, A. (2012). A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Mol. Biol. Evol. 29, 3237-3248. doi: 10.1093/molbev/mss136
    • (2012) Mol. Biol. Evol , vol.29 , pp. 3237-3248
    • Pavlidis, P.1    Jensen, J.D.2    Stephan, W.3    Stamatakis, A.4
  • 79
    • 77956579317 scopus 로고    scopus 로고
    • Comparing three different methods to detect selective loci using dominant markers
    • Pérez-Figueroa, A., García-Pereira, M. J., Saura, M., Rolán-Alvarez, E., and Caballero, A. (2010). Comparing three different methods to detect selective loci using dominant markers. J. Evol. Biol. 23, 2267-2276. doi: 10.1111/j.1420-9101.2010.02093.x
    • (2010) J. Evol. Biol , vol.23 , pp. 2267-2276
    • Pérez-Figueroa, A.1    García-Pereira, M.J.2    Saura, M.3    Rolán-Alvarez, E.4    Caballero, A.5
  • 80
    • 33847137308 scopus 로고    scopus 로고
    • Starch fossils and the domestication and dispersal of chili peppers (Capsicum spp
    • Perry, L., Dickau, R., Zarrillo, S., Holst, I., Pearsall, D. M., Piperno, D. R., et al. (2007). Starch fossils and the domestication and dispersal of chili peppers (Capsicum spp. L.) in the Americas. Science 315, 986-988. doi: 10.1126/science.1136914
    • (2007) L.) in the Americas. Science , vol.315 , pp. 986-988
    • Perry, L.1    Dickau, R.2    Zarrillo, S.3    Holst, I.4    Pearsall, D.M.5    Piperno, D.R.6
  • 81
    • 84949595494 scopus 로고    scopus 로고
    • Visualizing spatial population structure with estimated effective migration surfaces
    • Petkova, D., Novembre, J., and Stephens, M. (2016). Visualizing spatial population structure with estimated effective migration surfaces. Nat. Genet. 48:94. doi: 10.1038/ng.3464
    • (2016) Nat. Genet , vol.48 , pp. 94
    • Petkova, D.1    Novembre, J.2    Stephens, M.3
  • 82
    • 77954554418 scopus 로고    scopus 로고
    • Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina
    • Poncet, B. N., Herrmann, D., Gugerli, F., Taberlet, P., Holderegger, R., Gielly, L., et al. (2010). Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Mol. Ecol. 19, 2896-2907. doi: 10.1111/j.1365-294x.2010.04696.x
    • (2010) Mol. Ecol , vol.19 , pp. 2896-2907
    • Poncet, B.N.1    Herrmann, D.2    Gugerli, F.3    Taberlet, P.4    Holderegger, R.5    Gielly, L.6
  • 83
    • 77956885609 scopus 로고    scopus 로고
    • Adaptation-not by sweeps alone
    • Pritchard, J. K., and Di Rienzo, A. (2010). Adaptation-not by sweeps alone. Nat. Rev. Gen. 11:665. doi: 10.1038/nrg2880
    • (2010) Nat. Rev. Gen , vol.11 , pp. 665
    • Pritchard, J.K.1    Di Rienzo, A.2
  • 84
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J. K., Stephens, M., and Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155, 945-959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 85
    • 84902485214 scopus 로고    scopus 로고
    • fastSTRUCTURE: variational inference of population structure in large SNP datasets
    • Raj, A., Stephens, M., and Pritchard, J. K. (2014). fastSTRUCTURE: variational inference of population structure in large SNP datasets. Genetics 114:164350. doi: 10.1534/genetics.114.164350
    • (2014) Genetics , vol.114
    • Raj, A.1    Stephens, M.2    Pritchard, J.K.3
  • 86
    • 84940103846 scopus 로고    scopus 로고
    • A practical guide to environmental association analysis in landscape genomics
    • Rellstab, C., Gugerli, F., Eckert, A. J., Hancock, A. M., and Holderegger, R. (2015). A practical guide to environmental association analysis in landscape genomics. Mol. Ecol. 24, 4348-4370. doi: 10.1111/mec.13322
    • (2015) Mol. Ecol , vol.24 , pp. 4348-4370
    • Rellstab, C.1    Gugerli, F.2    Eckert, A.J.3    Hancock, A.M.4    Holderegger, R.5
  • 87
    • 84998773710 scopus 로고    scopus 로고
    • Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions
    • Rellstab, C., Zoller, S., Walthert, L., Lesur, I., Pluess, A. R., Graf, R., et al. (2016). Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions. Mol. Ecol. 25, 5907-5924. doi: 10.1111/mec.13889
    • (2016) Mol. Ecol , vol.25 , pp. 5907-5924
    • Rellstab, C.1    Zoller, S.2    Walthert, L.3    Lesur, I.4    Pluess, A.R.5    Graf, R.6
  • 88
    • 0021038163 scopus 로고
    • Estimation of the coancestry coefficient: basis for a short-term genetic distance
    • Reynolds, J., Weir, B. S., and Cockerham, C. C. (1983). Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics 105, 767-779
    • (1983) Genetics , vol.105 , pp. 767-779
    • Reynolds, J.1    Weir, B.S.2    Cockerham, C.C.3
  • 89
    • 84896716001 scopus 로고    scopus 로고
    • Microgeographic adaptation and the spatial scale of evolution
    • Richardson, J. L., Urban, M. C., Bolnick, D. I., and Skelly, D. K. (2014). Microgeographic adaptation and the spatial scale of evolution. Trends Ecol. Evol. 29, 165-176. doi: 10.1016/j.tree.2014.01.002
    • (2014) Trends Ecol. Evol , vol.29 , pp. 165-176
    • Richardson, J.L.1    Urban, M.C.2    Bolnick, D.I.3    Skelly, D.K.4
  • 90
    • 84855258100 scopus 로고    scopus 로고
    • The QTN program and the alleles that matter for evolution: all that's gold does not glitter
    • Rockman, M. V. (2012). The QTN program and the alleles that matter for evolution: all that's gold does not glitter. Evol. Int. J. Orgn. Evol. 66, 1-17. doi: 10.1111/j.1558-5646.2011.01486.x
    • (2012) Evol. Int. J. Orgn. Evol , vol.66 , pp. 1-17
    • Rockman, M.V.1
  • 91
    • 84908150953 scopus 로고    scopus 로고
    • Sequencing pools of individuals-mining genome-wide polymorphism data without big funding
    • Schlötterer, C., Tobler, R., Kofler, R., and Nolte, V. (2014). Sequencing pools of individuals-mining genome-wide polymorphism data without big funding. Nat. Rev. Genet. 15, 749-763. doi: 10.1038/nrg3803
    • (2014) Nat. Rev. Genet , vol.15 , pp. 749-763
    • Schlötterer, C.1    Tobler, R.2    Kofler, R.3    Nolte, V.4
  • 93
    • 85041343127 scopus 로고    scopus 로고
    • A comparison of regression methods for model selection in individual-based landscape genetic analysis
    • Shirk, A. J., Landguth, E. L., and Cushman, S. A. (2017). A comparison of regression methods for model selection in individual-based landscape genetic analysis. Mol. Ecol. Res. 8, 55-67. doi: 10.1111/1755-0998.12709
    • (2017) Mol. Ecol. Res , vol.8 , pp. 55-67
    • Shirk, A.J.1    Landguth, E.L.2    Cushman, S.A.3
  • 94
    • 84945436989 scopus 로고    scopus 로고
    • Landscape genomics of Sphaeralcea ambigua in the Mojave Desert: a multivariate, spatially-explicit approach to guide ecological restoration
    • Shryock, D. F., Havrilla, C. A., DeFalco, L. A., Esque, T. C., Custer, N. A., and Wood, T. E. (2015). Landscape genomics of Sphaeralcea ambigua in the Mojave Desert: a multivariate, spatially-explicit approach to guide ecological restoration. Conserv. Genet. 16, 1303-1317. doi: 10.1007/s10592-015-0741-1
    • (2015) Conserv. Genet , vol.16 , pp. 1303-1317
    • Shryock, D.F.1    Havrilla, C.A.2    DeFalco, L.A.3    Esque, T.C.4    Custer, N.A.5    Wood, T.E.6
  • 95
    • 77954319663 scopus 로고    scopus 로고
    • Genetic evidence for high-altitude adaptation in Tibet
    • Simonson, T. S., Yang, Y., Huff, C. D., Yun, H., Qin, G., Witherspoon, D. J., Bai, Z., et al. (2010). Genetic evidence for high-altitude adaptation in Tibet. Science 329, 72-75. doi: 10.1126/science.1189406
    • (2010) Science , vol.329 , pp. 72-75
    • Simonson, T.S.1    Yang, Y.2    Huff, C.D.3    Yun, H.4    Qin, G.5    Witherspoon, D.J.6    Bai, Z.7
  • 96
    • 84866878555 scopus 로고    scopus 로고
    • Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions
    • Skinner, M. K., Mohan, M., Haque, M. M., Zhang, B., and Savenkova, M. I. (2012). Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions. Genome Biol. 13:R91. doi: 10.1186/gb-2012-13-10-r91
    • (2012) Genome Biol , vol.13 , pp. R91
    • Skinner, M.K.1    Mohan, M.2    Haque, M.M.3    Zhang, B.4    Savenkova, M.I.5
  • 97
    • 0023159436 scopus 로고
    • Gene flow and the geographical structure of natural populations
    • Slatkin, M. (1987). Gene flow and the geographical structure of natural populations. Science 236, 787-792. doi: 10.1126/science.3576198
    • (1987) Science , vol.236 , pp. 787-792
    • Slatkin, M.1
  • 98
    • 84955138961 scopus 로고    scopus 로고
    • Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata
    • Sork, V. L., Squire, K., Gugger, P. F., Steele, S. E., Levy, E. D., and Eckert, A. J. (2016). Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata. Am. J. Bot. 103, 33-46. doi: 10.3732/ajb.1500162
    • (2016) Am. J. Bot , vol.103 , pp. 33-46
    • Sork, V.L.1    Squire, K.2    Gugger, P.F.3    Steele, S.E.4    Levy, E.D.5    Eckert, A.J.6
  • 99
    • 84954076003 scopus 로고    scopus 로고
    • Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation
    • Stephan, W. (2015). Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation. Mol. Evol. 25, 76-88. doi: 10.1111/mec.13288
    • (2015) Mol. Evol , vol.25 , pp. 76-88
    • Stephan, W.1
  • 100
    • 51249106485 scopus 로고    scopus 로고
    • The loci of evolution: how predictable is genetic evolution?
    • Stern, D. L., and Orgogozo, V. (2008). The loci of evolution: how predictable is genetic evolution? Evolution 62, 2155-2177. doi: 10.1111/j.1558-5646.2008.00450.x
    • (2008) Evolution , vol.62 , pp. 2155-2177
    • Stern, D.L.1    Orgogozo, V.2
  • 101
    • 38549103015 scopus 로고    scopus 로고
    • Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits
    • Stinchcombe, J. R., and Hoekstra, H. E. (2008). Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity 100, 158-170. doi: 10.1038/sj.hdy.6800937
    • (2008) Heredity , vol.100 , pp. 158-170
    • Stinchcombe, J.R.1    Hoekstra, H.E.2
  • 102
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. D., and Tibshirani, R. (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. U.S.A. 100, 9440-9445. doi: 10.1073/pnas.1530509100
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 103
    • 85043511386 scopus 로고    scopus 로고
    • Oxford Bibliographies in Evolutionary Biology. Oxford, UK: Oxford University Press
    • Storfer, A. (2015). Landscape Genetics. Oxford Bibliographies in Evolutionary Biology. Oxford, UK: Oxford University Press
    • (2015) Landscape Genetics
    • Storfer, A.1
  • 104
  • 106
    • 85006098450 scopus 로고    scopus 로고
    • High performance computation of landscape genomic models including local indicators of spatial simulation
    • Stucki, S., Orozco-terWengel, P., Forester, B. R., Duruz, D., Colli, L., et al. (2016). High performance computation of landscape genomic models including local indicators of spatial simulation. Mol. Ecol. Res. 17, 1072-1089. doi: 10.1111/1755-0998.12629
    • (2016) Mol. Ecol. Res , vol.17 , pp. 1072-1089
    • Stucki, S.1    Orozco-terWengel, P.2    Forester, B.R.3    Duruz, D.4    Colli, L.5
  • 107
    • 84923039277 scopus 로고    scopus 로고
    • The genetic basis of population fecundity prediction across multiple field populations of Nilaparvata lugens
    • Sun, Z. X., Zhai, Y. F., Zhang, J. Q., Kang, K., Cai, J. H., Fu, Y., et al. (2015). The genetic basis of population fecundity prediction across multiple field populations of Nilaparvata lugens. Mol. Ecol. 24, 771-784. doi: 10.1111/mec.13069
    • (2015) Mol. Ecol , vol.24 , pp. 771-784
    • Sun, Z.X.1    Zhai, Y.F.2    Zhang, J.Q.3    Kang, K.4    Cai, J.H.5    Fu, Y.6
  • 108
    • 0022850455 scopus 로고
    • Genetic analysis of a hybrid zone between the fire-bellied toads, Bombina bombina and B. variegata, near Cracow in southern Poland
    • Szymura, J. M., and Barton, N. H. (1986). Genetic analysis of a hybrid zone between the fire-bellied toads, Bombina bombina and B. variegata, near Cracow in southern Poland. Evolution 40, 1141-1159
    • (1986) Evolution , vol.40 , pp. 1141-1159
    • Szymura, J.M.1    Barton, N.H.2
  • 109
    • 0025956339 scopus 로고
    • The genetic structure of the hybrid zone between the fire-bellied toads Bombina bombina and B. variegata: comparisons between transects and between loci
    • Szymura, J. M., and Barton, N. H. (1991). The genetic structure of the hybrid zone between the fire-bellied toads Bombina bombina and B. variegata: comparisons between transects and between loci. Evolution 45, 237-261. doi: 10.1111/j.1558-5646.1991.tb04400.x
    • (1991) Evolution , vol.45 , pp. 237-261
    • Szymura, J.M.1    Barton, N.H.2
  • 110
    • 84912125056 scopus 로고    scopus 로고
    • Advances and limits of using population genetics to understand local adaptation
    • Tiffin, P., and Ross-Ibarra, J. (2014). Advances and limits of using population genetics to understand local adaptation. Trends Ecol. Evol. 29, 673-680. doi: 10.1016/j.tree.2014.10.004
    • (2014) Trends Ecol. Evol , vol.29 , pp. 673-680
    • Tiffin, P.1    Ross-Ibarra, J.2
  • 111
    • 84874415061 scopus 로고    scopus 로고
    • Rangewide landscape genetics of an endemic Pacific northwestern salamander
    • Trumbo, D. R., Spear, S. F., Baumsteiger, J., and Storfer, A. (2013). Rangewide landscape genetics of an endemic Pacific northwestern salamander. Mol. Ecol. 22, 1250-1266. doi: 10.1111/mec.12168
    • (2013) Mol. Ecol , vol.22 , pp. 1250-1266
    • Trumbo, D.R.1    Spear, S.F.2    Baumsteiger, J.3    Storfer, A.4
  • 112
    • 84984696266 scopus 로고    scopus 로고
    • minotaur: a platform for the analysis and visualization of multivariate results from genome scans with R Shiny
    • Verity, R., Collins, C., Card, D. C., Schaal, S. M., Wang, L., and Lotterhos, K. E. (2017). minotaur: a platform for the analysis and visualization of multivariate results from genome scans with R Shiny. Mol. Ecol. Res. 17, 33-43. doi: 10.1111/1755-0998.12579
    • (2017) Mol. Ecol. Res , vol.17 , pp. 33-43
    • Verity, R.1    Collins, C.2    Card, D.C.3    Schaal, S.M.4    Wang, L.5    Lotterhos, K.E.6
  • 113
    • 84889086364 scopus 로고    scopus 로고
    • Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation
    • Vincent, B., Dionne, M., Kent, M. P., Lien, S., and Bernatchez, L. (2013). Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation. Evolution 67, 3469-3487. doi: 10.1111/evo.12139
    • (2013) Evolution , vol.67 , pp. 3469-3487
    • Vincent, B.1    Dionne, M.2    Kent, M.P.3    Lien, S.4    Bernatchez, L.5
  • 114
    • 78650197952 scopus 로고    scopus 로고
    • A commentary on 'common SNPs explain a large proportion of the heritability for human height' by Yang et al (2010)
    • Visscher, P. M., Yang, J., and Goddard, M. E. (2010). A commentary on 'common SNPs explain a large proportion of the heritability for human height' by Yang et al. (2010). Twin Res. Hum. Genet. 13, 517-524. doi: 10.1375/twin.13.6.517
    • (2010) Twin Res. Hum. Genet , vol.13 , pp. 517-524
    • Visscher, P.M.1    Yang, J.2    Goddard, M.E.3
  • 115
    • 0034856602 scopus 로고    scopus 로고
    • Interpretation of variation across marker loci as evidence of selection
    • Vitalis, R., Dawson, K., and Boursot, P. (2001). Interpretation of variation across marker loci as evidence of selection. Genetics 158, 1811-1823
    • (2001) Genetics , vol.158 , pp. 1811-1823
    • Vitalis, R.1    Dawson, K.2    Boursot, P.3
  • 116
    • 84912064094 scopus 로고    scopus 로고
    • Isolation by environment
    • Wang, I. J., and Bradburd, G. S. (2014). Isolation by environment. Mol. Ecol. 23, 5649-5662. doi: 10.1016/s0160-4120(97)00049-4
    • (2014) Mol. Ecol , vol.23 , pp. 5649-5662
    • Wang, I.J.1    Bradburd, G.S.2
  • 117
    • 84870786590 scopus 로고    scopus 로고
    • Genome sequences of wild and domestic bactrian camels
    • Wang, Z., Ding, G., Chen, G., Sun, Y., Sun, Z., Zhang, H., et al. (2012). Genome sequences of wild and domestic bactrian camels. Nat. Comm. 3:1202. doi: 10.1038/ncomms2192
    • (2012) Nat. Comm , vol.3 , pp. 1202
    • Wang, Z.1    Ding, G.2    Chen, G.3    Sun, Y.4    Sun, Z.5    Zhang, H.6
  • 118
    • 84872686962 scopus 로고    scopus 로고
    • Founder takes all: density-dependent processes structure biodiversity
    • Waters, J. M., Fraser, C. I., and Hewitt, G. M. (2013). Founder takes all: density-dependent processes structure biodiversity. Trends. Ecol. Evol. 28, 78-85. doi: 10.1016/j.tree.2012.08.024
    • (2013) Trends. Ecol. Evol , vol.28 , pp. 78-85
    • Waters, J.M.1    Fraser, C.I.2    Hewitt, G.M.3
  • 119
    • 84954076984 scopus 로고    scopus 로고
    • The role of parasite-driven selection in shaping landscape genomic structure in red grouse (Lagopus lagopus scotica)
    • Wenzel, M. A., Douglas, A., James, M. C., Redpath, S. M., and Piertney, S. B. (2016). The role of parasite-driven selection in shaping landscape genomic structure in red grouse (Lagopus lagopus scotica). Mol. Ecol. 25, 324-341. doi: 10.1111/mec.13473
    • (2016) Mol. Ecol , vol.25 , pp. 324-341
    • Wenzel, M.A.1    Douglas, A.2    James, M.C.3    Redpath, S.M.4    Piertney, S.B.5
  • 120
    • 84943793570 scopus 로고    scopus 로고
    • Reliable detection of loci responsible for local adaptation: inference of a null model through trimming the distribution of FST
    • Whitlock, M. C., and Lotterhos, K. E. (2015). Reliable detection of loci responsible for local adaptation: inference of a null model through trimming the distribution of FST. Am. Nat. 186, S24-S36. doi: 10.1086/682949
    • (2015) Am. Nat , vol.186 , pp. S24-S36
    • Whitlock, M.C.1    Lotterhos, K.E.2
  • 121
    • 84862832570 scopus 로고    scopus 로고
    • Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits
    • Yang, J., Ferreira, T., Morris, A. P., Medland, S. E., Madden, P. A., Heath, A. C., et al. (2012). Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits. Nat. Genet. 44, 369-375. doi: 10.1038/ng.2213
    • (2012) Nat. Genet , vol.44 , pp. 369-375
    • Yang, J.1    Ferreira, T.2    Morris, A.P.3    Medland, S.E.4    Madden, P.A.5    Heath, A.C.6
  • 122
    • 77957232748 scopus 로고    scopus 로고
    • Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
    • Yang, T. P., Beazley, C., Montgomery, S. B., Dimas, A. S., Gutierrez-Arcelus, M., Stranger, B. E., et al. (2010). Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. Bioinformatics. 26, 2474-2476. doi: 10.1093/bioinformatics/btq452
    • (2010) Bioinformatics , vol.26 , pp. 2474-2476
    • Yang, T.P.1    Beazley, C.2    Montgomery, S.B.3    Dimas, A.S.4    Gutierrez-Arcelus, M.5    Stranger, B.E.6
  • 123
    • 84863003734 scopus 로고    scopus 로고
    • Genome-wide efficient mixed-model analysis for association studies
    • Zhou, X., and Stephens, M. (2012). Genome-wide efficient mixed-model analysis for association studies. Nat. Genet. 44, 821-824. doi: 10.1038/ng.2310
    • (2012) Nat. Genet , vol.44 , pp. 821-824
    • Zhou, X.1    Stephens, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.