메뉴 건너뛰기




Volumn 27, Issue 11, 2017, Pages 1895-1903

Detection of long repeat expansions from PCR-free whole-genome sequence data

(44)  Dolzhenko, Egor a   van Vugt, Joke J F A b   Shaw, Richard J c,d   Bekritsky, Mitchell A c   Van Blitterswijk, Marka e   Narzisi, Giuseppe f   Ajay, Subramanian S a   Rajan, Vani a   Lajoie, Bryan R a   Johnson, Nathan H a   Kingsbury, Zoya c   Humphray, Sean J c   Schellevis, Raymond D b   Brands, William J b   Baker, Matt e   Rademakers, Rosa e   Kooyman, Maarten g   Tazelaar, Gijs H P b   van Es, Michael A b   McLaughlin, Russell h,i   more..


Author keywords

[No Author keywords available]

Indexed keywords

GUANINE NUCLEOTIDE EXCHANGE C9ORF72; C9ORF72 PROTEIN, HUMAN; REPETITIVE DNA;

EID: 85042236758     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.225672.117     Document Type: Article
Times cited : (237)

References (35)
  • 2
    • 84930439209 scopus 로고    scopus 로고
    • The precision medicine initiative: A new national effort
    • Ashley EA. 2015. The precision medicine initiative: a new national effort. JAMA 313: 2119–2120.
    • (2015) JAMA , vol.313 , pp. 2119-2120
    • Ashley, E.A.1
  • 3
    • 84982270082 scopus 로고    scopus 로고
    • Towards precision medicine
    • Ashley EA. 2016. Towards precision medicine. Nat Rev Genet 17: 507–522.
    • (2016) Nat Rev Genet , vol.17 , pp. 507-522
    • Ashley, E.A.1
  • 4
    • 85017189208 scopus 로고    scopus 로고
    • HALC: High throughput algorithm for long read error correction
    • Bao E, Lan L. 2017. HALC: high throughput algorithm for long read error correction. BMC Bioinformatics 18: 204.
    • (2017) BMC Bioinformatics , vol.18 , pp. 204
    • Bao, E.1    Lan, L.2
  • 5
    • 84861548193 scopus 로고    scopus 로고
    • Summarizing and correcting the GC content bias in high-throughput sequencing
    • Benjamini Y, Speed TP. 2012. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res 40: e72.
    • (2012) Nucleic Acids Res , vol.40 , pp. e72
    • Benjamini, Y.1    Speed, T.P.2
  • 6
    • 84875840045 scopus 로고    scopus 로고
    • Simultaneous and independent detection of C9ORF72 alleles with low and high number of GGGGCC repeats using an optimised protocol of Southern blot hybrid-isation
    • Buchman VL, Cooper-Knock J, Connor-Robson N, Higginbottom A, Kirby J, Razinskaya OD, Ninkina N, Shaw PJ. 2013. Simultaneous and independent detection of C9ORF72 alleles with low and high number of GGGGCC repeats using an optimised protocol of Southern blot hybrid-isation. Mol Neurodegener 8: 12.
    • (2013) Mol Neurodegener , vol.8 , pp. 12
    • Buchman, V.L.1    Cooper-Knock, J.2    Connor-Robson, N.3    Higginbottom, A.4    Kirby, J.5    Razinskaya, O.D.6    Ninkina, N.7    Shaw, P.J.8
  • 13
    • 25844487226 scopus 로고    scopus 로고
    • Diseases of unstable repeat expansion: Mechanisms and common principles
    • Gatchel JR, Zoghbi HY. 2005. Diseases of unstable repeat expansion: mechanisms and common principles. Nat Rev Genet 6: 743–755.
    • (2005) Nat Rev Genet , vol.6 , pp. 743-755
    • Gatchel, J.R.1    Zoghbi, H.Y.2
  • 16
    • 84861861291 scopus 로고    scopus 로고
    • LobSTR: A short tandem repeat profiler for personal genomes
    • Gymrek M, Golan D, Rosset S, Erlich Y. 2012. lobSTR: a short tandem repeat profiler for personal genomes. Genome Res 22: 1154–1162.
    • (2012) Genome Res , vol.22 , pp. 1154-1162
    • Gymrek, M.1    Golan, D.2    Rosset, S.3    Erlich, Y.4
  • 17
    • 78751631879 scopus 로고    scopus 로고
    • FMR1 premutation carrier frequency in patients undergoing routine population-based carrier screening: Insights into the prevalence of fragile X syndrome, fragile X-associated tremor/ataxia syndrome, and fragile X-associated primary ovarian insufficiency in the United States
    • Hantash FM, Goos DM, Crossley B, Anderson B, Zhang K, Sun W, Strom CM. 2011. FMR1 premutation carrier frequency in patients undergoing routine population-based carrier screening: insights into the prevalence of fragile X syndrome, fragile X-associated tremor/ataxia syndrome, and fragile X-associated primary ovarian insufficiency in the United States. Genet Med 13: 39–45.
    • (2011) Genet Med , vol.13 , pp. 39-45
    • Hantash, F.M.1    Goos, D.M.2    Crossley, B.3    Anderson, B.4    Zhang, K.5    Sun, W.6    Strom, C.M.7
  • 18
    • 84856246802 scopus 로고    scopus 로고
    • De novo assembly and genotyping of variants using colored de Bruijn graphs
    • Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G. 2012. De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat Genet 44: 226–232.
    • (2012) Nat Genet , vol.44 , pp. 226-232
    • Iqbal, Z.1    Caccamo, M.2    Turner, I.3    Flicek, P.4    McVean, G.5
  • 19
    • 57449090215 scopus 로고    scopus 로고
    • Clinical significance of tri-nu-cleotide repeats in Fragile X testing: A clarification of American College of Medical Genetics guidelines
    • Kronquist KE, Sherman SL, Spector EB. 2008. Clinical significance of tri-nu-cleotide repeats in Fragile X testing: a clarification of American College of Medical Genetics guidelines. Genet Med 10: 845–847.
    • (2008) Genet Med , vol.10 , pp. 845-847
    • Kronquist, K.E.1    Sherman, S.L.2    Spector, E.B.3
  • 20
    • 84947756393 scopus 로고    scopus 로고
    • FermiKit: Assembly-based variant calling for Illumina resequencing data
    • Li H. 2015. FermiKit: assembly-based variant calling for Illumina resequencing data. Bioinformatics 31: 3694–3696.
    • (2015) Bioinformatics , vol.31 , pp. 3694-3696
    • Li, H.1
  • 21
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows–Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics 25: 1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 24
    • 84940479498 scopus 로고    scopus 로고
    • The DNA of a nation
    • Marx V. 2015. The DNA of a nation. Nature 524: 503–505.
    • (2015) Nature , vol.524 , pp. 503-505
    • Marx, V.1
  • 25
    • 77958109197 scopus 로고    scopus 로고
    • Mechanisms of trinucleotide repeat instability during human development
    • McMurray CT. 2010. Mechanisms of trinucleotide repeat instability during human development. Nat Rev Genet 11: 786–799.
    • (2010) Nat Rev Genet , vol.11 , pp. 786-799
    • McMurray, C.T.1
  • 27
    • 84943608697 scopus 로고    scopus 로고
    • The challenge of small-scale repeats for indel discovery
    • Narzisi G, Schatz MC. 2015. The challenge of small-scale repeats for indel discovery. Front Bioeng Biotechnol 3: 8.
    • (2015) Front Bioeng Biotechnol , vol.3 , pp. 8
    • Narzisi, G.1    Schatz, M.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.