-
1
-
-
84901475610
-
A blinded international study on the reliability of genetic testing for GGGGCC-repeat expansions in C9orf72 reveals marked differences in results among 14 laboratories
-
Akimoto C, Volk AE, van Blitterswijk M, Van den Broeck M, Leblond CS, Lumbroso S, Camu W, Neitzel B, Onodera O, van Rheenen W, et al. 2014. A blinded international study on the reliability of genetic testing for GGGGCC-repeat expansions in C9orf72 reveals marked differences in results among 14 laboratories. J Med Genet 51: 419–424.
-
(2014)
J Med Genet
, vol.51
, pp. 419-424
-
-
Akimoto, C.1
Volk, A.E.2
Van Blitterswijk, M.3
Van den Broeck, M.4
Leblond, C.S.5
Lumbroso, S.6
Camu, W.7
Neitzel, B.8
Onodera, O.9
Van Rheenen, W.10
-
2
-
-
84930439209
-
The precision medicine initiative: A new national effort
-
Ashley EA. 2015. The precision medicine initiative: a new national effort. JAMA 313: 2119–2120.
-
(2015)
JAMA
, vol.313
, pp. 2119-2120
-
-
Ashley, E.A.1
-
3
-
-
84982270082
-
Towards precision medicine
-
Ashley EA. 2016. Towards precision medicine. Nat Rev Genet 17: 507–522.
-
(2016)
Nat Rev Genet
, vol.17
, pp. 507-522
-
-
Ashley, E.A.1
-
4
-
-
85017189208
-
HALC: High throughput algorithm for long read error correction
-
Bao E, Lan L. 2017. HALC: high throughput algorithm for long read error correction. BMC Bioinformatics 18: 204.
-
(2017)
BMC Bioinformatics
, vol.18
, pp. 204
-
-
Bao, E.1
Lan, L.2
-
5
-
-
84861548193
-
Summarizing and correcting the GC content bias in high-throughput sequencing
-
Benjamini Y, Speed TP. 2012. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res 40: e72.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e72
-
-
Benjamini, Y.1
Speed, T.P.2
-
6
-
-
84875840045
-
Simultaneous and independent detection of C9ORF72 alleles with low and high number of GGGGCC repeats using an optimised protocol of Southern blot hybrid-isation
-
Buchman VL, Cooper-Knock J, Connor-Robson N, Higginbottom A, Kirby J, Razinskaya OD, Ninkina N, Shaw PJ. 2013. Simultaneous and independent detection of C9ORF72 alleles with low and high number of GGGGCC repeats using an optimised protocol of Southern blot hybrid-isation. Mol Neurodegener 8: 12.
-
(2013)
Mol Neurodegener
, vol.8
, pp. 12
-
-
Buchman, V.L.1
Cooper-Knock, J.2
Connor-Robson, N.3
Higginbottom, A.4
Kirby, J.5
Razinskaya, O.D.6
Ninkina, N.7
Shaw, P.J.8
-
7
-
-
84966658505
-
Manta: Rapid detection of structural variants and indels for germline and cancer sequencing applications
-
Chen X, Schulz-Trieglaff O, Shaw R, Barnes B, Schlesinger F, Källberg M, Cox AJ, Kruglyak S, Saunders CT. 2016. Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics 32: 1220–1222.
-
(2016)
Bioinformatics
, vol.32
, pp. 1220-1222
-
-
Chen, X.1
Schulz-Trieglaff, O.2
Shaw, R.3
Barnes, B.4
Schlesinger, F.5
Källberg, M.6
Cox, A.J.7
Kruglyak, S.8
Saunders, C.T.9
-
8
-
-
84939129835
-
Extending reference assembly models
-
Church DM, Schneider VA, Steinberg KM, Schatz MC, Quinlan AR, Chin CS, Kitts PA, Aken B, Marth GT, Hoffman MM, et al. 2015. Extending reference assembly models. Genome Biol 16: 13.
-
(2015)
Genome Biol
, vol.16
, pp. 13
-
-
Church, D.M.1
Schneider, V.A.2
Steinberg, K.M.3
Schatz, M.C.4
Quinlan, A.R.5
Chin, C.S.6
Kitts, P.A.7
Aken, B.8
Marth, G.T.9
Hoffman, M.M.10
-
9
-
-
80054832080
-
Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS
-
DeJesus-Hernandez M, Mackenzie IR, Boeve BF, Boxer AL, Baker M, Rutherford NJ, Nicholson AM, Finch NA, Flynn H, Adamson J, et al. 2011. Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS. Neuron 72: 245–256.
-
(2011)
Neuron
, vol.72
, pp. 245-256
-
-
DeJesus-Hernandez, M.1
Mackenzie, I.R.2
Boeve, B.F.3
Boxer, A.L.4
Baker, M.5
Rutherford, N.J.6
Nicholson, A.M.7
Finch, N.A.8
Flynn, H.9
Adamson, J.10
-
10
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491–498.
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
Del Angel, G.8
Rivas, M.A.9
Hanna, M.10
-
11
-
-
0029821176
-
Clinical and genetic abnormalities in patients with Friedreich’s ataxia
-
Dürr A, Cossee M, Agid Y, Campuzano V, Mignard C, Penet C, Mandel JL, Brice A, Koenig M. 1996. Clinical and genetic abnormalities in patients with Friedreich’s ataxia. N Engl J Med 335: 1169–1175.
-
(1996)
N Engl J Med
, vol.335
, pp. 1169-1175
-
-
Dürr, A.1
Cossee, M.2
Agid, Y.3
Campuzano, V.4
Mignard, C.5
Penet, C.6
Mandel, J.L.7
Brice, A.8
Koenig, M.9
-
12
-
-
85009151993
-
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
-
Eberle MA, Fritzilas E, Krusche P, Källberg M, Moore BL, Bekritsky MA, Iqbal Z, Chuang HY, Humphray SJ, Halpern AL, et al. 2017. A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree. Genome Res 27: 157–164.
-
(2017)
Genome Res
, vol.27
, pp. 157-164
-
-
Eberle, M.A.1
Fritzilas, E.2
Krusche, P.3
Källberg, M.4
Moore, B.L.5
Bekritsky, M.A.6
Iqbal, Z.7
Chuang, H.Y.8
Humphray, S.J.9
Halpern, A.L.10
-
13
-
-
25844487226
-
Diseases of unstable repeat expansion: Mechanisms and common principles
-
Gatchel JR, Zoghbi HY. 2005. Diseases of unstable repeat expansion: mechanisms and common principles. Nat Rev Genet 6: 743–755.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 743-755
-
-
Gatchel, J.R.1
Zoghbi, H.Y.2
-
14
-
-
83555166183
-
A C9orf72 promoter repeat expansion in a Flanders-Belgian cohort with disorders of the frontotemporal lobar degeneration-amyotrophic lateral sclerosis spectrum: A gene identification study
-
Gijselinck I, Van Langenhove T, van der Zee J, Sleegers K, Philtjens S, Kleinberger G, Janssens J, Bettens K, Van Cauwenberghe C, Pereson S, et al. 2012. A C9orf72 promoter repeat expansion in a Flanders-Belgian cohort with disorders of the frontotemporal lobar degeneration-amyotrophic lateral sclerosis spectrum: a gene identification study. Lancet Neurol 11: 54–65.
-
(2012)
Lancet Neurol
, vol.11
, pp. 54-65
-
-
Gijselinck, I.1
Van Langenhove, T.2
van der Zee, J.3
Sleegers, K.4
Philtjens, S.5
Kleinberger, G.6
Janssens, J.7
Bettens, K.8
Van Cauwenberghe, C.9
Pereson, S.10
-
15
-
-
84944704005
-
The C9orf72 repeat size correlates with onset age of disease, DNA methylation and transcriptional downregulation of the promoter
-
Gijselinck I, Van Mossevelde S, van der Zee J, Sieben A, Engelborghs S, De Bleecker J, Ivanoiu A, Deryck O, Edbauer D, Zhang M, et al. 2016. The C9orf72 repeat size correlates with onset age of disease, DNA methylation and transcriptional downregulation of the promoter. Mol Psychiatry 21: 1112–1124.
-
(2016)
Mol Psychiatry
, vol.21
, pp. 1112-1124
-
-
Gijselinck, I.1
Van Mossevelde, S.2
van der Zee, J.3
Sieben, A.4
Engelborghs, S.5
De Bleecker, J.6
Ivanoiu, A.7
Deryck, O.8
Edbauer, D.9
Zhang, M.10
-
16
-
-
84861861291
-
LobSTR: A short tandem repeat profiler for personal genomes
-
Gymrek M, Golan D, Rosset S, Erlich Y. 2012. lobSTR: a short tandem repeat profiler for personal genomes. Genome Res 22: 1154–1162.
-
(2012)
Genome Res
, vol.22
, pp. 1154-1162
-
-
Gymrek, M.1
Golan, D.2
Rosset, S.3
Erlich, Y.4
-
17
-
-
78751631879
-
FMR1 premutation carrier frequency in patients undergoing routine population-based carrier screening: Insights into the prevalence of fragile X syndrome, fragile X-associated tremor/ataxia syndrome, and fragile X-associated primary ovarian insufficiency in the United States
-
Hantash FM, Goos DM, Crossley B, Anderson B, Zhang K, Sun W, Strom CM. 2011. FMR1 premutation carrier frequency in patients undergoing routine population-based carrier screening: insights into the prevalence of fragile X syndrome, fragile X-associated tremor/ataxia syndrome, and fragile X-associated primary ovarian insufficiency in the United States. Genet Med 13: 39–45.
-
(2011)
Genet Med
, vol.13
, pp. 39-45
-
-
Hantash, F.M.1
Goos, D.M.2
Crossley, B.3
Anderson, B.4
Zhang, K.5
Sun, W.6
Strom, C.M.7
-
18
-
-
84856246802
-
De novo assembly and genotyping of variants using colored de Bruijn graphs
-
Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G. 2012. De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat Genet 44: 226–232.
-
(2012)
Nat Genet
, vol.44
, pp. 226-232
-
-
Iqbal, Z.1
Caccamo, M.2
Turner, I.3
Flicek, P.4
McVean, G.5
-
19
-
-
57449090215
-
Clinical significance of tri-nu-cleotide repeats in Fragile X testing: A clarification of American College of Medical Genetics guidelines
-
Kronquist KE, Sherman SL, Spector EB. 2008. Clinical significance of tri-nu-cleotide repeats in Fragile X testing: a clarification of American College of Medical Genetics guidelines. Genet Med 10: 845–847.
-
(2008)
Genet Med
, vol.10
, pp. 845-847
-
-
Kronquist, K.E.1
Sherman, S.L.2
Spector, E.B.3
-
20
-
-
84947756393
-
FermiKit: Assembly-based variant calling for Illumina resequencing data
-
Li H. 2015. FermiKit: assembly-based variant calling for Illumina resequencing data. Bioinformatics 31: 3694–3696.
-
(2015)
Bioinformatics
, vol.31
, pp. 3694-3696
-
-
Li, H.1
-
21
-
-
67649884743
-
Fast and accurate short read alignment with Burrows–Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics 25: 1754–1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
22
-
-
66449114324
-
SNP detection for massively parallel whole-genome resequencing
-
Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J. 2009. SNP detection for massively parallel whole-genome resequencing. Genome Res 19: 1124–1132.
-
(2009)
Genome Res
, vol.19
, pp. 1124-1132
-
-
Li, R.1
Li, Y.2
Fang, X.3
Yang, H.4
Wang, J.5
Kristiansen, K.6
Wang, J.7
-
23
-
-
84871392152
-
Sequencing the unse-quenceable: Expanded CGG-repeat alleles of the fragile X gene
-
Loomis EW, Eid JS, Peluso P, Yin J, Hickey L, Rank D, McCalmon S, Hagerman RJ, Tassone F, Hagerman PJ. 2013. Sequencing the unse-quenceable: expanded CGG-repeat alleles of the fragile X gene. Genome Res 23: 121–128.
-
(2013)
Genome Res
, vol.23
, pp. 121-128
-
-
Loomis, E.W.1
Eid, J.S.2
Peluso, P.3
Yin, J.4
Hickey, L.5
Rank, D.6
McCalmon, S.7
Hagerman, R.J.8
Tassone, F.9
Hagerman, P.J.10
-
24
-
-
84940479498
-
The DNA of a nation
-
Marx V. 2015. The DNA of a nation. Nature 524: 503–505.
-
(2015)
Nature
, vol.524
, pp. 503-505
-
-
Marx, V.1
-
25
-
-
77958109197
-
Mechanisms of trinucleotide repeat instability during human development
-
McMurray CT. 2010. Mechanisms of trinucleotide repeat instability during human development. Nat Rev Genet 11: 786–799.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 786-799
-
-
McMurray, C.T.1
-
27
-
-
84943608697
-
The challenge of small-scale repeats for indel discovery
-
Narzisi G, Schatz MC. 2015. The challenge of small-scale repeats for indel discovery. Front Bioeng Biotechnol 3: 8.
-
(2015)
Front Bioeng Biotechnol
, vol.3
, pp. 8
-
-
Narzisi, G.1
Schatz, M.C.2
-
28
-
-
84881018840
-
Isaac: Ultra-fast whole-genome secondary analysis on Illumina sequencing platforms
-
Raczy C, Petrovski R, Saunders CT, Chorny I, Kruglyak S, Margulies EH, Chuang HY, Källberg M, Kumar SA, Liao A, et al. 2013. Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. Bioinformatics 29: 2041–2043.
-
(2013)
Bioinformatics
, vol.29
, pp. 2041-2043
-
-
Raczy, C.1
Petrovski, R.2
Saunders, C.T.3
Chorny, I.4
Kruglyak, S.5
Margulies, E.H.6
Chuang, H.Y.7
Källberg, M.8
Kumar, S.A.9
Liao, A.10
-
29
-
-
80054837386
-
A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD
-
Renton AE, Majounie E, Waite A, Simón-Sánchez J, Rollinson S, Gibbs JR, Schymick JC, Laaksovirta H, van Swieten JC, Myllykangas L, et al. 2011. A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD. Neuron 72: 257–268.
-
(2011)
Neuron
, vol.72
, pp. 257-268
-
-
Renton, A.E.1
Majounie, E.2
Waite, A.3
Simón-Sánchez, J.4
Rollinson, S.5
Gibbs, J.R.6
Schymick, J.C.7
Laaksovirta, H.8
Van Swieten, J.C.9
Myllykangas, L.10
-
31
-
-
84964528782
-
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
-
Sović I, Šikic M, Wilm A, Fenlon SN, Chen S, Nagarajan N. 2016. Fast and sensitive mapping of nanopore sequencing reads with GraphMap. Nat Commun 7: 11307.
-
(2016)
Nat Commun
, vol.7
, pp. 11307
-
-
Sović, I.1
Šikic, M.2
Wilm, A.3
Fenlon, S.N.4
Chen, S.5
Nagarajan, N.6
-
32
-
-
84873093810
-
A pan-European study of the C9orf72 repeat associated with FTLD: Geographic prevalence, genomic instability, and intermediate repeats
-
van der Zee J, Gijselinck I, Dillen L, Van Langenhove T, Theuns J, Engelborghs S, Philtjens S, Vandenbulcke M, Sleegers K, Sieben A, et al. 2013. A pan-European study of the C9orf72 repeat associated with FTLD: geographic prevalence, genomic instability, and intermediate repeats. Hum Mutat 34: 363–373.
-
(2013)
Hum Mutat
, vol.34
, pp. 363-373
-
-
van der Zee, J.1
Gijselinck, I.2
Dillen, L.3
Van Langenhove, T.4
Theuns, J.5
Engelborghs, S.6
Philtjens, S.7
Vandenbulcke, M.8
Sleegers, K.9
Sieben, A.10
-
33
-
-
84922584295
-
Comprehensive variation discovery in single human genomes
-
Weisenfeld NI, Yin S, Sharpe T, Lau B, Hegarty R, Holmes L, Sogoloff B, Tabbaa D, Williams L, Russ C, et al. 2014. Comprehensive variation discovery in single human genomes. Nat Genet 46: 1350–1355.
-
(2014)
Nat Genet
, vol.46
, pp. 1350-1355
-
-
Weisenfeld, N.I.1
Yin, S.2
Sharpe, T.3
Lau, B.4
Hegarty, R.5
Holmes, L.6
Sogoloff, B.7
Tabbaa, D.8
Williams, L.9
Russ, C.10
-
34
-
-
12144288251
-
Venezuelan kindreds reveal that genetic and environmental factors modulate Huntington’s disease age of onset
-
Wexler NS, Lorimer J, Porter J, Gomez F, Moskowitz C, Shackell E, Marder K, Penchaszadeh G, Roberts SA, Gayán J, et al. 2004. Venezuelan kindreds reveal that genetic and environmental factors modulate Huntington’s disease age of onset. Proc Natl Acad Sci 101: 3498–3503.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 3498-3503
-
-
Wexler, N.S.1
Lorimer, J.2
Porter, J.3
Gomez, F.4
Moskowitz, C.5
Shackell, E.6
Marder, K.7
Penchaszadeh, G.8
Roberts, S.A.9
Gayán, J.10
-
35
-
-
70349484957
-
High frequency of Friedreich’s ataxia carriers in the Paphos district of Cyprus
-
Zamba-Papanicolaou E, Koutsou P, Daiou C, Gaglia E, Georghiou A, Christodoulou K. 2009. High frequency of Friedreich’s ataxia carriers in the Paphos district of Cyprus. Acta Myol 28: 24–26.
-
(2009)
Acta Myol
, vol.28
, pp. 24-26
-
-
Zamba-Papanicolaou, E.1
Koutsou, P.2
Daiou, C.3
Gaglia, E.4
Georghiou, A.5
Christodoulou, K.6
|