메뉴 건너뛰기




Volumn 45, Issue , 2018, Pages 16-21

Exploring the function of bacterial chemotaxis

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 85042191533     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2018.01.010     Document Type: Review
Times cited : (38)

References (52)
  • 1
    • 15544387869 scopus 로고    scopus 로고
    • E. coli in Motion
    • Springer New York
    • Berg, H.C., E. coli in Motion. 2003, Springer, New York.
    • (2003)
    • Berg, H.C.1
  • 2
    • 0015526205 scopus 로고
    • Chemotaxis in Escherichia coli analyzed by three-dimensional tracking
    • Berg, H.C., Brown, D.A., Chemotaxis in Escherichia coli analyzed by three-dimensional tracking. Nature 239 (1972), 500–504.
    • (1972) Nature , vol.239 , pp. 500-504
    • Berg, H.C.1    Brown, D.A.2
  • 3
    • 79960997653 scopus 로고    scopus 로고
    • Functional and molecular aspects of bacterial chemotaxis
    • Celani, A., Shimizu, T.S., Vergassola, M., Functional and molecular aspects of bacterial chemotaxis. J Stat Phys 144 (2011), 219–240.
    • (2011) J Stat Phys , vol.144 , pp. 219-240
    • Celani, A.1    Shimizu, T.S.2    Vergassola, M.3
  • 4
    • 84861836686 scopus 로고    scopus 로고
    • Responding to chemical gradients: bacterial chemotaxis
    • Sourjik, V., Wingreen, N.S., Responding to chemical gradients: bacterial chemotaxis. Curr Opin Cell Biol 24 (2012), 262–268.
    • (2012) Curr Opin Cell Biol , vol.24 , pp. 262-268
    • Sourjik, V.1    Wingreen, N.S.2
  • 5
    • 84877782979 scopus 로고    scopus 로고
    • Quantitative modeling of bacterial chemotaxis signal amplification and accurate adaptation
    • Tu, Y., Quantitative modeling of bacterial chemotaxis signal amplification and accurate adaptation. Annu Rev Biophys 42 (2013), 337–359.
    • (2013) Annu Rev Biophys , vol.42 , pp. 337-359
    • Tu, Y.1
  • 6
    • 0001180444 scopus 로고
    • Transient response to chemotactic stimuli in Escherichia coli
    • Berg, H.C., Tedesco, P.M., Transient response to chemotactic stimuli in Escherichia coli. Proc Natl Acad Sci U S A 72 (1975), 3235–3239.
    • (1975) Proc Natl Acad Sci U S A , vol.72 , pp. 3235-3239
    • Berg, H.C.1    Tedesco, P.M.2
  • 7
    • 0022960471 scopus 로고
    • Temporal comparisons in bacterial chemotaxis
    • Segall, J., Block, S., Berg, H., Temporal comparisons in bacterial chemotaxis. Proc Natl Acad Sci U S A 23 (1986), 8987–8991.
    • (1986) Proc Natl Acad Sci U S A , vol.23 , pp. 8987-8991
    • Segall, J.1    Block, S.2    Berg, H.3
  • 8
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • Barkai, N., Leibler, S., Robustness in simple biochemical networks. Nature 387 (1997), 913–917.
    • (1997) Nature , vol.387 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 9
    • 0033552946 scopus 로고    scopus 로고
    • Adaptation in bacterial chemotaxis
    • Alon, U., Barkai, N., Surette, M.G., Leibler, S., Adaptation in bacterial chemotaxis. Nature 397 (1999), 168–171.
    • (1999) Nature , vol.397 , pp. 168-171
    • Alon, U.1    Barkai, N.2    Surette, M.G.3    Leibler, S.4
  • 10
    • 84862508198 scopus 로고    scopus 로고
    • Nonlinearity, Fluctuations, and response in sensory systems
    • Celani, A., Vergassola, M., Nonlinearity, Fluctuations, and response in sensory systems. Phys Rev Lett, 108, 2012, 258102.
    • (2012) Phys Rev Lett , vol.108 , pp. 258102
    • Celani, A.1    Vergassola, M.2
  • 12
    • 84857131363 scopus 로고    scopus 로고
    • Noninvasive inference of the molecular chemotactic response using bacterial trajectories
    • Masson, J.B., Voisinne, G., Wong-Ng, J., Celani, A., Vergassola, M., Noninvasive inference of the molecular chemotactic response using bacterial trajectories. Proc Natl Acad Sci U S A 109 (2012), 1802–1807.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 1802-1807
    • Masson, J.B.1    Voisinne, G.2    Wong-Ng, J.3    Celani, A.4    Vergassola, M.5
  • 15
    • 0027476771 scopus 로고
    • Polar location of the chemoreceptor complex in the Escherichia coli cell
    • Maddock, J.R., Shapiro, L., Polar location of the chemoreceptor complex in the Escherichia coli cell. Science 259 (1993), 1717–1723.
    • (1993) Science , vol.259 , pp. 1717-1723
    • Maddock, J.R.1    Shapiro, L.2
  • 16
    • 34247261989 scopus 로고    scopus 로고
    • Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy
    • Zhang, P., Khursigara, C.M., Hartnell, L.M., Subramaniam, S., Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy. Proc Natl Acad Sci U S A 104 (2007), 3777–3781.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 3777-3781
    • Zhang, P.1    Khursigara, C.M.2    Hartnell, L.M.3    Subramaniam, S.4
  • 17
    • 67649922591 scopus 로고    scopus 로고
    • Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy
    • Greenfield, D., et al. Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. PLoS Biol, 7, 2009, e1000137.
    • (2009) PLoS Biol , vol.7 , pp. e1000137
    • Greenfield, D.1
  • 18
    • 0032492852 scopus 로고    scopus 로고
    • Receptor clustering as a cellular mechanism to control sensitivity
    • Bray, D., Levin, M.D., Morton-Firth, C.J., Receptor clustering as a cellular mechanism to control sensitivity. Nature 393 (1998), 85–88.
    • (1998) Nature , vol.393 , pp. 85-88
    • Bray, D.1    Levin, M.D.2    Morton-Firth, C.J.3
  • 19
    • 28444449791 scopus 로고    scopus 로고
    • An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli
    • Mello, B.A., Tu, Y.H., An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli. Proc Natl Acad Sci U S A, 102, 2005, 17354–17359.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 17354-17359
    • Mello, B.A.1    Tu, Y.H.2
  • 21
    • 20344372661 scopus 로고    scopus 로고
    • Adaptational assistance in clusters of bacterial chemoreceptors
    • Li, M.S., Hazelbauer, G.L., Adaptational assistance in clusters of bacterial chemoreceptors. Mol Microbiol 56 (2005), 1617–1626.
    • (2005) Mol Microbiol , vol.56 , pp. 1617-1626
    • Li, M.S.1    Hazelbauer, G.L.2
  • 22
    • 33748364127 scopus 로고    scopus 로고
    • Precise adaptation in bacterial chemotaxis through assistance neighborhoods
    • Endres, R.G., Wingreen, N.S., Precise adaptation in bacterial chemotaxis through assistance neighborhoods. Proc Natl Acad Sci U S A 103 (2006), 13040–13044.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 13040-13044
    • Endres, R.G.1    Wingreen, N.S.2
  • 23
    • 0015413647 scopus 로고
    • Chemotaxis toward amino acids in Escherichia coli
    • Mesibov, R., Adler, J., Chemotaxis toward amino acids in Escherichia coli. J Bacteriol 112 (1972), 315–326.
    • (1972) J Bacteriol , vol.112 , pp. 315-326
    • Mesibov, R.1    Adler, J.2
  • 24
    • 0021057460 scopus 로고
    • Chemotactic response of Escherichia coli to chemically synthesized amino acids
    • Hedblom, M.L., Adler, J., Chemotactic response of Escherichia coli to chemically synthesized amino acids. J Bacteriol 155 (1983), 1463–1466.
    • (1983) J Bacteriol , vol.155 , pp. 1463-1466
    • Hedblom, M.L.1    Adler, J.2
  • 25
    • 0028095674 scopus 로고
    • Mutations in NADH: ubiquinone oxidoreductase of Escherichia coli affect growth on mixed amino acids
    • Pruss, B.M., Nelms, J.M., Park, C., Wolfe, A.J., Mutations in NADH: ubiquinone oxidoreductase of Escherichia coli affect growth on mixed amino acids. J Bacteriol 176 (1994), 2143–2150.
    • (1994) J Bacteriol , vol.176 , pp. 2143-2150
    • Pruss, B.M.1    Nelms, J.M.2    Park, C.3    Wolfe, A.J.4
  • 26
    • 0032721968 scopus 로고    scopus 로고
    • Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme a flux for growth and survival
    • Chang, D.E., Shin, S., Rhee, J.S., Pan, J.G., Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme a flux for growth and survival. J Bacteriol 181 (1999), 6656–6663.
    • (1999) J Bacteriol , vol.181 , pp. 6656-6663
    • Chang, D.E.1    Shin, S.2    Rhee, J.S.3    Pan, J.G.4
  • 27
    • 0017395931 scopus 로고
    • Role of transport systems in amino acid metabolism: leucine toxicity and the branched-chain amino acid transport systems
    • Quay, S.C., Dick, T.E., Oxender, D.L., Role of transport systems in amino acid metabolism: leucine toxicity and the branched-chain amino acid transport systems. J Bacteriol 129 (1977), 1257–1265.
    • (1977) J Bacteriol , vol.129 , pp. 1257-1265
    • Quay, S.C.1    Dick, T.E.2    Oxender, D.L.3
  • 28
    • 0018396918 scopus 로고
    • Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12
    • De Felice, M., Levinthal, M., Iaccarino, M., Guardiola, J., Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12. Microbiol Rev 43 (1979), 42–58.
    • (1979) Microbiol Rev , vol.43 , pp. 42-58
    • De Felice, M.1    Levinthal, M.2    Iaccarino, M.3    Guardiola, J.4
  • 29
    • 84946476393 scopus 로고    scopus 로고
    • Real-time metabolome profiling of the metabolic switch between starvation and growth
    • The paper reports real-time metabolome profiling of Escherichia coli. In addition to its importance per se, for example, for the reported evidence of switch-like feedback inhibition in amino acid biosynthesis, this dataset could be of importance for quantitatively connecting metabolism and motility.
    • Link, H., Fuhrer, T., Gerosa, L., Zamboni, N., Sauer, U., Real-time metabolome profiling of the metabolic switch between starvation and growth. Nat Methods 12 (2015), 1091–1097 The paper reports real-time metabolome profiling of Escherichia coli. In addition to its importance per se, for example, for the reported evidence of switch-like feedback inhibition in amino acid biosynthesis, this dataset could be of importance for quantitatively connecting metabolism and motility.
    • (2015) Nat Methods , vol.12 , pp. 1091-1097
    • Link, H.1    Fuhrer, T.2    Gerosa, L.3    Zamboni, N.4    Sauer, U.5
  • 30
    • 85042174058 scopus 로고    scopus 로고
    • The role of adaptation in bacterial speed races
    • This paper shows that perfect adaptation is not needed to climb gradients and might actually be detrimental. This is demonstrated by microfluidically engineering a speed race among bacteria and tracking their up-gradient progression. Breaking perfect adaptation to aspartate by a background of serine results in sped-up progression of the bacterial front.
    • Wong-Ng, J., Melbinger, A., Celani, A., Vergassola, M., The role of adaptation in bacterial speed races. PLoS Comput Biol 397 (2016), 168–171 This paper shows that perfect adaptation is not needed to climb gradients and might actually be detrimental. This is demonstrated by microfluidically engineering a speed race among bacteria and tracking their up-gradient progression. Breaking perfect adaptation to aspartate by a background of serine results in sped-up progression of the bacterial front.
    • (2016) PLoS Comput Biol , vol.397 , pp. 168-171
    • Wong-Ng, J.1    Melbinger, A.2    Celani, A.3    Vergassola, M.4
  • 31
    • 11244251890 scopus 로고    scopus 로고
    • Chemotaxis: the role of internal delays
    • de Gennes, P.G., Chemotaxis: the role of internal delays. Eur Biophys J 33 (2004), 691–693.
    • (2004) Eur Biophys J , vol.33 , pp. 691-693
    • de Gennes, P.G.1
  • 32
    • 21544461236 scopus 로고    scopus 로고
    • The bacterial chemotactic response reflects a compromise between transient and steady-state behavior
    • Clark, D.A., Grant, L.C., The bacterial chemotactic response reflects a compromise between transient and steady-state behavior. Proc Natl Acad Sci U S A 102 (2005), 9150–9155.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 9150-9155
    • Clark, D.A.1    Grant, L.C.2
  • 33
    • 76549110816 scopus 로고    scopus 로고
    • Bacterial strategies for chemotaxis response
    • Celani, A., Vergassola, M., Bacterial strategies for chemotaxis response. Proc Natl Acad Sci U S A 107 (2010), 1391–1396.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 1391-1396
    • Celani, A.1    Vergassola, M.2
  • 34
    • 85016739682 scopus 로고    scopus 로고
    • Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation
    • Long, J., Zucker, S.W., Emonet, T., Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation. PLoS Comput Biol, 13, 2017, e1005429.
    • (2017) PLoS Comput Biol , vol.13 , pp. e1005429
    • Long, J.1    Zucker, S.W.2    Emonet, T.3
  • 35
    • 0014013196 scopus 로고
    • Chemotaxis in bacteria
    • Adler, J., Chemotaxis in bacteria. Science 153 (1966), 708–716.
    • (1966) Science , vol.153 , pp. 708-716
    • Adler, J.1
  • 36
    • 0013934454 scopus 로고
    • Effect of amino acids and oxygen on chemotaxis in Escherichia coli
    • Adler, J., Effect of amino acids and oxygen on chemotaxis in Escherichia coli. J Bacteriol 92 (1966), 121–129.
    • (1966) J Bacteriol , vol.92 , pp. 121-129
    • Adler, J.1
  • 37
    • 0015011285 scopus 로고
    • Model for chemotaxis
    • Keller, E., Segel, L., Model for chemotaxis. J Theor Biol 30 (1971), 225–234.
    • (1971) J Theor Biol , vol.30 , pp. 225-234
    • Keller, E.1    Segel, L.2
  • 38
    • 77954024185 scopus 로고    scopus 로고
    • A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli
    • Shimizu, T.S., Tu, Y., Berg, H.C., A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli. Mol Syst Biol, 6, 2010, 382.
    • (2010) Mol Syst Biol , vol.6 , pp. 382
    • Shimizu, T.S.1    Tu, Y.2    Berg, H.C.3
  • 39
    • 0017117005 scopus 로고
    • Model for the chemotactic response of a bacterial population
    • Lapidus, I.R., Schiller, R., Model for the chemotactic response of a bacterial population. Biophys J 16 (1976), 779–789.
    • (1976) Biophys J , vol.16 , pp. 779-789
    • Lapidus, I.R.1    Schiller, R.2
  • 40
    • 0010346306 scopus 로고
    • Traveling bands of chemotactic bacteria in the context of population growth
    • Lauffenburger, D., Kennedy, C.R., Aris, R., Traveling bands of chemotactic bacteria in the context of population growth. Bull Math Biol 46 (1984), 19–40.
    • (1984) Bull Math Biol , vol.46 , pp. 19-40
    • Lauffenburger, D.1    Kennedy, C.R.2    Aris, R.3
  • 41
    • 85031031351 scopus 로고    scopus 로고
    • Cell–cell communication enhances bacterial chemotaxis toward external attractants
    • This paper shows that bacteria in a population influence their collective motion by secreting a chemotactic agent that enhances their motility and couples the two main receptors Tar and Tsr for aminoacids. This constitutes the most recent and compelling evidence for the integration of multiple aminoacids cues in the collective migration of bacterial populations, as discussed in detail in the body of the paper.
    • Long, Z., Quaife, B., Salman, H., Oltvai, Z.N., Cell–cell communication enhances bacterial chemotaxis toward external attractants. Sci Rep, 7, 2017, 12855 This paper shows that bacteria in a population influence their collective motion by secreting a chemotactic agent that enhances their motility and couples the two main receptors Tar and Tsr for aminoacids. This constitutes the most recent and compelling evidence for the integration of multiple aminoacids cues in the collective migration of bacterial populations, as discussed in detail in the body of the paper.
    • (2017) Sci Rep , vol.7 , pp. 12855
    • Long, Z.1    Quaife, B.2    Salman, H.3    Oltvai, Z.N.4
  • 42
    • 0026023209 scopus 로고
    • Complex patterns formed by motile cells of Escherichia coli
    • Budrene, E.O., Berg, H.C., Complex patterns formed by motile cells of Escherichia coli. Nature 349 (1991), 630–633.
    • (1991) Nature , vol.349 , pp. 630-633
    • Budrene, E.O.1    Berg, H.C.2
  • 43
    • 0031897383 scopus 로고    scopus 로고
    • Physical mechanisms for chemotactic pattern formation by bacteria
    • Brenner, M.P., Levitov, L.S., Budrene, E.O., Physical mechanisms for chemotactic pattern formation by bacteria. Biophys J 74 (1998), 1677–1693.
    • (1998) Biophys J , vol.74 , pp. 1677-1693
    • Brenner, M.P.1    Levitov, L.S.2    Budrene, E.O.3
  • 44
    • 0344702705 scopus 로고    scopus 로고
    • Influence of topology on bacterial social interaction
    • Park, S., et al. Influence of topology on bacterial social interaction. Proc Natl Acad Sci U S A 100 (2003), 13910–13915.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 13910-13915
    • Park, S.1
  • 46
    • 84867637143 scopus 로고    scopus 로고
    • Bacterial thermotaxis by speed modulation
    • Demir, M., Salman, H., Bacterial thermotaxis by speed modulation. Biophys J 103 (2012), 1683–1690.
    • (2012) Biophys J , vol.103 , pp. 1683-1690
    • Demir, M.1    Salman, H.2
  • 47
    • 84989960850 scopus 로고    scopus 로고
    • Chemotaxis towards autoinducer 2 mediates autoaggregation in Escherichia coli
    • This paper demonstrates chemotaxis of E. coli toward the autoinducer 2, which mediates quorum sensing communication among individual bacteria. That endows bacteria with a powerful means of controlling their collective motion, as demonstrated by the example of autoaggregation.
    • Laganenka, L., Colin, R., Sourjik, V., Chemotaxis towards autoinducer 2 mediates autoaggregation in Escherichia coli. Nat Commun, 30, 2016, 12984 This paper demonstrates chemotaxis of E. coli toward the autoinducer 2, which mediates quorum sensing communication among individual bacteria. That endows bacteria with a powerful means of controlling their collective motion, as demonstrated by the example of autoaggregation.
    • (2016) Nat Commun , vol.30 , pp. 12984
    • Laganenka, L.1    Colin, R.2    Sourjik, V.3
  • 48
    • 84858988771 scopus 로고    scopus 로고
    • Quorum sensing and bacterial social interactions in biofilms
    • Li, Y.H., Tian, X.L., Quorum sensing and bacterial social interactions in biofilms. Sensors 12 (2012), 2519–02538.
    • (2012) Sensors , vol.12 , pp. 2519-02538
    • Li, Y.H.1    Tian, X.L.2
  • 49
    • 50249153550 scopus 로고    scopus 로고
    • Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease
    • Jayaraman, A., Wood, T.K., Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease. Annu Rev Biomed Eng 10 (2008), 145–167.
    • (2008) Annu Rev Biomed Eng , vol.10 , pp. 145-167
    • Jayaraman, A.1    Wood, T.K.2
  • 50
    • 27944442272 scopus 로고    scopus 로고
    • Quorum sensing: cell-to-cell communication in bacteria
    • Waters, C.M., Bassler, B.L., Quorum sensing: cell-to-cell communication in bacteria. Annu Rev Cell Dev Biol 21 (2005), 319–346.
    • (2005) Annu Rev Cell Dev Biol , vol.21 , pp. 319-346
    • Waters, C.M.1    Bassler, B.L.2
  • 51
    • 0014053906 scopus 로고
    • The effect of environmental conditions on the motility of Escherichia coli
    • Adler, J., Templeton, B., The effect of environmental conditions on the motility of Escherichia coli. J Gen Microbiol 46 (1967), 175–184.
    • (1967) J Gen Microbiol , vol.46 , pp. 175-184
    • Adler, J.1    Templeton, B.2
  • 52
    • 85007433687 scopus 로고    scopus 로고
    • Non-genetic diversity modulates population performance
    • This paper shows that behavioral diversity has a direct and measurable impact on the exploration by bacterial populations of their surroundings. This is demonstrated by creating a miniature race course for bacteria and tracking single cells as they swim through it. Evolution may then operate by modulating the diversity in the bacterial population.
    • Waite, A.J., Frankel, N.W., Dufour, Y.S., Johnston, J.F., Long, J., Emonet, T., Non-genetic diversity modulates population performance. Mol Syst Biol 12 (2016), 1–14 This paper shows that behavioral diversity has a direct and measurable impact on the exploration by bacterial populations of their surroundings. This is demonstrated by creating a miniature race course for bacteria and tracking single cells as they swim through it. Evolution may then operate by modulating the diversity in the bacterial population.
    • (2016) Mol Syst Biol , vol.12 , pp. 1-14
    • Waite, A.J.1    Frankel, N.W.2    Dufour, Y.S.3    Johnston, J.F.4    Long, J.5    Emonet, T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.