Noninvasive inference of the molecular chemotactic response using bacterial trajectories

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 5, 2012, Pages 1802-1807

  Masson, Jean Baptiste ^a,b   Voisinne, Guillaume ^a,b   Wong Ng, Jerome ^a,b   Celani, Antonio ^a,b   Vergassola, Massimo ^a,b  

^a INSTITUT PASTEUR   (France)

^b CNRS   (France)

Author keywords

Bacterial chemotaxis; Signal transduction; Statistical inference

Indexed keywords

ASPARTIC ACID; GLUCOSE; LEUCINE; SERINE;

ADAPTATION; ARTICLE; BACTERIUM; CHEMOTAXIS; CONTROLLED STUDY; ESCHERICHIA COLI; FLAGELLUM; MICROFLUIDICS; NON INVASIVE PROCEDURE; NONHUMAN; PRIORITY JOURNAL; SIGNAL TRANSDUCTION;

BAYES THEOREM; CHEMOTAXIS; CULTURE MEDIA; ESCHERICHIA COLI; FLAGELLA; MICROFLUIDICS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 84857131363     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1116772109     Document Type: Article

References (35)

1. Berg HC (2003) E. coli in Motion (Springer, New York).
2. Vladimirov N, Sourjik V (2009) Chemotaxis: How bacteria use memory. Biol Chem 390:1097-1104.
3. Greenfield D, et al. (2009) Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. PLoS Biol 7:e1000137.
4. Bray D, Levin MD, Morton-Firth CJ (1998) Receptor clustering as a cellular mechanism to control sensitivity. Nature 393(6680):85-88. (Pubitemid 28240260)
5. Bray D, Duke TAJ (2004) Conformational spread: The propagation of allosteric states in large multiprotein complexes. Annu Rev Biophys Biomol Struct 33:53-73. (Pubitemid 38829951)
6. Mello BA, Tu Y (2005) An allosteric model for heterogeneous receptor complexes: Understanding bacterial chemotaxis responses to multiple stimuli. Proc Natl Acad Sci USA 102:17354-17359. (Pubitemid 41740870)
7. Keymer JE, Endres RG, Skoge M, Meir Y, Wingreen NS (2006) Chemosensing in Escherichia coli: Two regimes of two-state receptors. Proc Natl Acad Sci USA 103: 1786-1791. (Pubitemid 43228771)
8. Li M, Hazelbauer GL (2005) Adaptational assistance in clusters of bacterial chemoreceptors. Mol Microbiol 56:1617-1626. (Pubitemid 40780655)
9. Hansen CH, Endres RG, Wingreen NS (2008) Chemotaxis in Escherichia coli: A molecular model for robust precise adaptation. PLoS Comput Biol 4:e1.
10. Block SM, Segall JE, Berg HC (1982) Impulse responses in bacterial chemotaxis. Cell 31:215-226. (Pubitemid 13215207)
11. Silverman M, Simon M (1974) Flagellar rotation and the mechanism of bacterial motility. Nature 249(452):73-74.
12. Segall JE, Block SM, Berg HC (1986) Temporal comparisons in bacterial chemotaxis. Proc Natl Acad Sci USA 83:8987-8991.
13. Korobkova E, Emonet T, Vilar JMG, Shimizu TS, Cluzel P (2004) From molecular noise to behavioural variability in a single bacterium. Nature 428:574-578. (Pubitemid 38480542)
14. Park H, et al. (2010) Interdependence of behavioural variability and response to small stimuli in bacteria. Nature 468:819-823.
15. Paster E, Ryu WS (2008) The thermal impulse response of Escherichia coli. Proc Natl Acad Sci USA 105:5373-5377. (Pubitemid 351753870)
16. Shoval O, et al. (2010) Fold-change detection and scalar symmetry of sensory input fields. Proc Natl Acad Sci USA 107:15995-16000.
17. Celani A, Shimizu TS, Vergassola M (2011) Molecular and functional aspects of bacterial chemotaxis. J Stat Phys 144:219-240.
18. Lazova MD, Ahmed T, Bellomo D, Stocker R, Shimizu TS (2011) Response rescaling in bacterial chemotaxis. Proc Natl Acad Sci USA 108:13870-13875.
19. de Gennes PG (2004) Chemotaxis: The role of internal delays. Eur Biophys J 33:691-693.
20. Clark DA, Grant LC (2005) The bacterial chemotactic response reflects a compromise between transient and steady-state behavior. Proc Natl Acad Sci USA 102:9150-9155. (Pubitemid 40923532)
21. Celani A, Vergassola M (2010) Bacterial strategies for chemotaxis response. Proc Natl Acad Sci USA 107:1391-1396.
22. Turner L, Ryu WS, Berg HC (2000) Real-time imaging of fluorescent flagellar filaments. J Bacteriol 182:2793-2801. (Pubitemid 30246910)
23. Fahrner KA, Ryu WS, Berg HC (2003) Biomechanics: Bacterial flagellar switching under load. Nature 423:938. (Pubitemid 36806900)
24. Berg HC, Brown DA (1972) Chemotaxis in Escherichia coli analysed by three-dimensional tracking. Nature 239:500-504.
25. Spudich JL, Koshland DE, Jr. (1976) Non-genetic individuality: Chance in the single cell. Nature 262:467-471.
26. MacKay D (2003) Information Theory, Inference, and Learning Algorithms (Cambridge Univ Press, Cambridge, UK).
27. Adler J, Hazelbauer GL, Dahl MM (1973) Chemotaxis toward sugars in Escherichia coli. J Bacteriol 115:824-847.
28. Adler J, Epstein W (1974) Phosphotransferase-system enzymes as chemoreceptors for certain sugars in Escherichia coli chemotaxis. Proc Natl Acad Sci USA 71:2895-2899.
29. Lux R, et al. (1999) Elucidation of a PTS-carbohydrate chemotactic signal pathway in Escherichia coli using a time-resolved behavioral assay. Mol Biol Cell 10:1133-1146. (Pubitemid 29193736)
30. Barak R, Eisenbach M (2001) Acetylation of the response regulator, CheY, is involved in bacterial chemotaxis. Mol Microbiol 40:731-743. (Pubitemid 32453125)
31. Waterfall JJ, et al. (2006) Sloppy-model universality class and the Vandermonde matrix. Phys Rev Lett 97:150601.
32. Tu Y, Shimizu TS, Berg HC (2008) Modeling the chemotactic response of Escherichia coli to time-varying stimuli. Proc Natl Acad Sci USA 105:14855-14860.
33. Shimizu TS, Tu Y, Berg HC (2010) A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli. Mol Syst Biol 6:382.
34. Clausznitzer D, Endres RG (2011) Noise characteristics of the Escherichia coli rotary motor. BMC Syst Biol 5:151.
35. Cluzel P, Surette MG, Leibler S (2000) An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells. Science 287:1652-1655. (Pubitemid 30127766)