Imprecision of adaptation in Escherichia coli chemotaxis

PLoS ONE

Volumn 9, Issue 1, 2014, Pages

  Neumann, Silke ^a   Vladimirov, Nikita ^a,c   Krembel, Anna K ^a   Wingreen, Ned S ^b   Sourjik, Victor ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

^b PRINCETON UNIVERSITY   (United States)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CYSTEINE; SERINE;

ADAPTATION; ADAPTIVE BEHAVIOR; ARTICLE; BACTERIAL CELL; CELL POPULATION; CHEMORECEPTOR; CHEMOTAXIS; CONCENTRATION (PARAMETERS); ESCHERICHIA COLI; NONHUMAN; PROTEIN METHYLATION;

ADAPTATION, PHYSIOLOGICAL; CELL PROLIFERATION; CHEMOTAXIS; ESCHERICHIA COLI; LIGANDS;

EID: 84897093109     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0084904     Document Type: Article

References (30)

1. Springer MS, Goy MF, Adler J (1979) Protein methylation in behavioural control mechanisms and in signal transduction. Nature 280: 279-284. (Pubitemid 10199168)
2. Hazelbauer GL, Falke JJ, Parkinson JS (2008) Bacterial chemoreceptors: high-performance signaling in networked arrays. Trends Biochem Sci 33: 9-19.
3. Vladimirov N, Sourjik V (2009) Chemotaxis: how bacteria use memory. Biol Chem 390: 1097-1104.
4. Hazelbauer GL, Lai WC (2010) Bacterial chemoreceptors: providing enhanced features to two-component signaling. Curr Opin Microbiol 13: 124-132.
5. Sourjik V, Wingreen NS (2011) Responding to chemical gradients: bacterial chemotaxis. Curr Opin Cell Biol 24: 1-7.
6. Cluzel P, Surette M, Leibler S (2000) An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells. Science 287: 1652-1655. (Pubitemid 30127766)
7. Macnab RM, Koshland DE, Jr. (1972) The gradient-sensing mechanism in bacterial chemotaxis. Proc Natl Acad Sci U S A 69: 2509-2512.
8. Berg HC, Brown DA (1972) Chemotaxis in Escherichia coli analysed by three-dimensional tracking. Nature 239: 500-504.
9. Barkai N, Leibler S (1997) Robustness in simple biochemical networks. Nature 387: 913-917. (Pubitemid 27289593)
10. Alon U, Surette MG, Barkai N, Leibler S (1999) Robustness in bacterial chemotaxis. Nature 397: 168-171.
11. Yi TM, Huang Y, Simon MI, Doyle J (2000) Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc Natl Acad Sci U S A 97: 4649-4653. (Pubitemid 30238612)
12. Vladimirov N, Lovdok L, Lebiedz D, Sourjik V (2008) Dependence of bacterial chemotaxis on gradient shape and adaptation rate. PLoS Comput Biol 4: e1000242.
13. Meir Y, Jakovljevic V, Oleksiuk O, Sourjik V, Wingreen NS (2010) Precision and kinetics of adaptation in bacterial chemotaxis. Biophys J 99: 2766-2774.
14. Neumann S, Hansen CH, Wingreen NS, Sourjik V (2010) Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis. EMBO J 29: 3484-3495.
15. Min TL, Mears PJ, Golding I, Chemla YR (2012) Chemotactic adaptation kinetics of individual Escherichia coli cells. Proc Natl Acad Sci U S A 109: 9869-9874.
16. Sourjik V, Berg HC (2002) Receptor sensitivity in bacterial chemotaxis. Proc Natl Acad Sci U S A 99: 123-127. (Pubitemid 34060327)
17. Sourjik V, Vaknin A, Shimizu TS, Berg HC (2007) In vivo measurement by FRET of pathway activity in bacterial chemotaxis. Methods Enzymol 423: 365-391.
18. Berg HC, Tedesco PM (1975) Transient response to chemotactic stimuli in Escherichia coli. Proc Natl Acad Sci U S A 72: 3235-3239.
19. Kehry MR, Bond MW, Hunkapiller MW, Dahlquist FW (1983) Enzymatic deamidation of methyl-accepting chemotaxis proteins in Escherichia coli catalyzed by the cheB gene product. Proc Natl Acad Sci U S A 80: 3599-3603.
20. Borkovich KA, Alex LA, Simon MI (1992) Attenuation of sensory receptor signaling by covalent modification. Proc Natl Acad Sci U S A 89: 6756-6760.
21. Hansen CH, Endres RG, Wingreen NS (2008) Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation. PLoS Comput Biol 4: e1.
22. Stocker R, Seymour JR (2012) Ecology and physics of bacterial chemotaxis in the ocean. Microbiol Mol Biol Rev 76: 792-812.
23. Mesibov R, Adler J (1972) Chemotaxis toward amino acids in Escherichia coli. J Bacteriol 112: 315-326.
24. Amos H, Cohen GN (1954) Amino acid utilization in bacterial growth. II. A study of threonine-isoleucine relationships in mutants of Escherichia coli. Biochem J 57: 338-343.
25. Harris CL (1981) Cysteine and growth inhibition of Escherichia coli: threonine deaminase as the target enzyme. J Bacteriol 145: 1031-1035.
26. Hama H, Sumita Y, Kakutani Y, Tsuda M, Tsuchiya T (1990) Target of serine inhibition in Escherichia coli. Biochem Biophys Res Commun 168: 1211-1216. (Pubitemid 20176008)
27. Hama H, Kayahara T, Tsuda M, Tsuchiya T (1991) Inhibition of homoserine dehydrogenase I by L-serine in Escherichia coli. J Biochem 109: 604-608.
28. Sourjik V, Berg HC (2004) Functional interactions between receptors in bacterial chemotaxis. Nature 428: 437-441. (Pubitemid 38419690)
29. Sambrock J, Russell DW (2001) Molecular cloning: a laboratory manual: Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
30. Lan G, Sartori P, Neumann S, Sourjik V, Tu Y (2012) The energy-speed-accuracy tradeoff in sensory adaptation. Nat Phys 8: 422-428.