-
1
-
-
84862286169
-
A framework for human microbiome research
-
The Human Microbiome Project Consortium
-
The Human Microbiome Project Consortium. 2012. A framework for human microbiome research. Nature 486:215-221. http://dx.doi.org/10.1038/nature11209.
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
2
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Human Microbiome Project Consortium
-
Human Microbiome Project Consortium. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486:207-214. http://dx.doi.org/10.1038/nature11234.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
3
-
-
35348968286
-
The human microbiome project
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. 2007. The human microbiome project. Nature 449:804-810. http://dx.doi.org/10.1038/nature06244.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
5
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. 2010. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335-336. http://dx.doi.org/10.1038/nmeth.f.303.7.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
6
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461. http://dx.doi.org/10.1093/bioinformatics/btq461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
7
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410. http://dx.doi.org/10.1006/jmbi.1990.9999.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
8
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD, Handelsman J. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506. http://dx.doi.org/10.1128/AEM.71.3.1501.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
9
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
Li W, Jaroszewski L, Godzik A. 2001. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17:282-283. http://dx.doi.org/10.1093/bioinformatics/17.3.282.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
10
-
-
0036169928
-
Tolerating some redundancy significantly speeds up clustering of large protein databases
-
Li W, Jaroszewski L, Godzik A. 2002. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 18:77-82. http://dx.doi.org/10.1093/bioinformatics/18.1.77.
-
(2002)
Bioinformatics
, vol.18
, pp. 77-82
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
11
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A. 2006. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658-1659. http://dx.doi.org/10.1093/bioinformatics/btl158.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
12
-
-
84930225510
-
Micca: A complete and accurate software for taxonomic profiling of metagenomic data
-
Albanese D, Fontana P, De Filippo C, Cavalieri D, Donati C. 2015. Micca: a complete and accurate software for taxonomic profiling of metagenomic data. Sci Rep 5:9743. http://dx.doi.org/10.1038/srep09743.
-
(2015)
Sci Rep
, vol.5
, pp. 9743
-
-
Albanese, D.1
Fontana, P.2
De Filippo, C.3
Cavalieri, D.4
Donati, C.5
-
13
-
-
84907710189
-
Swarm: Robust and fast clustering method for amplicon-based studies
-
Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M. 2014. Swarm: robust and fast clustering method for amplicon-based studies. PeerJ 2:e593. http://dx.doi.org/10.7717/peerj.593.
-
(2014)
PeerJ
, vol.2
, pp. e593
-
-
Mahé, F.1
Rognes, T.2
Quince, C.3
De Vargas, C.4
Dunthorn, M.5
-
14
-
-
84951008522
-
Swarm v2: Highly-scalable and high-resolution amplicon clustering
-
Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M. 2015. Swarm v2: highly-scalable and high-resolution amplicon clustering. PeerJ 3:e1420. http://dx.doi.org/10.7717/peerj.1420.
-
(2015)
PeerJ
, vol.3
, pp. e1420
-
-
Mahé, F.1
Rognes, T.2
Quince, C.3
De Vargas, C.4
Dunthorn, M.5
-
15
-
-
84870814915
-
SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
-
Kopylova E, Noé L, Touzet H. 2012. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinformatics 28:3211-3217. http://dx.doi.org/10.1093/bioinformatics/bts611.
-
(2012)
Bioinformatics
, vol.28
, pp. 3211-3217
-
-
Kopylova, E.1
Noé, L.2
Touzet, H.3
-
16
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar RC. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10:996 -998. http://dx.doi.org/10.1038/nmeth.2604.
-
(2013)
Nat Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
17
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537-7541. http://dx.doi.org/10.1128/AEM.01541-09.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
18
-
-
84884577945
-
Advancing our understanding of the human microbiome using QIIME
-
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. 2013. Advancing our understanding of the human microbiome using QIIME. Methods Enzymol 531:371-444. http://dx.doi.org/10.1016/B978-0-12-407863-5.00019-8.
-
(2013)
Methods Enzymol
, vol.531
, pp. 371-444
-
-
Navas-Molina, J.A.1
Peralta-Sánchez, J.M.2
González, A.3
McMurdie, P.J.4
Vázquez-Baeza, Y.5
Xu, Z.6
Ursell, L.K.7
Lauber, C.8
Zhou, H.9
Song, S.J.10
Huntley, J.11
Ackermann, G.L.12
Berg-Lyons, D.13
Holmes, S.14
Caporaso, J.G.15
Knight, R.16
-
19
-
-
84920714710
-
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
-
Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou H-W, Knight R, Caporaso JG. 2014. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ 2:e545. http://dx.doi.org/10.7717/peerj.545.
-
(2014)
PeerJ
, vol.2
, pp. e545
-
-
Rideout, J.R.1
He, Y.2
Navas-Molina, J.A.3
Walters, W.A.4
Ursell, L.K.5
Gibbons, S.M.6
Chase, J.7
McDonald, D.8
Gonzalez, A.9
Robbins-Pianka, A.10
Clemente, J.C.11
Gilbert, J.A.12
Huse, S.M.13
Zhou, H.-W.14
Knight, R.15
Caporaso, J.G.16
-
20
-
-
0027092678
-
Selection of representative protein data sets
-
Hobohm U, Scharf M, Schneider R, Sander C. 1992. Selection of representative protein data sets. Protein Sci 1:409-417. http://dx.doi.org/10.1002/pro.5560010313.
-
(1992)
Protein Sci
, vol.1
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
21
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. BioInformatics 27:2194-2200. http://dx.doi.org/10.1093/bioinformatics/btr381.
-
(2011)
BioInformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
22
-
-
0003354581
-
Numerical ecology
-
2nd ed. Elsevier Science, Amsterdam, The Netherlands
-
Legendre P, Legendre L. 1998. Numerical ecology, 2nd ed. Developments in environmental modelling, vol 20, p . Elsevier Science, Amsterdam, The Netherlands.
-
(1998)
Developments in Environmental Modelling
, vol.20
-
-
Legendre, P.1
Legendre, L.2
-
23
-
-
79954506754
-
PrimerProspector: De novo design and taxonomic analysis of barcoded polymerase chain reaction primers
-
Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R. 2011. PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Bioinformatics 27: 1159-1161. http://dx.doi.org/10.1093/bioinformatics/btr087.
-
(2011)
Bioinformatics
, vol.27
, pp. 1159-1161
-
-
Walters, W.A.1
Caporaso, J.G.2
Lauber, C.L.3
Berg-Lyons, D.4
Fierer, N.5
Knight, R.6
-
24
-
-
84857145150
-
ART: A next-generation sequencing read simulator
-
Huang W, Li L, Myers JR, Marth GT. 2012. ART: a next-generation sequencing read simulator. BioInformatics 28:593-594. http://dx.doi.org/10.1093/bioinformatics/btr708.
-
(2012)
BioInformatics
, vol.28
, pp. 593-594
-
-
Huang, W.1
Li, L.2
Myers, J.R.3
Marth, G.T.4
-
25
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. 2013. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods 10: 57-59. http://dx.doi.org/10.1038/nmeth.2276.
-
(2013)
Nat Methods
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
Mills, D.A.7
Caporaso, J.G.8
-
26
-
-
70349915703
-
Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity
-
Porazinska DL, Giblin-Davis RM, Faller L, Farmerie W, Kanzaki N, Morris K, Powers TO, Tucker AE, Sung W, Thomas WK. 2009. Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity. Mol Ecol Resour 9:1439-1450. http://dx.doi.org/10.1111/j.1755-0998.2009.02611.x.
-
(2009)
Mol Ecol Resour
, vol.9
, pp. 1439-1450
-
-
Porazinska, D.L.1
Giblin-Davis, R.M.2
Faller, L.3
Farmerie, W.4
Kanzaki, N.5
Morris, K.6
Powers, T.O.7
Tucker, A.E.8
Sung, W.9
Thomas, W.K.10
-
27
-
-
83255175699
-
Open resource metagenomics: A model for sharing metagenomic libraries
-
Neufeld JD, Engel K, Cheng J, Moreno-Hagelsieb G, Rose DR, Charles TC. 2011. Open resource metagenomics: a model for sharing metagenomic libraries. Stand Genomic Sci 5:203-210. http://dx.doi.org/10.4056/sigs.1974654.
-
(2011)
Stand Genomic Sci
, vol.5
, pp. 203-210
-
-
Neufeld, J.D.1
Engel, K.2
Cheng, J.3
Moreno-Hagelsieb, G.4
Rose, D.R.5
Charles, T.C.6
-
28
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. 2009. Bacterial community variation in human body habitats across space and time. Science 326:1694-1697. http://dx.doi.org/10.1126/science.1177486.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
29
-
-
84908132133
-
Biogeographic patterns in below-ground diversity in New York City’s Central Park are similar to those observed globally
-
Ramirez KS, Leff JW, Barberán A, Bates ST, Betley J, Crowther TW, Kelly EF, Oldfield EE, Shaw EA, Steenbock C, Bradford MA, Wall DH, Fierer N. 2014. Biogeographic patterns in below-ground diversity in New York City’s Central Park are similar to those observed globally. Proc R Soc B Biol Sci 281:1-9. http://dx.doi.org/10.1098/rspb.2014.1988.
-
(2014)
Proc R Soc B Biol Sci
, vol.281
, pp. 1-9
-
-
Ramirez, K.S.1
Leff, J.W.2
Barberán, A.3
Bates, S.T.4
Betley, J.5
Crowther, T.W.6
Kelly, E.F.7
Oldfield, E.E.8
Shaw, E.A.9
Steenbock, C.10
Bradford, M.A.11
Wall, D.H.12
Fierer, N.13
-
30
-
-
84868270724
-
The biological observation matrix (BIOM) format or: How I learned to stop worrying and love the ome-ome
-
McDonald D, Clemente JC, Kuczynski J, Rideout JR, Stombaugh J, Wendel D, Wilke A, Huse S, Hufnagle J, Meyer F, Knight R, Caporaso JG. 2012. The biological observation matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1:7. http://dx.doi.org/10.1186/2047-217X-1-7.
-
(2012)
Gigascience
, vol.1
, pp. 7
-
-
McDonald, D.1
Clemente, J.C.2
Kuczynski, J.3
Rideout, J.R.4
Stombaugh, J.5
Wendel, D.6
Wilke, A.7
Huse, S.8
Hufnagle, J.9
Meyer, F.10
Knight, R.11
Caporaso, J.G.12
-
31
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261-5267. http://dx.doi.org/10.1128/AEM.00062-07.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
32
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72:5069 -5072. http://dx.doi.org/10.1128/AEM.03006-05.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
33
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. 2012. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 6:610-618. http://dx.doi.org/10.1038/ismej.2011.139.
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
34
-
-
37549027613
-
Silva: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. 2007. Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188-7196. http://dx.doi.org/10.1093/nar/gkm864.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
35
-
-
0026499429
-
Conservation evaluation and phylogenetic diversity
-
Faith DP. 1992. Conservation evaluation and phylogenetic diversity. Biol Conserv 61:1-10. http://dx.doi.org/10.1016/0006-3207(92)91201-3.
-
(1992)
Biol Conserv
, vol.61
, pp. 1-10
-
-
Faith, D.P.1
-
36
-
-
0001886818
-
Generalized Procrustes analysis
-
Gower JC. 1975. Generalized Procrustes analysis. Psychometrika 40: 33-51. http://dx.doi.org/10.1007/BF02291478.
-
(1975)
Psychometrika
, vol.40
, pp. 33-51
-
-
Gower, J.C.1
-
37
-
-
78751575501
-
UniFrac: An effective distance metric for microbial community comparison
-
Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. 2011. UniFrac: an effective distance metric for microbial community comparison. ISME J 5:169-172. http://dx.doi.org/10.1038/ismej.2010.133.
-
(2011)
ISME J
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
38
-
-
73449128271
-
Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R. 2010. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4:17-27. http://dx.doi.org/10.1038/ismej.2009.97.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
39
-
-
84908264764
-
Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity
-
Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA. 2014. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. mBio 5:e01371-14. http://dx.doi.org/10.1128/mBio.01371-14.
-
(2014)
mBio
, vol.5
, pp. e01371-e01414
-
-
Shade, A.1
Jones, S.E.2
Caporaso, J.G.3
Handelsman, J.4
Knight, R.5
Fierer, N.6
Gilbert, J.A.7
-
40
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI. 2012. Human gut microbiome viewed across age and geography. Nature 486:222-227. http://dx.doi.org/10.1038/nature11053.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
41
-
-
84951059585
-
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
-
Westcott SL, Schloss PD. 2015. De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units. PeerJ 3:e14872. http://dx.doi.org/10.7717/peerj.1487.
-
(2015)
PeerJ
, vol.3
, pp. e14872
-
-
Westcott, S.L.1
Schloss, P.D.2
-
42
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the miseq Illumina sequencing platform
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. 2013. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the miseq Illumina sequencing platform. Appl Environ Microbiol 79:5112-5120. http://dx.doi.org/10.1128/AEM.01043-13.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
43
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6:e27310. http://dx.doi.org/10.1371/journal.pone.0027310.
-
(2011)
PLoS One
, vol.6
, pp. e27310
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
|