-
1
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger, A.M., Lohse, M., Usadel, B., Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (2014), 2114–2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
2
-
-
84899090573
-
Kraken: ultrafast metagenomic sequence classification using exact alignments
-
R46
-
Wood, D.E., Salzberg, S.L., Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biol, 15, 2014 R46.
-
(2014)
Genome Biol
, vol.15
-
-
Wood, D.E.1
Salzberg, S.L.2
-
3
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R., Lipman, D.J., Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85 (1988), 2444–2448.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
4
-
-
84991528460
-
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
-
Bradnam, K.R., Fass, J.N., Alexandrov, A., Baranay, P., Bechner, M., Birol, I., et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience, 2, 2013, 10.
-
(2013)
Gigascience
, vol.2
, pp. 10
-
-
Bradnam, K.R.1
Fass, J.N.2
Alexandrov, A.3
Baranay, P.4
Bechner, M.5
Birol, I.6
-
5
-
-
84901469882
-
Automated ensemble assembly and validation of microbial genomes
-
Koren, S., Treangen, T.J., Hill, C.M., Pop, M., Phillippy, A.M., Automated ensemble assembly and validation of microbial genomes. BMC Bioinform, 15, 2014, 126.
-
(2014)
BMC Bioinform
, vol.15
, pp. 126
-
-
Koren, S.1
Treangen, T.J.2
Hill, C.M.3
Pop, M.4
Phillippy, A.M.5
-
6
-
-
84908635320
-
GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers
-
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., et al. GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers. PLoS One, 9, 2014, e107014.
-
(2014)
PLoS One
, vol.9
, pp. e107014
-
-
Jünemann, S.1
Prior, K.2
Albersmeier, A.3
Albaum, S.4
Kalinowski, J.5
Goesmann, A.6
-
7
-
-
84876266928
-
QUAST: Quality assessment tool for genome assemblies
-
Gurevich, A., Saveliev, V., Vyahhi, N., Tesler, G., QUAST: Quality assessment tool for genome assemblies. Bioinformatics 29 (2013), 1072–1075.
-
(2013)
Bioinformatics
, vol.29
, pp. 1072-1075
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
8
-
-
84870822864
-
Tools for mapping high-throughput sequencing data
-
Fonseca, N.A., Rung, J., Brazma, A., Marioni, J.C., Tools for mapping high-throughput sequencing data. Bioinformatics 28 (2012), 3169–3177.
-
(2012)
Bioinformatics
, vol.28
, pp. 3169-3177
-
-
Fonseca, N.A.1
Rung, J.2
Brazma, A.3
Marioni, J.C.4
-
9
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat Methods 9 (2012), 357–359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
10
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H., Durbin, R., Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26 (2010), 589–595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
11
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. The sequence alignment/map format and SAMtools. Bioinformatics 25 (2009), 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
12
-
-
84986628152
-
A primer on infectious disease bacterial genomics
-
Lynch, T., Petkau, A., Knox, N., Graham, M., Van Domselaar, G., A primer on infectious disease bacterial genomics. Clin Microbiol Rev 29 (2016), 881–913.
-
(2016)
Clin Microbiol Rev
, vol.29
, pp. 881-913
-
-
Lynch, T.1
Petkau, A.2
Knox, N.3
Graham, M.4
Van Domselaar, G.5
-
13
-
-
84984869357
-
NCBI prokaryotic genome annotation pipeline
-
Tatusova, T., DiCuccio, M., Badretdin, A., Chetvernin, V., Nawrocki, E.P., Zaslavsky, L., et al. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44 (2016), 6614–6624.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. 6614-6624
-
-
Tatusova, T.1
DiCuccio, M.2
Badretdin, A.3
Chetvernin, V.4
Nawrocki, E.P.5
Zaslavsky, L.6
-
14
-
-
84891804612
-
The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST)
-
Overbeek, R., Olson, R., Pusch, G.D., Olsen, G.J., Davis, J.J., Disz, T., et al. The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res 42 (2014), D206–D214.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
-
15
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
Seemann, T., Prokka: rapid prokaryotic genome annotation. Bioinformatics 30 (2014), 2068–2069.
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
16
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A., et al. Artemis: sequence visualization and annotation. Bioinformatics 16 (2000), 944–945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
-
17
-
-
84858600509
-
Multilocus sequence typing of total-genome-sequenced bacteria
-
Larsen, M.V., Cosentino, S., Rasmussen, S., Friis, C., Hasman, H., Marvig, R.L., et al. Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol 50 (2012), 1355–1361.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 1355-1361
-
-
Larsen, M.V.1
Cosentino, S.2
Rasmussen, S.3
Friis, C.4
Hasman, H.5
Marvig, R.L.6
-
18
-
-
84952802043
-
Emergence of the same successful clade among distinct populations of emm89 Streptococcus pyogenes in multiple geographic regions
-
e01780–15
-
Friães, A., Machado, M.P., Pato, C., Carriço, J., Melo-Cristino, J., Ramirez, M., Emergence of the same successful clade among distinct populations of emm89 Streptococcus pyogenes in multiple geographic regions. MBio, 6, 2015 e01780–15.
-
(2015)
MBio
, vol.6
-
-
Friães, A.1
Machado, M.P.2
Pato, C.3
Carriço, J.4
Melo-Cristino, J.5
Ramirez, M.6
-
19
-
-
85013485261
-
A bioinformatics tool for ensuring the backwards compatibility of Legionella pneumophila typing in the genomic era
-
Gordon, M., Yakunin, E., Valinsky, L., Chalifa-Caspi, V., Moran-Gilad, J., ESCMID Study Group for Legionella Infections. A bioinformatics tool for ensuring the backwards compatibility of Legionella pneumophila typing in the genomic era. Clin Microbiol Infect 23 (2017), 306–310.
-
(2017)
Clin Microbiol Infect
, vol.23
, pp. 306-310
-
-
Gordon, M.1
Yakunin, E.2
Valinsky, L.3
Chalifa-Caspi, V.4
Moran-Gilad, J.5
-
20
-
-
84884290186
-
MLST revisited: the gene-by-gene approach to bacterial genomics
-
Maiden, M.C., Jansen van Rensburg, M.J., Bray, J.E., Earle, S.G., Ford, S.A., Jolley, K.A., et al. MLST revisited: the gene-by-gene approach to bacterial genomics. Nat Rev Microbiol 11 (2013), 728–736.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 728-736
-
-
Maiden, M.C.1
Jansen van Rensburg, M.J.2
Bray, J.E.3
Earle, S.G.4
Ford, S.A.5
Jolley, K.A.6
-
21
-
-
85021170217
-
PulseNet International: vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance
-
Van Walle, I., Gerner-Smidt, P., Campos, J., Chinen, I., Concepcion-Acevedo, J., Gilpin, B., et al. PulseNet International: vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. Euro Surveill, 22, 2017, 30544.
-
(2017)
Euro Surveill
, vol.22
, pp. 30544
-
-
Van Walle, I.1
Gerner-Smidt, P.2
Campos, J.3
Chinen, I.4
Concepcion-Acevedo, J.5
Gilpin, B.6
-
22
-
-
85021270816
-
A core genome multi-locus sequence typing scheme for stable, comparative analyses of Campylobacter jejuni and C. coli human disease isolates
-
Cody, A.J., Bray, J.E., Jolley, K.A., McCarthy, N.D., Maiden, M.C.J., A core genome multi-locus sequence typing scheme for stable, comparative analyses of Campylobacter jejuni and C. coli human disease isolates. J Clin Microbiol 55 (2017), 2086–2097.
-
(2017)
J Clin Microbiol
, vol.55
, pp. 2086-2097
-
-
Cody, A.J.1
Bray, J.E.2
Jolley, K.A.3
McCarthy, N.D.4
Maiden, M.C.J.5
-
23
-
-
84925594814
-
A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes
-
Bratcher, H.B., Corton, C., Jolley, K.A., Parkhill, J., Maiden, M.C.J., A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes. BMC Genomics, 15, 2014, 1138.
-
(2014)
BMC Genomics
, vol.15
, pp. 1138
-
-
Bratcher, H.B.1
Corton, C.2
Jolley, K.A.3
Parkhill, J.4
Maiden, M.C.J.5
-
24
-
-
85016165991
-
Whole genome–based population biology and epidemiological surveillance of Listeria monocytogenes
-
Moura, A., Criscuolo, A., Pouseele, H., Maury, M.M., Leclercq, A., Tarr, C., et al. Whole genome–based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol, 2, 2016, 16185.
-
(2016)
Nat Microbiol
, vol.2
, pp. 16185
-
-
Moura, A.1
Criscuolo, A.2
Pouseele, H.3
Maury, M.M.4
Leclercq, A.5
Tarr, C.6
-
25
-
-
84928036627
-
Refinement of whole-genome multilocus sequence typing analysis by addressing gene paralogy
-
Zhang, J., Halkilahti, J., Hänninen, M.L., Rossi, M., Refinement of whole-genome multilocus sequence typing analysis by addressing gene paralogy. J Clin Microbiol 53 (2015), 1765–1767.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 1765-1767
-
-
Zhang, J.1
Halkilahti, J.2
Hänninen, M.L.3
Rossi, M.4
-
26
-
-
85043691870
-
chewBBACA: a complete suite for gene-by-gene schema creation and strain identification
-
Silva, M., Machado, M.P., Silva, D.N., Rossi, M., Moran-Gilad, J., Santos, S., et al. chewBBACA: a complete suite for gene-by-gene schema creation and strain identification. bioRxiv, 2018, 10.1101/173146.
-
(2018)
bioRxiv
-
-
Silva, M.1
Machado, M.P.2
Silva, D.N.3
Rossi, M.4
Moran-Gilad, J.5
Santos, S.6
-
27
-
-
84947793096
-
Roary: rapid large-scale prokaryote pan genome analysis
-
Page, A.J., Cummins, C.A., Hunt, M., Wong, V.K., Reuter, S., Holden, M.T., et al. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics 31 (2015), 3691–3693.
-
(2015)
Bioinformatics
, vol.31
, pp. 3691-3693
-
-
Page, A.J.1
Cummins, C.A.2
Hunt, M.3
Wong, V.K.4
Reuter, S.5
Holden, M.T.6
-
28
-
-
84997283916
-
Rapid scoring of genes in microbial pan-genome–wide association studies with Scoary
-
Brynildsrud, O., Bohlin, J., Scheffer, L., Eldholm, V., Rapid scoring of genes in microbial pan-genome–wide association studies with Scoary. Genome Biol, 17, 2016, 238.
-
(2016)
Genome Biol
, vol.17
, pp. 238
-
-
Brynildsrud, O.1
Bohlin, J.2
Scheffer, L.3
Eldholm, V.4
-
29
-
-
85032474600
-
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations
-
Marinier, E., Zaheer, R., Berry, C., Weedmark, K.A., Domaratzki, M., Mabon, P., et al. Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations. Nucleic Acids Res, 45, 2017, e159.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. e159
-
-
Marinier, E.1
Zaheer, R.2
Berry, C.3
Weedmark, K.A.4
Domaratzki, M.5
Mabon, P.6
-
30
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C., et al. Versatile and open software for comparing large genomes. Genome Biol, 2004, 5.
-
(2004)
Genome Biol
, pp. 5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
-
31
-
-
84933069206
-
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
-
Croucher, N.J., Page, A.J., Connor, T.R., Delaney, A.J., Keane, J.A., Bentley, S.D., et al. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res, 43, 2015, e15.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. e15
-
-
Croucher, N.J.1
Page, A.J.2
Connor, T.R.3
Delaney, A.J.4
Keane, J.A.5
Bentley, S.D.6
-
32
-
-
84924405242
-
ClonalFrameML: efficient inference of recombination in whole bacterial genomes
-
Didelot, X., Wilson, D.J., ClonalFrameML: efficient inference of recombination in whole bacterial genomes. PLoS Comput Biol, 11, 2015, e1004041.
-
(2015)
PLoS Comput Biol
, vol.11
, pp. e1004041
-
-
Didelot, X.1
Wilson, D.J.2
-
33
-
-
85030710749
-
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
-
Petkau, A., Mabon, P., Sieffert, C., Knox, N.C., Cabral, J., Iskander, M., et al. SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. Microb Genom, 3, 2017, e000116.
-
(2017)
Microb Genom
, vol.3
, pp. e000116
-
-
Petkau, A.1
Mabon, P.2
Sieffert, C.3
Knox, N.C.4
Cabral, J.5
Iskander, M.6
-
34
-
-
85016616312
-
A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens
-
Katz, L.S., Griswold, T., Williams-Newkirk, A.J., Wagner, D., Petkau, A., Sieffert, C., et al. A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens. Front Microbiol, 8, 2017, 375.
-
(2017)
Front Microbiol
, vol.8
, pp. 375
-
-
Katz, L.S.1
Griswold, T.2
Williams-Newkirk, A.J.3
Wagner, D.4
Petkau, A.5
Sieffert, C.6
-
35
-
-
84973504216
-
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
-
Davis, S., Pettengill, J.B., Luo, Y., Payne, J., Shpuntoff, A., Rand, H., et al. CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data. PeerJ Comput Sci, 1, 2015, e20.
-
(2015)
PeerJ Comput Sci
, vol.1
, pp. e20
-
-
Davis, S.1
Pettengill, J.B.2
Luo, Y.3
Payne, J.4
Shpuntoff, A.5
Rand, H.6
-
36
-
-
85022158148
-
MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets
-
Kumar, S., Stecher, G., Tamura, K., MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33 (2016), 1870–1874.
-
(2016)
Mol Biol Evol
, vol.33
, pp. 1870-1874
-
-
Kumar, S.1
Stecher, G.2
Tamura, K.3
-
37
-
-
77949718257
-
FastTree 2—approximately maximum-likelihood trees for large alignments
-
Price, M.N., Dehal, P.S., Arkin, A.P., FastTree 2—approximately maximum-likelihood trees for large alignments. PLoS One, 5, 2010, e9490.
-
(2010)
PLoS One
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
38
-
-
84899553363
-
RAxML version 8:a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A., RAxML version 8:a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (2014), 1312–1313.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
39
-
-
84928040686
-
SRST2: rapid genomic surveillance for public health and hospital microbiology labs
-
Inouye, M., Dashnow, H., Raven, L.A., Schultz, M.B., Pope, B.J., Tomita, T., et al. SRST2: rapid genomic surveillance for public health and hospital microbiology labs. Genome Med, 6, 2014, 90.
-
(2014)
Genome Med
, vol.6
, pp. 90
-
-
Inouye, M.1
Dashnow, H.2
Raven, L.A.3
Schultz, M.B.4
Pope, B.J.5
Tomita, T.6
-
40
-
-
84996946612
-
Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing
-
Machado, M.P., Ribeiro-Gonçalves, B., Silva, M., Ramirez, M., Carriço, J.A., Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing. Methods Mol Biol 1520 (2017), 331–356.
-
(2017)
Methods Mol Biol
, vol.1520
, pp. 331-356
-
-
Machado, M.P.1
Ribeiro-Gonçalves, B.2
Silva, M.3
Ramirez, M.4
Carriço, J.A.5
-
41
-
-
85020736816
-
Comparative analyses of selection operating on nontranslated intergenic regions of diverse bacterial species
-
Thorpe, H.A., Bayliss, S.C., Hurst, L.D., Feil, E.J., Comparative analyses of selection operating on nontranslated intergenic regions of diverse bacterial species. Genetics 206 (2017), 363–376.
-
(2017)
Genetics
, vol.206
, pp. 363-376
-
-
Thorpe, H.A.1
Bayliss, S.C.2
Hurst, L.D.3
Feil, E.J.4
-
42
-
-
85011113621
-
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
-
Argimón, S., Abudahab, K., Goater, R.J., Fedosejev, A., Bhai, J., Glasner, C., et al. Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. Microb Genom, 2, 2016, e000093.
-
(2016)
Microb Genom
, vol.2
, pp. e000093
-
-
Argimón, S.1
Abudahab, K.2
Goater, R.J.3
Fedosejev, A.4
Bhai, J.5
Glasner, C.6
-
43
-
-
84880764850
-
GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework
-
Parks, D.H., Mankowski, T., Zangooei, S., Porter, M.S., Armanini, D.G., Baird, D.J., et al. GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework. PLoS One, 8, 2013, e69885.
-
(2013)
PLoS One
, vol.8
, pp. e69885
-
-
Parks, D.H.1
Mankowski, T.2
Zangooei, S.3
Porter, M.S.4
Armanini, D.G.5
Baird, D.J.6
-
44
-
-
85014853204
-
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
-
Nascimento, M., Sousa, A., Ramirez, M., Francisco, A.P., Carriço, J.A., Vaz, C., et al. PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinformatics 33 (2017), 128–129.
-
(2017)
Bioinformatics
, vol.33
, pp. 128-129
-
-
Nascimento, M.1
Sousa, A.2
Ramirez, M.3
Francisco, A.P.4
Carriço, J.A.5
Vaz, C.6
-
45
-
-
85014321086
-
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
-
Ribeiro-Gonçalves, B., Francisco, A.P., Vaz, C., Ramirez, M., Carriço, J.A., PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Res 44 (2016), W246–W251.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. W246-W251
-
-
Ribeiro-Gonçalves, B.1
Francisco, A.P.2
Vaz, C.3
Ramirez, M.4
Carriço, J.A.5
-
46
-
-
85016156501
-
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
-
Vallenet, D., Calteau, A., Cruveiller S, Gachet, M., Lajus, A., Josso, A., et al. MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. Nucleic Acids Res 45 (2017), D517–D528.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D517-D528
-
-
Vallenet, D.1
Calteau, A.2
Cruveiller, S.3
Gachet, M.4
Lajus, A.5
Josso, A.6
-
47
-
-
85023162253
-
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
-
Bertelli, C., Laird, M.R., Williams, K.P., Simon Fraser University Research Computing Group, Lau, B.Y., Hoad, G., et al. IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Res 45:Web Server issue (2018), W30–W35.
-
(2018)
Nucleic Acids Res
, vol.45
, Issue.Web Server issue
, pp. W30-W35
-
-
Bertelli, C.1
Laird, M.R.2
Williams, K.P.3
Simon Fraser University Research Computing Group4
Lau, B.Y.5
Hoad, G.6
-
48
-
-
85016050964
-
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
-
Jia, B., Raphenya, A.R., Alcock, B., Waglechner, N., Guo, P., et al. CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. Nucleic Acids Res 45 (2017), D566–D573.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D566-D573
-
-
Jia, B.1
Raphenya, A.R.2
Alcock, B.3
Waglechner, N.4
Guo, P.5
-
49
-
-
84976869393
-
VFDB 2016: Hierarchical and refined dataset for big data analysis—10 years on
-
D694–7
-
Chen, L., Zheng, D., Liu, B., Yang, J., Jin, Q., VFDB 2016: Hierarchical and refined dataset for big data analysis—10 years on. Nucleic Acids Res, 44, 2016 D694–7.
-
(2016)
Nucleic Acids Res
, vol.44
-
-
Chen, L.1
Zheng, D.2
Liu, B.3
Yang, J.4
Jin, Q.5
-
50
-
-
84862100340
-
ICEberg: a web-based resource for integrative and conjugative elements found in bacteria
-
Bi, D., Xu, Z., Harrison, E.M., Tai C, Wei, Y., He, X., et al. ICEberg: a web-based resource for integrative and conjugative elements found in bacteria. Nucleic Acids Res 40 (2012), D621–D626.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D621-D626
-
-
Bi, D.1
Xu, Z.2
Harrison, E.M.3
Tai, C.4
Wei, Y.5
He, X.6
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