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Volumn 46, Issue D1, 2018, Pages D296-D302

MiRTarBase update 2018: A resource for experimentally validated microRNA-target interactions

(36)  Chou, Chih Hung a   Shrestha, Sirjana a   Yang, Chi Dung a,b   Chang, Nai Wen c   Lin, Yu Ling a   Liao, Kuang Wen a   Huang, Wei Chi a   Sun, Ting Hsuan a   Tu, Siang Jyun a   Lee, Wei Hsiang a,d   Chiew, Men Yee a   Tai, Chun San a   Wei, Ting Yen e   Tsai, Tzi Ren a   Huang, Hsin Tzu a   Wang, Chung Yu a   Wu, Hsin Yi a   Ho, Shu Yi a   Chen, Pin Rong a   Chuang, Cheng Hsun a   more..


Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASSAY; CONTROLLED STUDY; DATA ANALYSIS; DATA BASE; DATA MINING; INFORMATION PROCESSING; INTERMETHOD COMPARISON; MACHINE LEARNING; MIRTARBASE; MIRTARBASE 6.0; PRIORITY JOURNAL; REPORTER ASSAY; CHEMISTRY; COMPUTER INTERFACE; GENETIC DATABASE; HUMAN; METABOLISM;

EID: 85040945128     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx1067     Document Type: Article
Times cited : (1477)

References (49)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D.P. (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 77956512219 scopus 로고    scopus 로고
    • MicroRNA as a newplayer in the cell cycle
    • Chen, D., Farwell, M.A., Zhang, B. (2010) MicroRNA as a newplayer in the cell cycle. J. Cell. Physiol., 225, 296-301.
    • (2010) J. Cell. Physiol. , vol.225 , pp. 296-301
    • Chen, D.1    Farwell, M.A.2    Zhang, B.3
  • 3
    • 33845242919 scopus 로고    scopus 로고
    • MicroRNAs: Regulators of gene expressionand cell differentiation
    • Shivdasani, R.A. (2006) MicroRNAs: Regulators of gene expressionand cell differentiation. Blood, 108, 3646-3653.
    • (2006) Blood , vol.108 , pp. 3646-3653
    • Shivdasani, R.A.1
  • 5
    • 84891818318 scopus 로고    scopus 로고
    • MiRBase: Annotatinghigh confidence microRNAs using deep sequencing data
    • Kozomara, A., Griffiths-Jones, S. (2014) miRBase: Annotatinghigh confidence microRNAs using deep sequencing data. NucleicAcids Res., 42, D68-D73.
    • (2014) NucleicAcids Res. , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 7
    • 84891781832 scopus 로고    scopus 로고
    • HMDD v2. 0: A database for experimentally supported humanmicroRNA and disease associations
    • Li, Y., Qiu, C., Tu, J., Geng, B., Yang, J., Jiang, T., Cui, Q. (2014)HMDD v2. 0: A database for experimentally supported humanmicroRNA and disease associations. Nucleic Acids Res., 42, D1070-D1074.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D1070-D1074
    • Li, Y.1    Qiu, C.2    Tu, J.3    Geng, B.4    Yang, J.5    Jiang, T.6    Cui, Q.7
  • 8
    • 58149179989 scopus 로고    scopus 로고
    • MiR2Disease: A manually curateddatabase for microRNA deregulation in human disease
    • Jiang, Q., Wang, Y., Hao, Y., Juan, L., Teng, M., Zhang, X., Li, M., Wang, G., Liu, Y. (2009) miR2Disease: A manually curateddatabase for microRNA deregulation in human disease. Nucleic AcidsRes., 37, D98-D104.
    • (2009) Nucleic AcidsRes. , vol.37 , pp. D98-D104
    • Jiang, Q.1    Wang, Y.2    Hao, Y.3    Juan, L.4    Teng, M.5    Zhang, X.6    Li, M.7    Wang, G.8    Liu, Y.9
  • 9
    • 33745248430 scopus 로고    scopus 로고
    • MicroRNA target predictions in animals
    • Rajewsky, N. (2006) microRNA target predictions in animals. Nat.Genet., 38(Suppl), S8-S13.
    • (2006) Nat.Genet. , vol.38 , pp. S8-S13
    • Rajewsky, N.1
  • 10
    • 33748346026 scopus 로고    scopus 로고
    • Perfect seed pairing is not agenerally reliable predictor for miRNA-target interactions
    • Didiano, D., Hobert, O. (2006) Perfect seed pairing is not agenerally reliable predictor for miRNA-target interactions. Nat.Struct. Mol. Biol., 13, 849-851.
    • (2006) Nat.Struct. Mol. Biol. , vol.13 , pp. 849-851
    • Didiano, D.1    Hobert, O.2
  • 11
    • 80052451056 scopus 로고    scopus 로고
    • Experimentalstrategies for microRNA target identification
    • Thomson, D.W., Bracken, C.P., Goodall, G.J. (2011) Experimentalstrategies for microRNA target identification. Nucleic Acids Res., 39, 6845-6853.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6845-6853
    • Thomson, D.W.1    Bracken, C.P.2    Goodall, G.J.3
  • 13
    • 84945480046 scopus 로고    scopus 로고
    • ValidatedMicroRNA Target Databases: An evaluation
    • Lee, Y.J., Kim, V., Muth, D.C., Witwer, K.W. (2015) ValidatedMicroRNA Target Databases: An evaluation. Drug Dev. Res., 76, 389-396.
    • (2015) Drug Dev. Res. , vol.76 , pp. 389-396
    • Lee, Y.J.1    Kim, V.2    Muth, D.C.3    Witwer, K.W.4
  • 14
    • 27944508215 scopus 로고    scopus 로고
    • CLIP: A methodfor identifying protein-RNA interaction sites in living cells
    • Ule, J., Jensen, K., Mele, A., Darnell, R.B. (2005) CLIP: A methodfor identifying protein-RNA interaction sites in living cells. Methods, 37, 376-386.
    • (2005) Methods , vol.37 , pp. 376-386
    • Ule, J.1    Jensen, K.2    Mele, A.3    Darnell, R.B.4
  • 16
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH revealsfrequent noncanonical binding
    • Helwak, A., Kudla, G., Dudnakova, T., Tollervey, D. (2013)Mapping the human miRNA interactome by CLASH revealsfrequent noncanonical binding. Cell, 153, 654-665.
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 22
    • 84940502214 scopus 로고    scopus 로고
    • Predictingeffective microRNA target sites in mammalian mRNAs
    • Agarwal, V., Bell, G.W., Nam, J.W., Bartel, D.P. (2015) Predictingeffective microRNA target sites in mammalian mRNAs. Elife, 4, doi:10.7554/eLife.05005.
    • (2015) Elife , pp. 4
    • Agarwal, V.1    Bell, G.W.2    Nam, J.W.3    Bartel, D.P.4
  • 23
    • 77955963884 scopus 로고    scopus 로고
    • Comprehensive modeling of microRNA targets predicts functionalnon-conserved and non-canonical sites
    • Betel, D., Koppal, A., Agius, P., Sander, C., Leslie, C. (2010)Comprehensive modeling of microRNA targets predicts functionalnon-conserved and non-canonical sites. Genome Biol., 11, R90.
    • (2010) Genome Biol. , vol.11 , pp. R90
    • Betel, D.1    Koppal, A.2    Agius, P.3    Sander, C.4    Leslie, C.5
  • 25
    • 84957073007 scopus 로고    scopus 로고
    • Web-TCGA: An online platform for integrated analysis of molecularcancer data sets
    • Deng, M., Bragelmann, J., Schultze, J.L., Perner, S. (2016)Web-TCGA: An online platform for integrated analysis of molecularcancer data sets. BMC Bioinformatics, 17, 72.
    • (2016) BMC Bioinformatics , vol.17 , pp. 72
    • Deng, M.1    Bragelmann, J.2    Schultze, J.L.3    Perner, S.4
  • 26
    • 84934922563 scopus 로고    scopus 로고
    • The CancerGenome Atlas (TCGA): An immeasurable source of knowledge
    • Tomczak, K., Czerwinska, P., Wiznerowicz, M. (2015) The CancerGenome Atlas (TCGA): An immeasurable source of knowledge.Contemp Oncol (Pozn), 19, A68-A77.
    • (2015) Contemp Oncol (Pozn) , vol.19 , pp. A68-A77
    • Tomczak, K.1    Czerwinska, P.2    Wiznerowicz, M.3
  • 28
    • 61449172037 scopus 로고    scopus 로고
    • Systematicand integrative analysis of large gene lists using DAVIDbioinformatics resources
    • Huang da, W., Sherman, B.T., Lempicki, R.A. (2009) Systematicand integrative analysis of large gene lists using DAVIDbioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 29
    • 85025426270 scopus 로고    scopus 로고
    • Argonaute CLIPdefines a deregulated miR-122-bound transcriptome that correlateswith patient survival in human liver cancer
    • Luna, J.M., Barajas, J.M., Teng, K.Y., Sun, H.L., Moore, M.J., Rice, C.M., Darnell, R.B., Ghoshal, K. (2017) Argonaute CLIPdefines a deregulated miR-122-bound transcriptome that correlateswith patient survival in human liver cancer. Mol. Cell, 67, 400-410.
    • (2017) Mol. Cell , vol.67 , pp. 400-410
    • Luna, J.M.1    Barajas, J.M.2    Teng, K.Y.3    Sun, H.L.4    Moore, M.J.5    Rice, C.M.6    Darnell, R.B.7    Ghoshal, K.8
  • 35
    • 84874726726 scopus 로고    scopus 로고
    • MiRCancer: AmicroRNA-cancer association database constructed by text miningon literature
    • Xie, B., Ding, Q., Han, H., Wu, D. (2013) miRCancer: AmicroRNA-cancer association database constructed by text miningon literature. Bioinformatics, 29, 638-644.
    • (2013) Bioinformatics , vol.29 , pp. 638-644
    • Xie, B.1    Ding, Q.2    Han, H.3    Wu, D.4
  • 36
    • 77952304446 scopus 로고    scopus 로고
    • MiRSel:automated extraction of associations between microRNAs and genesfrom the biomedical literature
    • Naeem, H., Kuffner, R., Csaba, G., Zimmer, R. (2010) miRSel:automated extraction of associations between microRNAs and genesfrom the biomedical literature. BMC Bioinformatics, 11, 135.
    • (2010) BMC Bioinformatics , vol.11 , pp. 135
    • Naeem, H.1    Kuffner, R.2    Csaba, G.3    Zimmer, R.4
  • 40
    • 84928743034 scopus 로고    scopus 로고
    • Asemantic frame-based intelligent agent for topic detection
    • Chang, Y.-C., Hsieh, Y.-L., Chen, C.-C., Hsu, W.-L. (2017) Asemantic frame-based intelligent agent for topic detection. SoftComput., 21, 391-401.
    • (2017) SoftComput. , vol.21 , pp. 391-401
    • Chang, Y.-C.1    Hsieh, Y.-L.2    Chen, C.-C.3    Hsu, W.-L.4
  • 41
    • 85014857159 scopus 로고    scopus 로고
    • Super-enhancer-mediated RNA processing revealed by integrativeMicroRNA network analysis
    • Suzuki, H.I., Young, R.A., Sharp, P.A. (2017)Super-enhancer-mediated RNA processing revealed by integrativeMicroRNA network analysis. Cell, 168, 1000-1014.
    • (2017) Cell , vol.168 , pp. 1000-1014
    • Suzuki, H.I.1    Young, R.A.2    Sharp, P.A.3
  • 42
    • 84984656923 scopus 로고    scopus 로고
    • Genome-wide, integrative analysis implicates microRNAdysregulation in autism spectrum disorder
    • Wu, Y.E., Parikshak, N.N., Belgard, T.G., Geschwind, D.H. (2016)Genome-wide, integrative analysis implicates microRNAdysregulation in autism spectrum disorder. Nat. Neurosci., 19, 1463-1476.
    • (2016) Nat. Neurosci. , vol.19 , pp. 1463-1476
    • Wu, Y.E.1    Parikshak, N.N.2    Belgard, T.G.3    Geschwind, D.H.4
  • 44
    • 85013059434 scopus 로고    scopus 로고
    • MicroRNA therapeutics:towards a new era for the management of cancer and other diseases
    • Rupaimoole, R., Slack, F.J. (2017) MicroRNA therapeutics:towards a new era for the management of cancer and other diseases.Nat. Rev. Drug Discov., 16, 203-222.
    • (2017) Nat. Rev. Drug Discov. , vol.16 , pp. 203-222
    • Rupaimoole, R.1    Slack, F.J.2
  • 45
    • 84937022353 scopus 로고    scopus 로고
    • DynamicalRegulation analysis identifies molecular mechanisms offuzheng-huayu formula against hepatitis b-caused liver cirrhosis. Evidence-based complement
    • Chen, Q.L., Lu, Y.Y., Peng, J.H., Dong, S., Wei, B., Song, Y.N., Zhou, Q.M., Zhang, H., Liu, P., Su, S.B. (2015) DynamicalRegulation Analysis Identifies Molecular Mechanisms ofFuzheng-Huayu Formula against Hepatitis B-Caused Liver Cirrhosis.Evidence-based Complement. AlternativeMed.: ECAM, 2015, 238-495.
    • (2015) AlternativeMed.: ECAM , vol.2015 , pp. 238-495
    • Chen, Q.L.1    Lu, Y.Y.2    Peng, J.H.3    Dong, S.4    Wei, B.5    Song, Y.N.6    Zhou, Q.M.7    Zhang, H.8    Liu, P.9    Su, S.B.10
  • 46
    • 80155151016 scopus 로고    scopus 로고
    • Networkanalysis of microRNAs and their regulation in human ovariancancer
    • Schmeier, S., Schaefer, U., Essack, M., Bajic, V.B. (2011) Networkanalysis of microRNAs and their regulation in human ovariancancer. Bmc Syst. Biol., 5.
    • (2011) Bmc Syst. Biol. , pp. 5
    • Schmeier, S.1    Schaefer, U.2    Essack, M.3    Bajic, V.B.4
  • 47
    • 84954502517 scopus 로고    scopus 로고
    • Comparison of prognostic MicroRNA biomarkers in blood andtissues for gastric cancer
    • Yan, W.Y., Qian, L.J., Chen, J.J., Chen, W.C., Shen, B.R. (2016)Comparison of prognostic MicroRNA biomarkers in blood andtissues for gastric cancer. J. Cancer, 7, 95-106.
    • (2016) J. Cancer , vol.7 , pp. 95-106
    • Yan, W.Y.1    Qian, L.J.2    Chen, J.J.3    Chen, W.C.4    Shen, B.R.5
  • 48
    • 85016138846 scopus 로고    scopus 로고
    • Integratedgenomic and molecular characterization of cervical cancer
    • Cancer Genome Atlas Research, N Albert Einstein College of M., Analytical Biological, S., Barretos Cancer, H., Baylor College of, M., Beckman Research Institute of City of, H., Buck Institute forResearch on, A., Canada's Michael Smith Genome Sciences, C., Harvard Medical, S.
    • Cancer Genome Atlas Research, N., Albert Einstein College of, M., Analytical Biological, S., Barretos Cancer, H., Baylor College of, M., Beckman Research Institute of City of, H., Buck Institute forResearch on, A., Canada's Michael Smith Genome Sciences, C., Harvard Medical, S., Helen, F.G.C.C., et al. (2017) Integratedgenomic and molecular characterization of cervical cancer. Nature, 543, 378-384.
    • (2017) Nature , vol.543 , pp. 378-384
    • Helen, F.G.C.C.1
  • 49
    • 85026888109 scopus 로고    scopus 로고
    • Integratedgenomic characterization of pancreatic ductal adenocarcinoma
    • Cancer Genome Atlas Research Network. Electronic address, a.a.d.h.e., Cancer Genome Atlas Research, N
    • Cancer Genome Atlas Research Network. Electronic address, a.a.d.h.e., Cancer Genome Atlas Research, N. (2017) Integratedgenomic characterization of pancreatic ductal adenocarcinoma.Cancer Cell, 32, 185-203.
    • (2017) Cancer Cell , vol.32 , pp. 185-203


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