-
1
-
-
84881023853
-
Flow-cytometric analysis of rare antigen-specific T cells
-
Bacher,P. and Scheffold,A. (2013) Flow-cytometric analysis of rare antigen-specific T cells. Cytometry A, 83, 692-701.
-
(2013)
Cytometry A
, vol.83
, pp. 692-701
-
-
Bacher, P.1
Scheffold, A.2
-
2
-
-
0037252714
-
IMGT, the international ImMunoGeneTics database
-
Lefranc,M.P. (2003) IMGT, the international ImMunoGeneTics database. Nucleic Acids Res., 31, 307-310.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 307-310
-
-
Lefranc, M.P.1
-
3
-
-
84946076702
-
The immune epitope database (IEDB) 3.0
-
Vita,R., Overton,J.A., Greenbaum,J.A., Ponomarenko,J., Clark,J.D., Cantrell,J.R., Wheeler,D.K., Gabbard,J.L., Hix,D., Sette,A. et al. (2015) The immune epitope database (IEDB) 3.0. Nucleic Acids Res., 43, D405-D412.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D405-D412
-
-
Vita, R.1
Overton, J.A.2
Greenbaum, J.A.3
Ponomarenko, J.4
Clark, J.D.5
Cantrell, J.R.6
Wheeler, D.K.7
Gabbard, J.L.8
Hix, D.9
Sette, A.10
-
4
-
-
85029215405
-
McPAS-TCR: A manually-curated catalogue of pathology-associated T-cell receptor sequences
-
Tickotsky,N., Sagiv,T., Prilusky,J., Shifrut,E. and Friedman,N. (2017) McPAS-TCR: a manually-curated catalogue of pathology-associated T-cell receptor sequences. Bioinformatics, doi:10.1093/bioinformatics/btx286.
-
(2017)
Bioinformatics
-
-
Tickotsky, N.1
Sagiv, T.2
Prilusky, J.3
Shifrut, E.4
Friedman, N.5
-
5
-
-
84856185049
-
Rep-Seq: Uncovering the immunological repertoire through next-generation sequencing
-
Benichou,J., Ben-Hamo,R., Louzoun,Y. and Efroni,S. (2012) Rep-Seq: uncovering the immunological repertoire through next-generation sequencing. Immunology, 135, 183-191.
-
(2012)
Immunology
, vol.135
, pp. 183-191
-
-
Benichou, J.1
Ben-Hamo, R.2
Louzoun, Y.3
Efroni, S.4
-
6
-
-
84875520974
-
A molecular basis for the control of preimmune escape variants by HIV-specific CD8+ T cells
-
Ladell,K., Hashimoto,M., Iglesias,M.C., Wilmann,P.G., McLaren,J.E., Gras,S., Chikata,T., Kuse,N., Fastenackels,S., Gostick,E. et al. (2013) A molecular basis for the control of preimmune escape variants by HIV-specific CD8+ T cells. Immunity, 38, 425-436.
-
(2013)
Immunity
, vol.38
, pp. 425-436
-
-
Ladell, K.1
Hashimoto, M.2
Iglesias, M.C.3
Wilmann, P.G.4
McLaren, J.E.5
Gras, S.6
Chikata, T.7
Kuse, N.8
Fastenackels, S.9
Gostick, E.10
-
7
-
-
65549116509
-
Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection
-
Price,D.A., Asher,T.E., Wilson,N.A., Nason,M.C., Brenchley,J.M., Metzler,I.S., Venturi,V., Gostick,E., Chattopadhyay,P.K., Roederer,M. et al. (2009) Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection. J. Exp. Med., 206, 923-936.
-
(2009)
J. Exp. Med.
, vol.206
, pp. 923-936
-
-
Price, D.A.1
Asher, T.E.2
Wilson, N.A.3
Nason, M.C.4
Brenchley, J.M.5
Metzler, I.S.6
Venturi, V.7
Gostick, E.8
Chattopadhyay, P.K.9
Roederer, M.10
-
8
-
-
84880289310
-
Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization
-
Newell,E.W., Sigal,N., Nair,N., Kidd,B.A., Greenberg,H.B. and Davis,M.M. (2013) Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization. Nat. Biotechnol., 31, 623-629.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 623-629
-
-
Newell, E.W.1
Sigal, N.2
Nair, N.3
Kidd, B.A.4
Greenberg, H.B.5
Davis, M.M.6
-
9
-
-
84938363499
-
More tricks with tetramers: A practical guide to staining T cells with peptide-MHC multimers
-
Dolton,G., Tungatt,K., Lloyd,A., Bianchi,V., Theaker,S.M., Trimby,A., Holland,C.J., Donia,M., Godkin,A.J., Cole,D.K. et al. (2015) More tricks with tetramers: a practical guide to staining T cells with peptide-MHC multimers. Immunology, 146, 11-22.
-
(2015)
Immunology
, vol.146
, pp. 11-22
-
-
Dolton, G.1
Tungatt, K.2
Lloyd, A.3
Bianchi, V.4
Theaker, S.M.5
Trimby, A.6
Holland, C.J.7
Donia, M.8
Godkin, A.J.9
Cole, D.K.10
-
10
-
-
55949108193
-
Techniques to improve the direct ex vivo detection of low frequency antigen-specific CD8+ T cells with peptide-major histocompatibility complex class i tetramers
-
Chattopadhyay,P.K.,Melenhorst,J.J., Ladell,K., Gostick,E., Scheinberg,P., Barrett,A.J., Wooldridge,L., Roederer,M., Sewell,A.K. and Price,D.A. (2008) Techniques to improve the direct ex vivo detection of low frequency antigen-specific CD8+ T cells with peptide-major histocompatibility complex class I tetramers. Cytometry A, 73, 1001-1009.
-
(2008)
Cytometry A
, vol.73
, pp. 1001-1009
-
-
Chattopadhyay, P.K.1
Melenhorst, J.J.2
Ladell, K.3
Gostick, E.4
Scheinberg, P.5
Barrett, A.J.6
Wooldridge, L.7
Roederer, M.8
Sewell, A.K.9
Price, D.A.10
-
11
-
-
0025361125
-
The use of anti-CD3 and anti-CD28 monoclonal antibodies to clone and expand human antigen-specific T cells
-
Riddell,S.R. and Greenberg,P.D. (1990) The use of anti-CD3 and anti-CD28 monoclonal antibodies to clone and expand human antigen-specific T cells. J. Immunol. Methods, 128, 189-201.
-
(1990)
J. Immunol. Methods
, vol.128
, pp. 189-201
-
-
Riddell, S.R.1
Greenberg, P.D.2
-
12
-
-
84949293684
-
VDJtools: Unifying post-analysis of T-cell receptor repertoires
-
Shugay,M., Bagaev,D.V., Turchaninova,M.A., Bolotin,D.A., Britanova,O.V., Putintseva,E.V., Pogorelyy,M.V., Nazarov,V.I., Zvyagin,I.V., Kirgizova,V.I. et al. (2015) VDJtools: unifying post-analysis of T-cell receptor repertoires. PLoS Comput. Biol., 11, e1004503.
-
(2015)
PLoS Comput. Biol.
, vol.11
, pp. e1004503
-
-
Shugay, M.1
Bagaev, D.V.2
Turchaninova, M.A.3
Bolotin, D.A.4
Britanova, O.V.5
Putintseva, E.V.6
Pogorelyy, M.V.7
Nazarov, V.I.8
Zvyagin, I.V.9
Kirgizova, V.I.10
-
13
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon,P., Markiel,A., Ozier,O., Baliga,N.S., Wang,J.T., Ramage,D., Amin,N., Schwikowski,B. and Ideker,T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
14
-
-
10344231446
-
T-cell receptor recognition motifs govern immune escape patterns in acute SIV infection
-
Price,D.A., West,S.M., Betts,M.R., Ruff,L.E., Brenchley,J.M., Ambrozak,D.R., Edghill-Smith,Y., Kuroda,M.J., Bogdan,D., Kunstman,K. et al. (2004) T-cell receptor recognition motifs govern immune escape patterns in acute SIV infection. Immunity, 21, 793-803.
-
(2004)
Immunity
, vol.21
, pp. 793-803
-
-
Price, D.A.1
West, S.M.2
Betts, M.R.3
Ruff, L.E.4
Brenchley, J.M.5
Ambrozak, D.R.6
Edghill-Smith, Y.7
Kuroda, M.J.8
Bogdan, D.9
Kunstman, K.10
-
15
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks,G.E., Hon,G., Chandonia,J.M. and Brenner,S.E. (2004) WebLogo: a sequence logo generator. Genome Res., 14, 1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
16
-
-
84907001176
-
Diversity and clonal selection in the human T-cell repertoire
-
Qi,Q., Liu,Y., Cheng,Y., Glanville,J., Zhang,D., Lee,J.Y., Olshen,R.A., Weyand,C.M., Boyd,S.D. and Goronzy,J.J. (2014) Diversity and clonal selection in the human T-cell repertoire. Proc. Natl. Acad. Sci. U.S.A., 111, 13139-13144.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 13139-13144
-
-
Qi, Q.1
Liu, Y.2
Cheng, Y.3
Glanville, J.4
Zhang, D.5
Lee, J.Y.6
Olshen, R.A.7
Weyand, C.M.8
Boyd, S.D.9
Goronzy, J.J.10
-
17
-
-
84974834896
-
Dynamics of individual T-cell repertoires: From cord blood to centenarians
-
Britanova,O.V., Shugay,M.,Merzlyak,E.M., Staroverov,D.B., Putintseva,E.V., Turchaninova,M.A., Mamedov,I.Z., Pogorelyy,M.V., Bolotin,D.A., Izraelson,M. et al. (2016) Dynamics of individual T-cell repertoires: from cord blood to centenarians. J. Immunol., 196, 5005-5013.
-
(2016)
J. Immunol.
, vol.196
, pp. 5005-5013
-
-
Britanova, O.V.1
Shugay, M.2
Merzlyak, E.M.3
Staroverov, D.B.4
Putintseva, E.V.5
Turchaninova, M.A.6
Mamedov, I.Z.7
Pogorelyy, M.V.8
Bolotin, D.A.9
Izraelson, M.10
-
18
-
-
78649992006
-
Human cytomegalovirus-specific CD8(+) T-cell expansions contain long-lived cells that retain functional capacity in both young and elderly subjects
-
Wallace,D.L., Masters,J.E., De Lara,C.M., Henson,S.M.,Worth,A., Zhang,Y., Kumar,S.R., Beverley,P.C., Akbar,A.N. and Macallan,D.C. (2011) Human cytomegalovirus-specific CD8(+) T-cell expansions contain long-lived cells that retain functional capacity in both young and elderly subjects. Immunology, 132, 27-38.
-
(2011)
Immunology
, vol.132
, pp. 27-38
-
-
Wallace, D.L.1
Masters, J.E.2
De Lara, C.M.3
Henson, S.M.4
Worth, A.5
Zhang, Y.6
Kumar, S.R.7
Beverley, P.C.8
Akbar, A.N.9
Macallan, D.C.10
-
19
-
-
16344376370
-
Inflamm-ageing and lifelong antigenic load as major determinants of ageing rate and longevity
-
De Martinis,M., Franceschi,C., Monti,D. and Ginaldi,L. (2005) Inflamm-ageing and lifelong antigenic load as major determinants of ageing rate and longevity. FEBS Lett., 579, 2035-2039.
-
(2005)
FEBS Lett.
, vol.579
, pp. 2035-2039
-
-
De Martinis, M.1
Franceschi, C.2
Monti, D.3
Ginaldi, L.4
-
20
-
-
85022212188
-
Quantifiable predictive features define epitope-specific T-cell receptor repertoires
-
Dash,P., Fiore-Gartland,A.J., Hertz,T., Wang,G.C., Sharma,S., Souquette,A., Crawford,J.C., Clemens,E.B., Nguyen,T.H.O., Kedzierska,K. et al. (2017) Quantifiable predictive features define epitope-specific T-cell receptor repertoires. Nature, 547, 89-93.
-
(2017)
Nature
, vol.547
, pp. 89-93
-
-
Dash, P.1
Fiore-Gartland, A.J.2
Hertz, T.3
Wang, G.C.4
Sharma, S.5
Souquette, A.6
Crawford, J.C.7
Clemens, E.B.8
Nguyen, T.H.O.9
Kedzierska, K.10
-
21
-
-
85022229481
-
Identifying specificity groups in the T-cell receptor repertoire
-
Glanville,J., Huang,H., Nau,A., Hatton,O., Wagar,L.E., Rubelt,F., Ji,X., Han,A., Krams,S.M., Pettus,C. et al. (2017) Identifying specificity groups in the T-cell receptor repertoire. Nature, 547, 94-98.
-
(2017)
Nature
, vol.547
, pp. 94-98
-
-
Glanville, J.1
Huang, H.2
Nau, A.3
Hatton, O.4
Wagar, L.E.5
Rubelt, F.6
Ji, X.7
Han, A.8
Krams, S.M.9
Pettus, C.10
-
22
-
-
85052300336
-
High-throughput sequencing of the T-cell receptor repertoire: Pitfalls and opportunities
-
Heather,J.M., Ismail,M., Oakes,T. and Chain,B. (2017) High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities. Brief. Bioinform., doi:10.1093/bib/bbw138.
-
(2017)
Brief. Bioinform
-
-
Heather, J.M.1
Ismail, M.2
Oakes, T.3
Chain, B.4
-
23
-
-
73949100822
-
Molecular immunology lessons from therapeutic T-cell receptor gene transfer
-
Thomas,S., Stauss,H.J. and Morris,E.C. (2010) Molecular immunology lessons from therapeutic T-cell receptor gene transfer. Immunology, 129, 170-177.
-
(2010)
Immunology
, vol.129
, pp. 170-177
-
-
Thomas, S.1
Stauss, H.J.2
Morris, E.C.3
|