메뉴 건너뛰기




Volumn 50, Issue 1, 2018, Pages 42-50

Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks

(175)  Demenais, Florence a,b   Margaritte Jeannin, Patricia a,b   Barnes, Kathleen C c   Cookson, William O C d   Altmüller, Janine e   Ang, Wei f   Barr, R Graham g   Beaty, Terri H h   Becker, Allan B i   Beilby, John j   Bisgaard, Hans k   Bjornsdottir, Unnur Steina l   Bleecker, Eugene m   Bønnelykke, Klaus k   Boomsma, Dorret I n   Bouzigon, Emmanuelle a,b   Brightling, Christopher E o   Brossard, Myriam a,b   Brusselle, Guy G p,q   Burchard, Esteban r   more..

a INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CDK12 PROTEIN; DEOXYRIBONUCLEASE I; EPIDERMAL GROWTH FACTOR RECEPTOR 2; GSDMA PROTEIN; GSDMB PROTEIN; HLA C ANTIGEN; INTERLEUKIN 13; INTERLEUKIN 4; LST1 PROTEIN; LTA PROTEIN; ORMDL3 PROTEIN; PGAP3 PROTEIN; PROTEIN; PROTEIN KINASE B; STAT6 PROTEIN; TRANSCRIPTION FACTOR BACH2; TRANSCRIPTION FACTOR GATA 3; UNCLASSIFIED DRUG;

EID: 85039152884     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/s41588-017-0014-7     Document Type: Article
Times cited : (381)

References (48)
  • 3
    • 84891790401 scopus 로고    scopus 로고
    • The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
    • Welter, D. et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res. 42, D1001-D1006 (2014)
    • (2014) Nucleic Acids Res , vol.42 , pp. D1001-D1006
    • Welter, D.1
  • 4
    • 84922746494 scopus 로고    scopus 로고
    • Ethnic-specific associations of rare and low-frequency DNA sequence variants with asthma
    • Igartua, C. et al. Ethnic-specific associations of rare and low-frequency DNA sequence variants with asthma. Nat. Commun. 6, 5965 (2015)
    • (2015) Nat. Commun , vol.6 , pp. 5965
    • Igartua, C.1
  • 5
    • 57349101088 scopus 로고    scopus 로고
    • Effect of 17q21 variants and smoking exposure in early-onset asthma
    • Bouzigon, E. et al. Effect of 17q21 variants and smoking exposure in early-onset asthma. N. Engl. J. Med. 359, 1985-1994 (2008)
    • (2008) N. Engl. J. Med , vol.359 , pp. 1985-1994
    • Bouzigon, E.1
  • 6
    • 84905595372 scopus 로고    scopus 로고
    • Genome-wide association study and admixture mapping identify different asthma-associated loci in Latinos: The Genes-environments &Admixture in Latino Americans study
    • Galanter, J. M. et al. Genome-wide association study and admixture mapping identify different asthma-associated loci in Latinos: the Genes-environments &Admixture in Latino Americans study. J. Allergy Clin. Immunol. 134, 295-305 (2014)
    • (2014) J. Allergy Clin. Immunol , vol.134 , pp. 295-305
    • Galanter, J.M.1
  • 7
    • 80052273202 scopus 로고    scopus 로고
    • Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population
    • Hirota, T. et al. Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population. Nat. Genet. 43, 893-896 (2011)
    • (2011) Nat. Genet , vol.43 , pp. 893-896
    • Hirota, T.1
  • 8
    • 84901754015 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype
    • Ferreira, M. A. et al. Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype. J. Allergy Clin. Immunol. 133, 1564-1571 (2014)
    • (2014) J. Allergy Clin. Immunol , vol.133 , pp. 1564-1571
    • Ferreira, M.A.1
  • 9
    • 0037098199 scopus 로고    scopus 로고
    • Quantifying heterogeneity in a metaanalysis
    • Higgins, J. P. &Thompson, S. G. Quantifying heterogeneity in a metaanalysis. Stat. Med. 21, 1539-1558 (2002)
    • (2002) Stat. Med , vol.21 , pp. 1539-1558
    • Higgins, J.P.1    Thompson, S.G.2
  • 10
    • 84866871814 scopus 로고    scopus 로고
    • Mapping cis-and trans-regulatory effects across multiple tissues in twins
    • Grundberg, E. et al. Mapping cis-and trans-regulatory effects across multiple tissues in twins. Nat. Genet. 44, 1084-1089 (2012)
    • (2012) Nat. Genet , vol.44 , pp. 1084-1089
    • Grundberg, E.1
  • 11
    • 84885018609 scopus 로고    scopus 로고
    • Systematic identification of trans eQTLs as putative drivers of known disease associations
    • Westra, H. J. et al. Systematic identification of trans eQTLs as putative drivers of known disease associations. Nat. Genet. 45, 1238-1243 (2013)
    • (2013) Nat. Genet , vol.45 , pp. 1238-1243
    • Westra, H.J.1
  • 12
    • 84929001104 scopus 로고    scopus 로고
    • The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
    • GTEx Consortium
    • GTEx Consortium. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science 348, 648-660 (2015)
    • (2015) Science , vol.348 , pp. 648-660
  • 13
    • 84875990952 scopus 로고    scopus 로고
    • A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines
    • Liang, L. et al. A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines. Genome Res. 23, 716-726 (2013)
    • (2013) Genome Res , vol.23 , pp. 716-726
    • Liang, L.1
  • 14
    • 84870713668 scopus 로고    scopus 로고
    • Lung eQTLs to help reveal the molecular underpinnings of asthma
    • Hao, K. et al. Lung eQTLs to help reveal the molecular underpinnings of asthma. PLoS Genet. 8, e1003029 (2012)
    • (2012) PLoS Genet , vol.8 , pp. e1003029
    • Hao, K.1
  • 15
    • 79960942399 scopus 로고    scopus 로고
    • Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations
    • Noguchi, E. et al. Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations. PLoS Genet. 7, e1002170 (2011)
    • (2011) PLoS Genet , vol.7 , pp. e1002170
    • Noguchi, E.1
  • 16
    • 84901056425 scopus 로고    scopus 로고
    • Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations
    • Ding, L. et al. Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations. Hum. Genomics 7, 16 (2013)
    • (2013) Hum. Genomics , vol.7 , pp. 16
    • Ding, L.1
  • 17
    • 74049129976 scopus 로고    scopus 로고
    • Variants of DENND1B associated with asthma in children
    • Sleiman, P. M. et al. Variants of DENND1B associated with asthma in children. N. Engl. J. Med. 362, 36-44 (2010)
    • (2010) N. Engl. J. Med , vol.362 , pp. 36-44
    • Sleiman, P.M.1
  • 18
    • 65549123032 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene
    • Himes, B. E. et al. Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene. Am. J. Hum. Genet. 84, 581-593 (2009)
    • (2009) Am. J. Hum. Genet , vol.84 , pp. 581-593
    • Himes, B.E.1
  • 19
    • 80052259316 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations
    • Torgerson, D. G. et al. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. Nat. Genet. 43, 887-892 (2011)
    • (2011) Nat. Genet , vol.43 , pp. 887-892
    • Torgerson, D.G.1
  • 20
    • 84891372721 scopus 로고    scopus 로고
    • A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations
    • Bonnelykke, K. et al. A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations. Nat. Genet. 46, 51-55 (2014)
    • (2014) Nat. Genet , vol.46 , pp. 51-55
    • Bonnelykke, K.1
  • 21
    • 80052721297 scopus 로고    scopus 로고
    • Identification of IL6R and chromosome 11q13.5 as risk loci for asthma
    • Ferreira, M. A. et al. Identification of IL6R and chromosome 11q13.5 as risk loci for asthma. Lancet 378, 1006-1014 (2011)
    • (2011) Lancet , vol.378 , pp. 1006-1014
    • Ferreira, M.A.1
  • 22
    • 77957113600 scopus 로고    scopus 로고
    • A large-scale, consortium-based genomewide association study of asthma
    • Moffatt, M. F. et al. A large-scale, consortium-based genomewide association study of asthma. N. Engl. J. Med. 363, 1211-1221 (2010)
    • (2010) N. Engl. J. Med , vol.363 , pp. 1211-1221
    • Moffatt, M.F.1
  • 23
    • 77956637896 scopus 로고    scopus 로고
    • Genetics and beyond: The transcriptome of human monocytes and disease susceptibility
    • Zeller, T. et al. Genetics and beyond: the transcriptome of human monocytes and disease susceptibility. PLoS One 5, e10693 (2010)
    • (2010) PLoS One , vol.5 , pp. e10693
    • Zeller, T.1
  • 24
    • 84923362619 scopus 로고    scopus 로고
    • Integrative analysis of 111 reference human epigenomes
    • Kundaje, A. et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015)
    • (2015) Nature , vol.518 , pp. 317-330
    • Kundaje, A.1
  • 25
    • 67651205715 scopus 로고    scopus 로고
    • Identifying relationships among genomic disease regions: Predicting genes at pathogenic SNP associations and rare deletions
    • Raychaudhuri, S. et al. Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. PLoS Genet. 5, e1000534 (2009)
    • (2009) PLoS Genet , vol.5 , pp. e1000534
    • Raychaudhuri, S.1
  • 26
    • 36549033689 scopus 로고    scopus 로고
    • The role of Bach2 in nucleic acid-triggered antiviral innate immune responses
    • Hong, S. W., Kim, S. &Lee, D. K. The role of Bach2 in nucleic acid-triggered antiviral innate immune responses. Biochem. Biophys. Res. Commun. 365, 426-432 (2008)
    • (2008) Biochem. Biophys. Res. Commun , vol.365 , pp. 426-432
    • Hong, S.W.1    Kim, S.2    Lee, D.K.3
  • 27
    • 58249088830 scopus 로고    scopus 로고
    • Beta-Arrestin1 interacts with the G-protein subunits B 1Y 2 and promotes B 1Y 2-dependent Akt signalling for NF-kappaB activation
    • Yang, M., He, R. L., Benovic, J. L. &Ye, R. D. Beta-Arrestin1 interacts with the G-protein subunits B 1Y 2 and promotes B 1Y 2-dependent Akt signalling for NF-kappaB activation. Biochem. J 417, 287-296 (2009)
    • (2009) Biochem. J , vol.417 , pp. 287-296
    • Yang, M.1    He, R.L.2    Benovic, J.L.3    Ye, R.D.4
  • 28
    • 80055008094 scopus 로고    scopus 로고
    • Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function
    • Soler Artigas, M. et al. Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. Nat. Genet. 43, 1082-1090 (2011)
    • (2011) Nat. Genet , vol.43 , pp. 1082-1090
    • Soler Artigas, M.1
  • 29
    • 79955574671 scopus 로고    scopus 로고
    • Transcriptional regulation by STAT6
    • Goenka, S. &Kaplan, M. H. Transcriptional regulation by STAT6. Immunol. Res. 50, 87-96 (2011)
    • (2011) Immunol. Res , vol.50 , pp. 87-96
    • Goenka, S.1    Kaplan, M.H.2
  • 30
    • 84905114043 scopus 로고    scopus 로고
    • Association of STAT6 variants with asthma risk: A systematic review and meta-analysis
    • Qian, X., Gao, Y., Ye, X. &Lu, M. Association of STAT6 variants with asthma risk: a systematic review and meta-analysis. Hum. Immunol. 75, 847-853 (2014)
    • (2014) Hum. Immunol , vol.75 , pp. 847-853
    • Qian, X.1    Gao, Y.2    Ye, X.3    Lu, M.4
  • 31
    • 84869748782 scopus 로고    scopus 로고
    • Ndfip1 negatively regulates RIG-I-dependent immune signaling by enhancing E3 ligase Smurf1-mediated MAVS degradation
    • Wang, Y., Tong, X. &Ye, X. Ndfip1 negatively regulates RIG-I-dependent immune signaling by enhancing E3 ligase Smurf1-mediated MAVS degradation. J. Immunol. 189, 5304-5313 (2012)
    • (2012) J. Immunol , vol.189 , pp. 5304-5313
    • Wang, Y.1    Tong, X.2    Ye, X.3
  • 32
    • 84929961711 scopus 로고    scopus 로고
    • Multifaceted role of the ubiquitin ligase Itch in immune regulation
    • Venuprasad, K., Zeng, M., Baughan, S. L. &Massoumi, R. Multifaceted role of the ubiquitin ligase Itch in immune regulation. Immunol. Cell Biol. 93, 452-460 (2015)
    • (2015) Immunol. Cell Biol , vol.93 , pp. 452-460
    • Venuprasad, K.1    Zeng, M.2    Baughan, S.L.3    Massoumi, R.4
  • 33
    • 84995792545 scopus 로고    scopus 로고
    • Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters
    • e19
    • Javierre, B. M. et al. Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters. Cell 167, 1369-1384. e19 (2016)
    • (2016) Cell , vol.167 , pp. 1369-1384
    • Javierre, B.M.1
  • 34
    • 79959334504 scopus 로고    scopus 로고
    • Pathophysiology of allergic inflammation
    • Barnes, P. J. Pathophysiology of allergic inflammation. Immunol. Rev. 242, 31-50 (2011)
    • (2011) Immunol. Rev , vol.242 , pp. 31-50
    • Barnes, P.J.1
  • 35
    • 84938987369 scopus 로고    scopus 로고
    • Long-range modulation of PAG1 expression by 8q21 allergy risk variants
    • Vicente, C. T. et al. Long-range modulation of PAG1 expression by 8q21 allergy risk variants. Am. J. Hum. Genet. 97, 329-336 (2015)
    • (2015) Am. J. Hum. Genet , vol.97 , pp. 329-336
    • Vicente, C.T.1
  • 36
    • 84855363144 scopus 로고    scopus 로고
    • Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene
    • Davison, L. J. et al. Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene. Hum. Mol. Genet 21, 322-333 (2012)
    • (2012) Hum. Mol. Genet , vol.21 , pp. 322-333
    • Davison, L.J.1
  • 37
    • 84941630395 scopus 로고    scopus 로고
    • CPAG: Software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
    • Wang, L. et al. CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation. Genome Biol. 16, 190 (2015)
    • (2015) Genome Biol , vol.16 , pp. 190
    • Wang, L.1
  • 38
    • 0345491504 scopus 로고    scopus 로고
    • Asthma as a paradigm for autoimmune disease
    • Rottem, M. &Shoenfeld, Y. Asthma as a paradigm for autoimmune disease. Int. Arch. Allergy Immunol. 132, 210-214 (2003)
    • (2003) Int. Arch. Allergy Immunol , vol.132 , pp. 210-214
    • Rottem, M.1    Shoenfeld, Y.2
  • 39
    • 84869116213 scopus 로고    scopus 로고
    • Genome-wide association studies of asthma indicate opposite immunopathogenesis direction from autoimmune diseases
    • Li, X. et al. Genome-wide association studies of asthma indicate opposite immunopathogenesis direction from autoimmune diseases. J. Allergy Clin. Immunol. 130, 861-868.e7 (2012)
    • (2012) J. Allergy Clin. Immunol , vol.130 , pp. 861-868e7
    • Li, X.1
  • 40
    • 84947762546 scopus 로고    scopus 로고
    • Tissue-specific enrichment of lymphoma risk loci in regulatory elements
    • Hayes, J. E. et al. Tissue-specific enrichment of lymphoma risk loci in regulatory elements. PLoS One 10, e0139360 (2015)
    • (2015) PLoS One , vol.10 , pp. e0139360
    • Hayes, J.E.1
  • 41
    • 84928819497 scopus 로고    scopus 로고
    • An epigenome-wide association study of total serum immunoglobulin e concentration
    • Liang, L. et al. An epigenome-wide association study of total serum immunoglobulin E concentration. Nature 520, 670-674 (2015)
    • (2015) Nature , vol.520 , pp. 670-674
    • Liang, L.1
  • 42
    • 84860679595 scopus 로고    scopus 로고
    • Asthma phenotypes: The evolution from clinical to molecular approaches
    • Wenzel, S. E. Asthma phenotypes: the evolution from clinical to molecular approaches. Nat. Med. 18, 716-725 (2012)
    • (2012) Nat. Med , vol.18 , pp. 716-725
    • Wenzel, S.E.1
  • 44
    • 84862832570 scopus 로고    scopus 로고
    • Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits
    • Yang, J. et al. Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits. Nat. Genet. 44, 369-375 (2012)
    • (2012) Nat. Genet , vol.44 , pp. 369-375
    • Yang, J.1
  • 46
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R. &Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010)
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 47
    • 79957839983 scopus 로고    scopus 로고
    • VIZ-GRAIL: Visualizing functional connections across disease loci
    • Raychaudhuri, S. VIZ-GRAIL: visualizing functional connections across disease loci. Bioinformatics 27, 1589-1590 (2011)
    • (2011) Bioinformatics , vol.27 , pp. 1589-1590
    • Raychaudhuri, S.1
  • 48
    • 79955841697 scopus 로고    scopus 로고
    • Evaluating the heritability explained by known susceptibility variants: A survey of ten complex diseases
    • So, H. C., Gui, A. H., Cherny, S. S. &Sham, P. C. Evaluating the heritability explained by known susceptibility variants: a survey of ten complex diseases. Genet. Epidemiol. 35, 310-317 (2011)
    • (2011) Genet. Epidemiol , vol.35 , pp. 310-317
    • So, H.C.1    Gui, A.H.2    Cherny, S.S.3    Sham, P.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.