Combining network analysis with epidemiological data to inform risk-based surveillance: Application to hepatitis E virus (HEV) in pigs

Preventive Veterinary Medicine

Volumn 149, Issue , 2018, Pages 125-131

  Salines, Morgane ^a,b   Andraud, Mathieu ^a,b   Rose, Nicolas ^a,b  

^a FRENCH AGENCY FOR FOOD   (France)

^b Univ Bretagne Loire   (France)

Author keywords

Animal movement network; Hepatitis E virus; Pig; Risk based surveillance; Seroprevalence

Indexed keywords

AGRICULTURAL LAND; ARTICLE; BIOGEOGRAPHY; DISEASE SURVEILLANCE; EPIDEMIOLOGICAL DATA; EVALUATION STUDY; EXPOSURE; FRANCE; HEPATITIS E; HEPATITIS E VIRUS; INFECTION RISK; NONHUMAN; PAIR NETWORK ANALYSIS; PIG; PRIORITY JOURNAL; RISK ASSESSMENT; SEROEPIDEMIOLOGY; SEROPREVALENCE; STATISTICAL ANALYSIS; STATISTICAL MODEL; ANIMAL; ANIMAL HUSBANDRY; EPIDEMIOLOGICAL MONITORING; PHYSIOLOGY; PREVALENCE; PROCEDURES; SWINE DISEASE; TRAFFIC AND TRANSPORT; VETERINARY; VIROLOGY;

ANIMAL HUSBANDRY; ANIMALS; EPIDEMIOLOGICAL MONITORING; FRANCE; HEPATITIS E; HEPATITIS E VIRUS; PREVALENCE; RISK ASSESSMENT; SEROEPIDEMIOLOGIC STUDIES; SWINE; SWINE DISEASES; TRANSPORTATION;

EID: 85035782552     PISSN: 01675877     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.prevetmed.2017.11.015     Document Type: Article

References (49)

1. Adlhoch, C., Avellon, A., Baylis, S.A., Ciccaglione, A.R., Couturier, E., de Sousa, R., Epstein, J., Ethelberg, S., Faber, M., Feher, A., Ijaz, S., Lange, H., Mandakova, Z., Mellou, K., Mozalevskis, A., Rimhanen-Finne, R., Rizzi, V., Said, B., Sundqvist, L., Thornton, L., Tosti, M.E., van Pelt, W., Aspinall, E., Domanovic, D., Severi, E., Takkinen, J., Dalton, H.R., Hepatitis E virus: assessment of the epidemiological situation in humans in Europe, 2014/15. J. Clin. Virol.: Off. Publ. Pan Am. Soc. Clin. Virol. 82 (2016), 9–16.
2. Beaunee, G., Vergu, E., Ezanno, P., Modelling of paratuberculosis spread between dairy cattle farms at a regional scale. Vet. Res., 46, 2015, 111.
3. Bigras-Poulin, M., Thompson, R.A., Chriel, M., Mortensen, S., Greiner, M., Network analysis of Danish cattle industry trade patterns as an evaluation of risk potential for disease spread. Prev. Vet. Med. 76 (2006), 11–39.
4. Bigras-Poulin, M., Barfod, K., Mortensen, S., Greiner, M., Relationship of trade patterns of the Danish swine industry animal movements network to potential disease spread. Prev. Vet. Med. 80 (2007), 143–165.
5. Buttner, K., Krieter, J., Traulsen, A., Traulsen, I., Static network analysis of a pork supply chain in Northern Germany-characterisation of the potential spread of infectious diseases via animal movements. Prev. Vet. Med. 110 (2013), 418–428.
6. Buttner, K., Krieter, J., Traulsen, I., Characterization of contact structures for the spread of infectious diseases in a pork supply chain in northern Germany by dynamic network analysis of yearly and monthly networks. Transbound. Emerg. Dis. 62 (2015), 188–199.
7. Colson, P., Borentain, P., Queyriaux, B., Kaba, M., Moal, V., Gallian, P., Heyries, L., Raoult, D., Gerolami, R., Pig liver sausage as a source of hepatitis E virus transmission to humans. J. Infect. Dis. 202 (2010), 825–834.
8. Dalton, H.R., Bendall, R., Ijaz, S., Banks, M., Hepatitis E: an emerging infection in developed countries. Lancet Infect. Dis. 8 (2008), 698–709.
9. Dorjee, S., Revie, C.W., Poljak, Z., McNab, W.B., Sanchez, J., Network analysis of swine shipments in Ontario, Canada, to support disease spread modelling and risk-based disease management. Prev. Vet. Med. 112 (2013), 118–127.
10. EFSA, B.P., Ricci, A., Allende, A., Bolton, D., Chemaly, M., Davies, R., Fernandez Escamez, P.S., Herman, L., Koutsoumanis, K., Lindqvist, R., Nørrung, B., Robertson, L., Ru, G., Sanaa, M., Simmons, M., Skandamis, P., Snary, E., Speybroeck, N., Ter Kuile, B., Threlfall, J., Wahlström, H., Di Bartolo, I., Johne, R., Pavio, N., Rutjes, S., van der Poel, W., Vasickova, P., Hempen, M., Messens, W., Rizzi, V., Latronico, G., Girones, R., Public health risks associated with hepatitis E virus (HEV) as a food-borne pathogen. EFSA J., 15, 2017, e04886-n/a.
11. Feurer, C., Le Roux, A., Rossel, R., Barnaud, E., Dumarest, M., Garry, P., Pavio, N., High load of hepatitis E viral RNA in pork livers but absence in pork muscle at French slaughterhouses. Int. J. Food Microbiol., 2017.
12. Frössling, J., Ohlson, A., Bjorkman, C., Hakansson, N., Noremark, M., Application of network analysis parameters in risk-based surveillance – examples based on cattle trade data and bovine infections in Sweden. Prev. Vet. Med. 105 (2012), 202–208.
13. Frössling, J., Nusinovici, S., Noremark, M., Widgren, S., Lindberg, A., A novel method to identify herds with an increased probability of disease introduction due to animal trade. Prev. Vet. Med. 117 (2014), 367–374.
14. Green, D.M., Kiss, I.Z., Mitchell, A.P., Kao, R.R., Estimates for local and movement-based transmission of bovine tuberculosis in British cattle. Proc. R. Soc. B: Biol. Sci. 275 (2008), 1001–1005.
15. Guinat, C., Relun, A., Wall, B., Morris, A., Dixon, L., Pfeiffer, D.U., Exploring pig trade patterns to inform the design of risk-based disease surveillance and control strategies. Sci. Rep., 6, 2016, 28429.
16. Ihaka, R., Gentleman, Robert, R: a language for data analysis and graphics. J. Comput. Gr. Stat. 5 (1996), 299–314.
17. Keeling, M., The implications of network structure for epidemic dynamics. Theor. Popul. Biol. 67 (2005), 1–8.
18. Lee, K., Polson, D., Lowe, E., Main, R., Holtkamp, D., Martinez-Lopez, B., Unraveling the contact patterns and network structure of pig shipments in the United States and its association with porcine reproductive and respiratory syndrome virus (PRRSV) outbreaks. Prev. Vet. Med. 138 (2017), 113–123.
19. Lindstrom, T., Lewerin, S.S., Wennergren, U., Influence on disease spread dynamics of herd characteristics in a structured livestock industry. Journal of the Royal Society. Interface 9 (2012), 1287–1294.
20. Lloyd-Smith, J.O., Schreiber, S.J., Kopp, P.E., Getz, W.M., Superspreading and the effect of individual variation on disease emergence. Nature 438 (2005), 355–359.
21. Martínez-López, B., Perez, A.M., Sánchez-Vizcaíno, J.M., Combined application of social network and cluster detection analyses for temporal-spatial characterization of animal movements in Salamanca, Spain. Prev. Vet. Med. 91 (2009), 29–38.
22. Martin, V., Zhou, X., Marshall, E., Jia, B., Fusheng, G., FrancoDixon, M.A., DeHaan, N., Pfeiffer, D.U., Soares Magalhães, R.J., Gilbert, M., Risk-based surveillance for avian influenza control along poultry market chains in South China: the value of social network analysis. Prev. Vet. Med. 102 (2011), 196–205.
23. Moal, V., Gerolami, R., Colson, P., First human case of co-infection with two different subtypes of hepatitis E virus. Intervirology 55 (2012), 484–487.
24. Motte, A., Roquelaure, B., Galambrun, C., Bernard, F., Zandotti, C., Colson, P., Hepatitis E in three immunocompromized children in southeastern France. J. Clin. Virol.: Off. Publ. Pan Am. Soc. Clin.Virol. 53 (2012), 162–166.
25. Nöremark, M., Håkansson, N., Lewerin, S.S., Lindberg, A., Jonsson, A., Network analysis of cattle and pig movements in Sweden: measures relevant for disease control and risk based surveillance. Prev. Vet. Med. 99 (2011), 78–90.
26. Nantel-Fortier, N., Letellier, A., Lachapelle, V., Fravalo, P., L'Homme, Y., Brassard, J., Detection and phylogenetic analysis of the hepatitis e virus in a canadian swine production network. Food Environ. Virol. 8:4 (2016), 296–304.
27. Natale, F., Giovannini, A., Savini, L., Palma, D., Possenti, L., Fiore, G., Calistri, P., Network analysis of Italian cattle trade patterns and evaluation of risks for potential disease spread. Prev. Vet. Med. 92 (2009), 341–350.
28. Nicolas, G., Durand, B., Duboz, R., Rakotondravao, R., Chevalier, V., Description and analysis of the cattle trade network in the Madagascar highlands: potential role in the diffusion of rift valley fever virus. Acta Trop. 126 (2013), 19–27.
29. Ortiz-Pelaez, A., Pfeiffer, D.U., Soares-Magalhães, R.J., Guitian, F.J., Use of social network analysis to characterize the pattern of animal movements in the initial phases of the 2001 foot and mouth disease (FMD) epidemic in the UK. Prev. Vet. Med. 76 (2006), 40–55.
30. Pavio, N., Meng, X.J., Renou, C., Zoonotic hepatitis E: animal reservoirs and emerging risks. Vet. Res., 41, 2010, 46.
31. Porphyre, T., McKenzie, J., Stevenson, M.A., Contact patterns as a risk factor for bovine tuberculosis infection in a free-living adult brushtail possum Trichosurus vulpecula population. Prev. Vet. Med. 100 (2011), 221–230.
32. Rautureau, S., Dufour, B., Durand, B., Structural vulnerability of the French swine industry trade network to the spread of infectious diseases. Anim.: Int. J. Anim. Biosci. 6 (2012), 1152–1162.
33. Reist, M., Jemmi, T., Stark, K.D., Policy-driven development of cost-effective, risk-based surveillance strategies. Prev. Vet. Med. 105 (2012), 176–184.
34. Relun, A., Grosbois, V., Sánchez-Vizcaíno, J.M., Alexandrov, T., Feliziani, F., Waret-Szkuta, A., Molia, S., Etter, E.M.C., Martínez-López, B., Spatial and functional organization of pig trade in different european production systems: implications for disease prevention and control. Front. Vet. Sci., 3, 2016.
35. Ribbens, S., Dewulf, J., Koenen, F., Mintiens, K., de Kruif, A., Maes, D., Type and frequency of contacts between Belgian pig herds. Prev. Vet. Med. 88 (2009), 57–66.
36. Ribeiro-Lima, J., Enns, E.A., Thompson, B., Craft, M.E., Wells, S.J., From network analysis to risk analysis–An approach to risk-based surveillance for bovine tuberculosis in Minnesota, US. Prev. Vet. Med. 118 (2015), 328–340.
37. Rogan, W.J., Gladen, B., Estimating prevalence from the results of a screening test. Am. J. Epidemiol. 107 (1978), 71–76.
38. Rose, N., Boutrouille, A., Fablet, C., Madec, F., Eloit, M., Pavio, N., The use of Bayesian methods for evaluating the performance of a virus-like particles-based ELISA for serology of hepatitis E virus infection in swine. J. Virol. Methods 163 (2010), 329–335.
39. Rose, N., Lunazzi, A., Dorenlor, V., Merbah, T., Eono, F., Eloit, M., Madec, F., Pavio, N., High prevalence of Hepatitis E virus in French domestic pigs. Comp. Immunol. Microbiol. Infect. Dis. 34 (2011), 419–427.
40. SAS, SAS, 9.4. Language Reference: Concepts. 3rd ed., 2014, SAS Institute Inc., Cary, NC.
41. Salines, M., Andraud, M., Rose, N., From the epidemiology of hepatitis E virus (HEV) within the swine reservoir to public health risk mitigation strategies: a comprehensive review. Vet. Res., 48, 2017, 31.
42. Salines, M., Andraud, M., Rose, N., Pig movements in France: designing network models fitting the transmission route of pathogens. PLoS One, 12, 2017, e0185858.
43. Schärrer, S., Widgren, S., Schwermer, H., Lindberg, A., Vidondo, B., Zinsstag, J., Reist, M., Evaluation of farm-level parameters derived from animal movements for use in risk-based surveillance programmes of cattle in Switzerland. Vet. Res., 11, 2015, 149.
44. Sintayehu, D.W., Prins, H.H., Heitkonig, I.M., de Boer, W.F., Disease transmission in animal transfer networks. Prev. Vet. Med. 137 (2017), 36–42.
45. Stärk, K.D.C., Regula, G., Hernandez, J., Knopf, L., Fuchs, K., Morris, R.S., Davies, P., Concepts for risk-based surveillance in the field of veterinary medicine and veterinary public health: review of current approaches. BMC Health Serv. Res., 6, 2006, 20.
46. Thakur, K.K., Sanchez, J., Hurnik, D., Poljak, Z., Opps, S., Revie, C.W., Development of a network based model to simulate the between-farm transmission of the porcine reproductive and respiratory syndrome virus. Vet. Microbiol. 180 (2015), 212–222.
47. Thakur, K.K., Revie, C.W., Hurnik, D., Poljak, Z., Sanchez, J., Analysis of swine movement in four canadian regions: network structure and implications for disease spread. Transbound. Emerg. Dis. 63 (2016), e14–26.
48. Walachowski, S., Dorenlor, V., Lefevre, J., Lunazzi, A., Eono, F., Merbah, T., Eveno, E., Pavio, N., Rose, N., Risk factors associated with the presence of hepatitis E virus in livers and seroprevalence in slaughter-age pigs: a retrospective study of 90 swine farms in France. Epidemiol. Infect. 142 (2014), 1934–1944.
49. Wasserman, S., Faust, K., Social Network Analysis: Methods and Applications. 1994.