메뉴 건너뛰기




Volumn 551, Issue 7680, 2017, Pages 340-345

Erratum: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity (Nature (2017) 551 (340-345) DOI: 10.1038/nature24302);Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity

(23)  Shalapour, Shabnam a   Lin, Xue Jia a,b   Bastian, Ingmar N a   Brain, John c   Burt, Alastair D d   Aksenov, Alexander A e   Vrbanac, Alison F f   Li, Weihua a   Perkins, Andres a   Matsutani, Takaji g   Zhong, Zhenyu a   Dhar, Debanjan a   Navas Molina, Jose A f   Xu, Jun h   Loomba, Rohit h   Downes, Michael i   Yu, Ruth T i   Evans, Ronald M i   Dorrestein, Pieter C e,j   Knight, Rob f,j   more..


Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN A; INTERLEUKIN 10; PROGRAMMED DEATH 1 LIGAND 1; T LYMPHOCYTE RECEPTOR; TUMOR ANTIGEN; CD8 ANTIGEN; CD8 ANTIGEN, ALPHA CHAIN;

EID: 85034443159     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature25028     Document Type: Erratum
Times cited : (384)

References (76)
  • 1
    • 80054875641 scopus 로고    scopus 로고
    • Novel cancer immunotherapy agents with survival benefit: Recent successes and next steps
    • Sharma, P., Wagner, K., Wolchok, J. D. & Allison, J. P. Novel cancer immunotherapy agents with survival benefit: recent successes and next steps. Nat. Rev. Cancer 11, 805-812 (2011).
    • (2011) Nat. Rev. Cancer , vol.11 , pp. 805-812
    • Sharma, P.1    Wagner, K.2    Wolchok, J.D.3    Allison, J.P.4
  • 2
    • 84928759208 scopus 로고    scopus 로고
    • Adoptive cell transfer as personalized immunotherapy for human cancer
    • Rosenberg, S. A. & Restifo, N. P. Adoptive cell transfer as personalized immunotherapy for human cancer. Science 348, 62-68 (2015).
    • (2015) Science , vol.348 , pp. 62-68
    • Rosenberg, S.A.1    Restifo, N.P.2
  • 3
    • 84894107349 scopus 로고    scopus 로고
    • New insights into cancer immunoediting and its three component phases - Elimination, equilibrium and escape
    • Mittal, D., Gubin, M. M., Schreiber, R. D. & Smyth, M. J. New insights into cancer immunoediting and its three component phases - elimination, equilibrium and escape. Curr. Opin. Immunol. 27, 16-25 (2014).
    • (2014) Curr. Opin. Immunol. , vol.27 , pp. 16-25
    • Mittal, D.1    Gubin, M.M.2    Schreiber, R.D.3    Smyth, M.J.4
  • 4
    • 84905500282 scopus 로고    scopus 로고
    • Does the immune system naturally protect against cancer?
    • Corthay, A. Does the immune system naturally protect against cancer? Front. Immunol. 5, 197 (2014).
    • (2014) Front. Immunol. , vol.5 , pp. 197
    • Corthay, A.1
  • 5
    • 84944392238 scopus 로고    scopus 로고
    • Hepatocellular carcinoma from epidemiology to prevention: Translating knowledge into practice
    • Singal, A. G. & El-Serag, H. B. Hepatocellular carcinoma from epidemiology to prevention: translating knowledge into practice. Clin. Gastroenterol. Hepatol. 13, 2140-2151 (2015).
    • (2015) Clin. Gastroenterol. Hepatol. , vol.13 , pp. 2140-2151
    • Singal, A.G.1    El-Serag, H.B.2
  • 6
    • 79751492851 scopus 로고    scopus 로고
    • NF-κ B in the liver - Linking injury, fibrosis and hepatocellular carcinoma
    • Luedde, T. & Schwabe, R. F. NF-κ B in the liver - linking injury, fibrosis and hepatocellular carcinoma. Nat. Rev. Gastroenterol. Hepatol. 8, 108-118 (2011).
    • (2011) Nat. Rev. Gastroenterol. Hepatol. , vol.8 , pp. 108-118
    • Luedde, T.1    Schwabe, R.F.2
  • 7
    • 84907976095 scopus 로고    scopus 로고
    • Metabolic activation of intrahepatic CD8+ T cells and NKT cells causes nonalcoholic steatohepatitis and liver cancer via cross-talk with hepatocytes
    • Wolf, M. J. et al. Metabolic activation of intrahepatic CD8+ T cells and NKT cells causes nonalcoholic steatohepatitis and liver cancer via cross-talk with hepatocytes. Cancer Cell 26, 549-564 (2014).
    • (2014) Cancer Cell , vol.26 , pp. 549-564
    • Wolf, M.J.1
  • 9
    • 84947461497 scopus 로고    scopus 로고
    • Immune dysfunction in acute alcoholic hepatitis
    • Dhanda, A. D. & Collins, P. L. Immune dysfunction in acute alcoholic hepatitis. World J. Gastroenterol. 21, 11904-11913 (2015).
    • (2015) World J. Gastroenterol. , vol.21 , pp. 11904-11913
    • Dhanda, A.D.1    Collins, P.L.2
  • 10
    • 0029887586 scopus 로고    scopus 로고
    • Interferon gamma decreases hepatic stellate cell activation and extracellular matrix deposition in rat liver fibrosis
    • Baroni, G. S. et al. Interferon gamma decreases hepatic stellate cell activation and extracellular matrix deposition in rat liver fibrosis. Hepatology 23, 1189-1199 (1996).
    • (1996) Hepatology , vol.23 , pp. 1189-1199
    • Baroni, G.S.1
  • 12
    • 84945936980 scopus 로고    scopus 로고
    • The expanding family of regulatory B cells
    • Mauri, C. & Menon, M. The expanding family of regulatory B cells. Int. Immunol. 27, 479-486 (2015).
    • (2015) Int. Immunol. , vol.27 , pp. 479-486
    • Mauri, C.1    Menon, M.2
  • 13
    • 84898771950 scopus 로고    scopus 로고
    • Serum immunoglobulin levels predict fibrosis in patients with non-alcoholic fatty liver disease
    • McPherson, S., Henderson, E., Burt, A. D., Day, C. P. & Anstee, Q. M. Serum immunoglobulin levels predict fibrosis in patients with non-alcoholic fatty liver disease. J. Hepatol. 60, 1055-1062 (2014).
    • (2014) J. Hepatol. , vol.60 , pp. 1055-1062
    • McPherson, S.1    Henderson, E.2    Burt, A.D.3    Day, C.P.4    Anstee, Q.M.5
  • 14
    • 84929085260 scopus 로고    scopus 로고
    • Immunosuppressive plasma cells impede T-cell-dependent immunogenic chemotherapy
    • Shalapour, S. et al. Immunosuppressive plasma cells impede T-cell-dependent immunogenic chemotherapy. Nature 521, 94-98 (2015).
    • (2015) Nature , vol.521 , pp. 94-98
    • Shalapour, S.1
  • 15
    • 84908665169 scopus 로고    scopus 로고
    • ER stress cooperates with hypernutrition to trigger TNF-dependent spontaneous HCC development
    • Nakagawa, H. et al. ER stress cooperates with hypernutrition to trigger TNF-dependent spontaneous HCC development. Cancer Cell 26, 331-343 (2014).
    • (2014) Cancer Cell , vol.26 , pp. 331-343
    • Nakagawa, H.1
  • 16
    • 84939216194 scopus 로고    scopus 로고
    • Hybrid periportal hepatocytes regenerate the injured liver without giving rise to cancer
    • Font-Burgada, J. et al. Hybrid periportal hepatocytes regenerate the injured liver without giving rise to cancer. Cell 162, 766-779 (2015).
    • (2015) Cell , vol.162 , pp. 766-779
    • Font-Burgada, J.1
  • 17
    • 74549167737 scopus 로고    scopus 로고
    • Dietary and genetic obesity promote liver inflammation and tumorigenesis by enhancing IL-6 and TNF expression
    • Park, E. J. et al. Dietary and genetic obesity promote liver inflammation and tumorigenesis by enhancing IL-6 and TNF expression. Cell 140, 197-208 (2010).
    • (2010) Cell , vol.140 , pp. 197-208
    • Park, E.J.1
  • 18
    • 85002926045 scopus 로고    scopus 로고
    • IL-33 regulates the IgA-microbiota axis to restrain IL-1a-dependent colitis and tumorigenesis
    • Malik, A. et al. IL-33 regulates the IgA-microbiota axis to restrain IL-1a-dependent colitis and tumorigenesis. J. Clin. Invest. 126, 4469-4481 (2016).
    • (2016) J. Clin. Invest. , vol.126 , pp. 4469-4481
    • Malik, A.1
  • 19
    • 44349195660 scopus 로고    scopus 로고
    • The regulation of IgA class switching
    • Cerutti, A. The regulation of IgA class switching. Nat. Rev. Immunol. 8, 421-434 (2008).
    • (2008) Nat. Rev. Immunol. , vol.8 , pp. 421-434
    • Cerutti, A.1
  • 20
    • 84929129284 scopus 로고    scopus 로고
    • Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets
    • Schulze, K. et al. Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets. Nat. Genet. 47, 505-511 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 505-511
    • Schulze, K.1
  • 21
    • 84885671431 scopus 로고    scopus 로고
    • Identification of liver cancer progenitors whose malignant progression depends on autocrine IL-6 signaling
    • He, G. et al. Identification of liver cancer progenitors whose malignant progression depends on autocrine IL-6 signaling. Cell 155, 384-396 (2013).
    • (2013) Cell , vol.155 , pp. 384-396
    • He, G.1
  • 22
    • 84883713293 scopus 로고    scopus 로고
    • Secretory IgA: Designed for anti-microbial defense
    • Brandtzaeg, P. Secretory IgA: designed for anti-microbial defense. Front. Immunol. 4, 222 (2013).
    • (2013) Front. Immunol. , vol.4 , pp. 222
    • Brandtzaeg, P.1
  • 23
    • 84859812538 scopus 로고    scopus 로고
    • Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4
    • Dapito, D. H. et al. Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. Cancer Cell 21, 504-516 (2012).
    • (2012) Cancer Cell , vol.21 , pp. 504-516
    • Dapito, D.H.1
  • 24
    • 35948958955 scopus 로고    scopus 로고
    • TLR4 enhances TGF-β signaling and hepatic fibrosis
    • Seki, E. et al. TLR4 enhances TGF-β signaling and hepatic fibrosis. Nat. Med. 13, 1324-1332 (2007).
    • (2007) Nat. Med. , vol.13 , pp. 1324-1332
    • Seki, E.1
  • 25
    • 0037390660 scopus 로고    scopus 로고
    • B cell receptor-independent stimuli trigger immunoglobulin (Ig) class switch recombination and production of IgG autoantibodies by anergic self-reactive B cells
    • Phan, T. G. et al. B cell receptor-independent stimuli trigger immunoglobulin (Ig) class switch recombination and production of IgG autoantibodies by anergic self-reactive B cells. J. Exp. Med. 197, 845-860 (2003).
    • (2003) J. Exp. Med. , vol.197 , pp. 845-860
    • Phan, T.G.1
  • 26
    • 84961683188 scopus 로고    scopus 로고
    • NAFLD causes selective CD4+ T lymphocyte loss and promotes hepatocarcinogenesis
    • Ma, C. et al. NAFLD causes selective CD4+ T lymphocyte loss and promotes hepatocarcinogenesis. Nature 531, 253-257 (2016).
    • (2016) Nature , vol.531 , pp. 253-257
    • Ma, C.1
  • 27
    • 77952557954 scopus 로고    scopus 로고
    • PD-1 regulates germinal center B cell survival and the formation and affinity of long-lived plasma cells
    • Good-Jacobson, K. L. et al. PD-1 regulates germinal center B cell survival and the formation and affinity of long-lived plasma cells. Nat. Immunol. 11, 535-542 (2010).
    • (2010) Nat. Immunol. , vol.11 , pp. 535-542
    • Good-Jacobson, K.L.1
  • 28
    • 77951258833 scopus 로고    scopus 로고
    • Features of responding T cells in cancer and chronic infection
    • Kim, P. S. & Ahmed, R. Features of responding T cells in cancer and chronic infection. Curr. Opin. Immunol. 22, 223-230 (2010).
    • (2010) Curr. Opin. Immunol. , vol.22 , pp. 223-230
    • Kim, P.S.1    Ahmed, R.2
  • 29
    • 84941660341 scopus 로고    scopus 로고
    • Immunity, inflammation, and cancer: An eternal fight between good and evil
    • Shalapour, S. & Karin, M. Immunity, inflammation, and cancer: an eternal fight between good and evil. J. Clin. Invest. 125, 3347-3355 (2015).
    • (2015) J. Clin. Invest. , vol.125 , pp. 3347-3355
    • Shalapour, S.1    Karin, M.2
  • 30
    • 85016505041 scopus 로고    scopus 로고
    • De-risking immunotherapy: Report of a consensus workshop of the cancer immunotherapy consortium of the cancer research institute
    • Mellman, I. et al. De-risking immunotherapy: report of a consensus workshop of the Cancer Immunotherapy Consortium of the Cancer Research Institute. Cancer Immunol. Res. 4, 279-288 (2016).
    • (2016) Cancer Immunol. Res. , vol.4 , pp. 279-288
    • Mellman, I.1
  • 31
    • 81855169964 scopus 로고    scopus 로고
    • Senescence surveillance of pre-malignant hepatocytes limits liver cancer development
    • Kang, T. W. et al. Senescence surveillance of pre-malignant hepatocytes limits liver cancer development. Nature 479, 547-551 (2011).
    • (2011) Nature , vol.479 , pp. 547-551
    • Kang, T.W.1
  • 32
    • 85018660134 scopus 로고    scopus 로고
    • Nivolumab in patients with advanced hepatocellular carcinoma (CheckMate 040): An open-label, non-comparative, phase 1/2 dose escalation and expansion trial
    • El-Khoueiry, A. B. et al. Nivolumab in patients with advanced hepatocellular carcinoma (CheckMate 040): an open-label, non-comparative, phase 1/2 dose escalation and expansion trial. Lancet 389, 2492-2502 (2017).
    • (2017) Lancet , vol.389 , pp. 2492-2502
    • El-Khoueiry, A.B.1
  • 33
    • 70149098555 scopus 로고    scopus 로고
    • Nonredundant roles for B cell-derived IL-10 in immune counter-regulation
    • Madan, R. et al. Nonredundant roles for B cell-derived IL-10 in immune counter-regulation. J. Immunol. 183, 2312-2320 (2009).
    • (2009) J. Immunol. , vol.183 , pp. 2312-2320
    • Madan, R.1
  • 34
    • 0025852445 scopus 로고
    • A B cell-deficient mouse by targeted disruption of the membrane exon of the immunoglobulin μ chain gene
    • Kitamura, D., Roes, J., Kühn, R. & Rajewsky, K. A B cell-deficient mouse by targeted disruption of the membrane exon of the immunoglobulin μ chain gene. Nature 350, 423-426 (1991).
    • (1991) Nature , vol.350 , pp. 423-426
    • Kitamura, D.1    Roes, J.2    Kühn, R.3    Rajewsky, K.4
  • 35
    • 0033104726 scopus 로고    scopus 로고
    • Targeted deletion of the IgA constant region in mice leads to IgA deficiency with alterations in expression of other Ig isotypes
    • Harriman, G. R. et al. Targeted deletion of the IgA constant region in mice leads to IgA deficiency with alterations in expression of other Ig isotypes. J. Immunol. 162, 2521-2529 (1999).
    • (1999) J. Immunol. , vol.162 , pp. 2521-2529
    • Harriman, G.R.1
  • 36
    • 0026694021 scopus 로고
    • Less mortality but more relapses in experimental allergic encephalomyelitis in CD8-/-mice
    • Koh, D. R. et al. Less mortality but more relapses in experimental allergic encephalomyelitis in CD8-/-mice. Science 256, 1210-1213 (1992).
    • (1992) Science , vol.256 , pp. 1210-1213
    • Koh, D.R.1
  • 37
    • 0026585781 scopus 로고
    • RAG-1-deficient mice have no mature B and T lymphocytes
    • Mombaerts, P. et al. RAG-1-deficient mice have no mature B and T lymphocytes. Cell 68, 869-877 (1992).
    • (1992) Cell , vol.68 , pp. 869-877
    • Mombaerts, P.1
  • 38
    • 0027305425 scopus 로고
    • Immunoglobulin gene rearrangement in B cell deficient mice generated by targeted deletion of the JH locus
    • Chen, J. et al. Immunoglobulin gene rearrangement in B cell deficient mice generated by targeted deletion of the JH locus. Int. Immunol. 5, 647-656 (1993).
    • (1993) Int. Immunol. , vol.5 , pp. 647-656
    • Chen, J.1
  • 39
    • 0036918641 scopus 로고    scopus 로고
    • The preferential ability of B lymphocytes to act as diabetogenic APC in NOD mice depends on expression of self-antigen-specific immunoglobulin receptors
    • Silveira, P. A. et al. The preferential ability of B lymphocytes to act as diabetogenic APC in NOD mice depends on expression of self-antigen-specific immunoglobulin receptors. Eur. J. Immunol. 32, 3657-3666 (2002).
    • (2002) Eur. J. Immunol. , vol.32 , pp. 3657-3666
    • Silveira, P.A.1
  • 40
    • 0033571756 scopus 로고    scopus 로고
    • Generation of polymeric immunoglobulin receptor-deficient mouse with marked reduction of secretory IgA
    • Shimada, S. et al. Generation of polymeric immunoglobulin receptor-deficient mouse with marked reduction of secretory IgA. J. Immunol. 163, 5367-5373 (1999).
    • (1999) J. Immunol. , vol.163 , pp. 5367-5373
    • Shimada, S.1
  • 41
    • 16844373628 scopus 로고    scopus 로고
    • Effect of conditional knockout of the type II TGF-beta receptor gene in mammary epithelia on mammary gland development and polyomavirus middle T antigen induced tumor formation and metastasis
    • Forrester, E. et al. Effect of conditional knockout of the type II TGF-beta receptor gene in mammary epithelia on mammary gland development and polyomavirus middle T antigen induced tumor formation and metastasis. Cancer Res. 65, 2296-2302 (2005).
    • (2005) Cancer Res. , vol.65 , pp. 2296-2302
    • Forrester, E.1
  • 42
    • 17044413339 scopus 로고    scopus 로고
    • Altered migration, recruitment, and somatic hypermutation in the early response of marginal zone B cells to T cell-dependent antigen
    • Phan, T. G., Gardam, S., Basten, A. & Brink, R. Altered migration, recruitment, and somatic hypermutation in the early response of marginal zone B cells to T cell-dependent antigen. J. Immunol. 174, 4567-4578 (2005).
    • (2005) J. Immunol. , vol.174 , pp. 4567-4578
    • Phan, T.G.1    Gardam, S.2    Basten, A.3    Brink, R.4
  • 43
    • 0028178784 scopus 로고
    • T cell receptor antagonist peptides induce positive selection
    • Hogquist, K. A. et al. T cell receptor antagonist peptides induce positive selection. Cell 76, 17-27 (1994).
    • (1994) Cell , vol.76 , pp. 17-27
    • Hogquist, K.A.1
  • 44
    • 84884594542 scopus 로고    scopus 로고
    • A murine model for non-alcoholic steatohepatitis showing evidence of association between diabetes and hepatocellular carcinoma
    • Fujii, M. et al. A murine model for non-alcoholic steatohepatitis showing evidence of association between diabetes and hepatocellular carcinoma. Med. Mol. Morphol. 46, 141-152 (2013).
    • (2013) Med. Mol. Morphol. , vol.46 , pp. 141-152
    • Fujii, M.1
  • 45
    • 84951755323 scopus 로고    scopus 로고
    • Histology of nonalcoholic fatty liver disease and nonalcoholic steatohepatitis in adults and children
    • Kleiner, D. E. & Makhlouf, H. R. Histology of nonalcoholic fatty liver disease and nonalcoholic steatohepatitis in adults and children. Clin. Liver Dis. 20, 293-312 (2016).
    • (2016) Clin. Liver Dis. , vol.20 , pp. 293-312
    • Kleiner, D.E.1    Makhlouf, H.R.2
  • 46
    • 74549217325 scopus 로고    scopus 로고
    • Hepatocyte IKKβ /NFκ B inhibits tumor promotion and progression by preventing oxidative stress-driven STAT3 activation
    • He, G. et al. Hepatocyte IKKβ /NFκ B inhibits tumor promotion and progression by preventing oxidative stress-driven STAT3 activation. Cancer Cell 17, 286-297 (2010).
    • (2010) Cancer Cell , vol.17 , pp. 286-297
    • He, G.1
  • 47
    • 84865461464 scopus 로고    scopus 로고
    • Interleukin-17 signaling in inflammatory, Kupffer cells, and hepatic stellate cells exacerbates liver fibrosis in mice
    • e761-763
    • Meng, F., et al. Interleukin-17 signaling in inflammatory, Kupffer cells, and hepatic stellate cells exacerbates liver fibrosis in mice. Gastroenterology 143, 765-776 e761-763 (2012).
    • (2012) Gastroenterology , vol.143 , pp. 765-776
    • Meng, F.1
  • 48
    • 0034432957 scopus 로고    scopus 로고
    • A new method for quantitative analysis of the mouse T-cell receptor V region repertoires: Comparison of repertoires among strains
    • Yoshida, R. et al. A new method for quantitative analysis of the mouse T-cell receptor V region repertoires: comparison of repertoires among strains. Immunogenetics 52, 35-45 (2000).
    • (2000) Immunogenetics , vol.52 , pp. 35-45
    • Yoshida, R.1
  • 49
    • 84871809302 scopus 로고    scopus 로고
    • STAR: Ultrafast universal RNA-seq aligner
    • Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 15-21
    • Dobin, A.1
  • 50
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 51
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 53
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview-extensible visualization of microarray data
    • Saldanha, A. J. Java Treeview-extensible visualization of microarray data. Bioinformatics 20, 3246-3248 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 54
    • 84951019738 scopus 로고    scopus 로고
    • Meta-and orthogonal integration of influenza "OMICs" data defines a role for ubr4 in virus budding
    • Tripathi, S. et al. Meta-and orthogonal integration of influenza "OMICs" data defines a role for ubr4 in virus budding. Cell Host Microbe 18, 723-735 (2015).
    • (2015) Cell Host Microbe , vol.18 , pp. 723-735
    • Tripathi, S.1
  • 55
    • 0038054341 scopus 로고    scopus 로고
    • PGC-1a-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
    • Mootha, V. K. et al. PGC-1a-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet. 34, 267-273 (2003).
    • (2003) Nat. Genet. , vol.34 , pp. 267-273
    • Mootha, V.K.1
  • 56
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545-15550 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 57
    • 84922551107 scopus 로고    scopus 로고
    • Trans-ancestry mutational landscape of hepatocellular carcinoma genomes
    • Totoki, Y. et al. Trans-ancestry mutational landscape of hepatocellular carcinoma genomes. Nat. Genet. 46, 1267-1273 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 1267-1273
    • Totoki, Y.1
  • 58
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 59
    • 84896009017 scopus 로고    scopus 로고
    • From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline
    • Van der Auwera, G.A., et al. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr. Protoc. Bioinform. 43, 11.10.1-33 (2013).
    • (2013) Curr. Protoc. Bioinform. , vol.43 , pp. 1110-1133
    • Van Der Auwera, G.A.1
  • 60
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 61
    • 80052851950 scopus 로고    scopus 로고
    • Mouse genomic variation and its effect on phenotypes and gene regulation
    • Keane, T. M. et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477, 289-294 (2011).
    • (2011) Nature , vol.477 , pp. 289-294
    • Keane, T.M.1
  • 62
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
    • Cingolani, P. et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly 6, 80-92 (2012).
    • (2012) Fly , vol.6 , pp. 80-92
    • Cingolani, P.1
  • 63
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir, H., Robinson, J. T. & Mesirov, J. P. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14, 178-192 (2013).
    • (2013) Brief. Bioinform. , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 64
    • 84995463461 scopus 로고    scopus 로고
    • Comparison of gene expression patterns between mouse models of nonalcoholic fatty liver disease and liver tissues from patients
    • Teufel, A., et al. Comparison of gene expression patterns between mouse models of nonalcoholic fatty liver disease and liver tissues from patients. Gastroenterology 151, 513-525 (2016).
    • (2016) Gastroenterology , vol.151 , pp. 513-525
    • Teufel, A.1
  • 65
    • 84984878984 scopus 로고    scopus 로고
    • OpenMS: A flexible open-source software platform for mass spectrometry data analysis
    • Röst, H. L. et al. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat. Methods 13, 741-748 (2016).
    • (2016) Nat. Methods , vol.13 , pp. 741-748
    • Röst, H.L.1
  • 66
    • 85029425714 scopus 로고    scopus 로고
    • Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis
    • Xia, J. & Wishart, D.S. Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis. Curr. Protoc. Bioinform. 55, 14.10.11-14.10.91 (2016).
    • (2016) Curr. Protoc. Bioinform. , vol.55 , pp. 141011-141091
    • Xia, J.1    Wishart, D.S.2
  • 67
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso, J. G. et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624 (2012).
    • (2012) ISME J. , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1
  • 68
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 69
    • 85020080492 scopus 로고    scopus 로고
    • Deblur rapidly resolves single-nucleotide community sequence patterns
    • Ammon, A. et al. Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2, e00191-16 (2017).
    • (2017) MSystems , vol.2 , pp. e00191-e00216
    • Ammon, A.1
  • 70
  • 71
    • 84857122937 scopus 로고    scopus 로고
    • An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
    • McDonald, D. et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6, 610-618 (2012).
    • (2012) ISME J , vol.6 , pp. 610-618
    • McDonald, D.1
  • 72
    • 84868270724 scopus 로고    scopus 로고
    • The Biological Observation Matrix (BIOM) format or: How I learned to stop worrying and love the ome-ome
    • McDonald, D. et al. The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1, 7 (2012).
    • (2012) Gigascience , vol.1 , pp. 7
    • McDonald, D.1
  • 73
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith, D. P. Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61, 1-10 (1992).
    • (1992) Biol. Conserv. , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 74
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone, C. & Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 75
    • 84991526597 scopus 로고    scopus 로고
    • EMPeror: A tool for visualizing high-throughput microbial community data
    • Vázquez-Baeza, Y., Pirrung, M., Gonzalez, A. & Knight, R. EMPeror: a tool for visualizing high-throughput microbial community data. Gigascience 2, 16 (2013).
    • (2013) Gigascience , vol.2 , pp. 16
    • Vázquez-Baeza, Y.1    Pirrung, M.2    Gonzalez, A.3    Knight, R.4
  • 76
    • 84946878517 scopus 로고    scopus 로고
    • Analysis of composition of microbiomes: A novel method for studying microbial composition
    • Mandal, S. et al. Analysis of composition of microbiomes: a novel method for studying microbial composition. Microb. Ecol. Health Dis. 26, 27663 (2015).
    • (2015) Microb. Ecol. Health Dis. , vol.26 , pp. 27663
    • Mandal, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.