-
1
-
-
79961109150
-
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
-
Alikhan, N.-F., Petty, N. K., Ben Zakour, N. L., and Beatson, S. A. (2011). BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12:402. doi: 10.1186/1471-2164-12-402
-
(2011)
BMC Genomics
, vol.12
, pp. 402
-
-
Alikhan, N.-F.1
Petty, N.K.2
Ben Zakour, N.L.3
Beatson, S.A.4
-
2
-
-
79961163061
-
Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India
-
Avasthi, T. S., Kumar, N., Baddam, R., Hussain, A., Nandanwar, N., Jadhav, S., et al. (2011). Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. J. Bacteriol. 193, 4272-4273. doi: 10.1128/JB.05413-11
-
(2011)
J. Bacteriol
, vol.193
, pp. 4272-4273
-
-
Avasthi, T.S.1
Kumar, N.2
Baddam, R.3
Hussain, A.4
Nandanwar, N.5
Jadhav, S.6
-
3
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich, A., Nurk, S., Antipov, D., Gurevich, A. A., Dvorkin, M., Kulikov, A. S., et al. (2012). SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. doi: 10.1089/cmb.2012.0021
-
(2012)
J. Comput. Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
-
4
-
-
79955005058
-
Escherichia coli from animal reservoirs as a potential source of human extraintestinal pathogenic E. coli
-
Bélanger, L., Garenaux, A., Harel, J., Boulianne, M., Nadeau, E., and Dozois, C. M. (2011). Escherichia coli from animal reservoirs as a potential source of human extraintestinal pathogenic E. coli. FEMS Immunol. Med. Microbiol. 62, 1-10. doi: 10.1111/j.1574-695X.2011.00797.x
-
(2011)
FEMS Immunol. Med. Microbiol
, vol.62
, pp. 1-10
-
-
Bélanger, L.1
Garenaux, A.2
Harel, J.3
Boulianne, M.4
Nadeau, E.5
Dozois, C.M.6
-
5
-
-
84875508519
-
Frequent occurrence of extended-spectrum beta-lactamase-and transferable AmpC Beta-lactamase-producing Escherichia coli on domestic chicken meat in Sweden
-
Borjesson, S., Egervarn, M., Lindblad, M., and Englund, S. (2013). Frequent occurrence of extended-spectrum beta-lactamase-and transferable AmpC Beta-lactamase-producing Escherichia coli on domestic chicken meat in Sweden. Appl. Environ. Microbiol. 79, 2463-2466. doi: 10.1128/AEM.03893-12
-
(2013)
Appl. Environ. Microbiol
, vol.79
, pp. 2463-2466
-
-
Borjesson, S.1
Egervarn, M.2
Lindblad, M.3
Englund, S.4
-
6
-
-
85032824264
-
The prevalence of extended-spectrum Beta-lactamase-producing multidrug-resistant Escherichia Coli in poultry chickens and variation according to farming practices in Punjab, India
-
Brower, C. H., Mandal, S., Hayer, S., Sran, M., Zehra, A., Patel, S. J., et al. (2017). The prevalence of extended-spectrum Beta-lactamase-producing multidrug-resistant Escherichia Coli in poultry chickens and variation according to farming practices in Punjab, India. Environ. Health Perspect. 125, 1-10. doi: 10.1289/EHP292
-
(2017)
Environ. Health Perspect
, vol.125
, pp. 1-10
-
-
Brower, C.H.1
Mandal, S.2
Hayer, S.3
Sran, M.4
Zehra, A.5
Patel, S.J.6
-
7
-
-
84893488293
-
Widespread dissemination of CTX-M-15 genotype extended-spectrum-β-lactamase-producing enterobacteriaceae among patients presenting to community hospitals in the southeastern United States
-
Chen, L. F., Freeman, J. T., Nicholson, B., Keiger, A., Lancaster, S., Joyce, M., et al. (2014). Widespread dissemination of CTX-M-15 genotype extended-spectrum-β-lactamase-producing enterobacteriaceae among patients presenting to community hospitals in the southeastern United States. Antimicrob. Agents Chemother. 58, 1200-1202. doi: 10.1128/AAC.01099-13
-
(2014)
Antimicrob. Agents Chemother
, vol.58
, pp. 1200-1202
-
-
Chen, L.F.1
Freeman, J.T.2
Nicholson, B.3
Keiger, A.4
Lancaster, S.5
Joyce, M.6
-
8
-
-
85126812130
-
Microbiological safety of chicken litter or chicken litter-based organic fertilizers: a review
-
Chen, Z., and Jiang, X. (2014). Microbiological safety of chicken litter or chicken litter-based organic fertilizers: a review. Agriculture 4, 1-29. doi: 10.3390/agriculture4010001
-
(2014)
Agriculture
, vol.4
, pp. 1-29
-
-
Chen, Z.1
Jiang, X.2
-
9
-
-
84873324306
-
The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups
-
Clermont, O., Christenson, J. K., Denamur, E., and Gordon, D. M. (2013). The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ. Microbiol. Rep. 5, 58-65. doi: 10.1111/1758-2229.12019
-
(2013)
Environ. Microbiol. Rep
, vol.5
, pp. 58-65
-
-
Clermont, O.1
Christenson, J.K.2
Denamur, E.3
Gordon, D.M.4
-
10
-
-
61849174344
-
VET01-A4 Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals; Approved Standard, Fourth Edn
-
Wayne, PA: CLSI
-
CLSI (2013). VET01-A4 Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals; Approved Standard, Fourth Edn. Wayne, PA: CLSI
-
(2013)
-
-
-
11
-
-
84960488645
-
Is the concept of avian pathogenic Escherichia coli as a single pathotype fundamentally flawed?
-
Collingwood, C., Kemmett, K., Williams, N., and Wigley, P. (2014). Is the concept of avian pathogenic Escherichia coli as a single pathotype fundamentally flawed? Front. Vet. Sci. 1:5. doi: 10.3389/fvets.2014.00005
-
(2014)
Front. Vet. Sci
, vol.1
, pp. 5
-
-
Collingwood, C.1
Kemmett, K.2
Williams, N.3
Wigley, P.4
-
12
-
-
84919624825
-
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages
-
de Been, M., Lanza, V. F., de Toro, M., Scharringa, J., Dohmen, W., Du, Y., et al. (2014). Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages. PLOS Genet. 10:e1004776. doi: 10.1371/journal.pgen.1004776
-
(2014)
PLOS Genet
, vol.10
-
-
de Been, M.1
Lanza, V.F.2
de Toro, M.3
Scharringa, J.4
Dohmen, W.5
Du, Y.6
-
13
-
-
84881069104
-
Emerging & re-emerging infections in India: an overview
-
Dikid, T., Jain, S. K., Sharma, A., Kumar, A., and Narain, J. P. (2013). Emerging & re-emerging infections in India: an overview. Indian J. Med. Res. 138, 19-31
-
(2013)
Indian J. Med. Res
, vol.138
, pp. 19-31
-
-
Dikid, T.1
Jain, S.K.2
Sharma, A.3
Kumar, A.4
Narain, J.P.5
-
14
-
-
84874714772
-
Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms
-
Dziva, F., Hauser, H., Connor, T. R., van Diemen, P. M., Prescott, G., Langridge, G. C., et al. (2013). Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms. Infect. Immun. 81, 838-849. doi: 10.1128/IAI.00585-12
-
(2013)
Infect. Immun
, vol.81
, pp. 838-849
-
-
Dziva, F.1
Hauser, H.2
Connor, T.R.3
van Diemen, P.M.4
Prescott, G.5
Langridge, G.C.6
-
15
-
-
34247578540
-
Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they?
-
Ewers, C., Li, G., Wilking, H., Kiessling, S., Alt, K., Antáo, E.-M., et al. (2007). Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? Int. J. Med. Microbiol. 297, 163-176. doi: 10.1016/j.ijmm.2007.01.003
-
(2007)
Int. J. Med. Microbiol
, vol.297
, pp. 163-176
-
-
Ewers, C.1
Li, G.2
Wilking, H.3
Kiessling, S.4
Alt, K.5
Antáo, E.-M.6
-
16
-
-
85033795071
-
Chicken carcasses bacterial concentration at poultry slaughtering facilities
-
Firildak, G., Asan, A., and Goren, E. (2015). Chicken carcasses bacterial concentration at poultry slaughtering facilities. Asian J. Biol. Sci. 8, 16-29. doi: 10.3923/ajbs.2015.16.29
-
(2015)
Asian J. Biol. Sci
, vol.8
, pp. 16-29
-
-
Firildak, G.1
Asan, A.2
Goren, E.3
-
17
-
-
84942683938
-
Pathogenic Escherichia coli producing extended-spectrum β-Lactamases isolated from surface water and wastewater
-
Franz, E., Veenman, C., van Hoek, A. H. A. M., de Roda Husman, A., and Blaak, H. (2015). Pathogenic Escherichia coli producing extended-spectrum β-Lactamases isolated from surface water and wastewater. Sci. Rep. 5:14372. doi: 10.1038/srep14372
-
(2015)
Sci. Rep
, vol.5
, pp. 14372
-
-
Franz, E.1
Veenman, C.2
van Hoek, A.H.A.M.3
de Roda Husman, A.4
Blaak, H.5
-
18
-
-
84869216920
-
Multiresistant uropathogenic Escherichia coli from a region in India where urinary tract infections are endemic: genotypic and phenotypic characteristics of sequence type 131 isolates of the CTX-M-15 extended-spectrum-β-lactamase-producing lineage
-
Hussain, A., Ewers, C., Nandanwar, N., Guenther, S., Jadhav, S., Wieler, L. H., et al. (2012). Multiresistant uropathogenic Escherichia coli from a region in India where urinary tract infections are endemic: genotypic and phenotypic characteristics of sequence type 131 isolates of the CTX-M-15 extended-spectrum-β-lactamase-producing lineage. Antimicrob. Agents Chemother. 56, 6358-6365. doi: 10.1128/AAC.01099-12
-
(2012)
Antimicrob. Agents Chemother
, vol.56
, pp. 6358-6365
-
-
Hussain, A.1
Ewers, C.2
Nandanwar, N.3
Guenther, S.4
Jadhav, S.5
Wieler, L.H.6
-
19
-
-
84912099582
-
Genotypic and phenotypic profiles of Escherichia coli isolates belonging to clinical sequence type 131 (ST131), clinical non-ST131, and fecal non-ST131 lineages from India
-
Hussain, A., Ranjan, A., Nandanwar, N., Babbar, A., Jadhav, S., and Ahmed, N. (2014). Genotypic and phenotypic profiles of Escherichia coli isolates belonging to clinical sequence type 131 (ST131), clinical non-ST131, and fecal non-ST131 lineages from India. Antimicrob. Agents Chemother. 58, 7240-7249. doi: 10.1128/AAC.03320-14
-
(2014)
Antimicrob. Agents Chemother
, vol.58
, pp. 7240-7249
-
-
Hussain, A.1
Ranjan, A.2
Nandanwar, N.3
Babbar, A.4
Jadhav, S.5
Ahmed, N.6
-
20
-
-
79953056293
-
Virulence characteristics and genetic affinities of multiple drug resistant uropathogenic Escherichia coli from a semi urban locality in India
-
Jadhav, S., Hussain, A., Devi, S., Kumar, A., Parveen, S., Gandham, N., et al. (2011). Virulence characteristics and genetic affinities of multiple drug resistant uropathogenic Escherichia coli from a semi urban locality in India. PLOS ONE 6:e18063. doi: 10.1371/journal.pone.0018063
-
(2011)
PLOS ONE
, vol.6
-
-
Jadhav, S.1
Hussain, A.2
Devi, S.3
Kumar, A.4
Parveen, S.5
Gandham, N.6
-
21
-
-
77952357309
-
Escherichia coli isolates from broiler chicken meat, broiler chickens, pork, and pigs share phylogroups and antimicrobial resistance with community-dwelling humans and patients with urinary tract infection
-
Jakobsen, L., Kurbasic, A., Skjøt-Rasmussen, L., Ejrnæs, K., Porsbo, L. J., Pedersen, K., et al. (2010). Escherichia coli isolates from broiler chicken meat, broiler chickens, pork, and pigs share phylogroups and antimicrobial resistance with community-dwelling humans and patients with urinary tract infection. Foodborne Pathog. Dis. 7, 537-547. doi: 10.1089/fpd.2009.0409
-
(2010)
Foodborne Pathog. Dis
, vol.7
, pp. 537-547
-
-
Jakobsen, L.1
Kurbasic, A.2
Skjøt-Rasmussen, L.3
Ejrnæs, K.4
Porsbo, L.J.5
Pedersen, K.6
-
22
-
-
0038676835
-
Isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli from retail chicken products isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli
-
Johnson, J. R., Murray, A. C., Gajewski, A., Sullivan, M., Snippes, P., Kuskowski, M. A., et al. (2003). Isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli from retail chicken products isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli. Antimicrob. Agents Chemother. 47, 2161-2168. doi: 10.1128/AAC.47.7.2161
-
(2003)
Antimicrob. Agents Chemother
, vol.47
, pp. 2161-2168
-
-
Johnson, J.R.1
Murray, A.C.2
Gajewski, A.3
Sullivan, M.4
Snippes, P.5
Kuskowski, M.A.6
-
23
-
-
1842508193
-
Pathogenic Escherichia coli
-
Kaper, J. B., Nataro, J. P., and Mobley, H. L. T. (2004). Pathogenic Escherichia coli. Nat. Rev. Microbiol. 2, 123-140. doi: 10.1038/nrmicro818
-
(2004)
Nat. Rev. Microbiol
, vol.2
, pp. 123-140
-
-
Kaper, J.B.1
Nataro, J.P.2
Mobley, H.L.T.3
-
24
-
-
85041586052
-
Evaluation of genotypical antimicrobial resistance in ESBL producing Escherichia coli phylogenetic groups isolated from retail poultry meat
-
[Epub ahead of print]
-
Klimiene, I., Virgailis, M., Kerziene, S., Šiugždiniene, R., Mockeliunas, R., and Ružauskas, M. (2017). Evaluation of genotypical antimicrobial resistance in ESBL producing Escherichia coli phylogenetic groups isolated from retail poultry meat. J. Food Saf. e12370. doi: 10.1111/jfs.12370 [Epub ahead of print]
-
(2017)
J. Food Saf
-
-
Klimiene, I.1
Virgailis, M.2
Kerziene, S.3
Šiugždiniene, R.4
Mockeliunas, R.5
Ružauskas, M.6
-
25
-
-
79955807752
-
EcoR phylogenetic analysis and virulence genotyping of avian pathogenic Escherichia coli strains and Escherichia coli isolates from commercial chicken carcasses in Southern Brazil
-
Kobayashi, R. K. T., Aquino, I., Ferreira, A. L., da, S., and Vidotto, M. C. (2011). EcoR phylogenetic analysis and virulence genotyping of avian pathogenic Escherichia coli strains and Escherichia coli isolates from commercial chicken carcasses in Southern Brazil. Foodborne Pathog. Dis. 8, 631-634. doi: 10.1089/fpd.2010.0726
-
(2011)
Foodborne Pathog. Dis
, vol.8
, pp. 631-634
-
-
Kobayashi, R.K.T.1
Aquino, I.2
Ferreira, A.L.3
da, S.4
Vidotto, M.C.5
-
26
-
-
84947080992
-
Comparison of antibiotic resistance and virulence factors among Escherichia coli isolated from conventional and free-range poultry
-
Koga, V. L., Scandorieiro, S., Vespero, E. C., Oba, A., de Brito, B. G., de Brito, K. C. T., et al. (2015). Comparison of antibiotic resistance and virulence factors among Escherichia coli isolated from conventional and free-range poultry. Biomed. Res. Int. 2015:618752. doi: 10.1155/2015/618752
-
(2015)
Biomed. Res. Int
, vol.2015
-
-
Koga, V.L.1
Scandorieiro, S.2
Vespero, E.C.3
Oba, A.4
de Brito, B.G.5
de Brito, K.C.T.6
-
27
-
-
84858200759
-
A review of antibiotic use in food animals: perspective, policy, and potential
-
Landers, T. F., Cohen, B., Wittum, T. E., and Larson, E. L. (2012). A review of antibiotic use in food animals: perspective, policy, and potential. Public Health Rep. 127, 4-22. doi: 10.1177/003335491212700103
-
(2012)
Public Health Rep
, vol.127
, pp. 4-22
-
-
Landers, T.F.1
Cohen, B.2
Wittum, T.E.3
Larson, E.L.4
-
28
-
-
84962054170
-
Antibiotic resistance in India: drivers and opportunities for action
-
Laxminarayan, R., and Chaudhury, R. R. (2016). Antibiotic resistance in India: drivers and opportunities for action. PLOS Med. 13:e1001974. doi: 10.1371/journal.pmed.1001974
-
(2016)
PLOS Med
, vol.13
-
-
Laxminarayan, R.1
Chaudhury, R.R.2
-
29
-
-
75449095223
-
Avian colibacillosis and salmonellosis: a closer look at epidemiology, pathogenesis, diagnosis, control and public health concerns
-
Lutful Kabir, S. M. (2010). Avian colibacillosis and salmonellosis: a closer look at epidemiology, pathogenesis, diagnosis, control and public health concerns. Int. J. Environ. Res. Public Health 7, 89-114. doi: 10.3390/ijerph7010089
-
(2010)
Int. J. Environ. Res. Public Health
, vol.7
, pp. 89-114
-
-
Lutful Kabir, S.M.1
-
30
-
-
84886679487
-
Human and avian extraintestinal pathogenic Escherichia coli: infections, zoonotic risks, and antibiotic resistance trends
-
Mellata, M. (2013). Human and avian extraintestinal pathogenic Escherichia coli: infections, zoonotic risks, and antibiotic resistance trends. Foodborne Pathog. Dis. 10, 916-932. doi: 10.1089/fpd.2013.1533
-
(2013)
Foodborne Pathog. Dis
, vol.10
, pp. 916-932
-
-
Mellata, M.1
-
31
-
-
84921419346
-
Zoonotic potential of Escherichia coli isolates from retail chicken meat products and eggs
-
Mitchell, N. M., Johnson, J. R., Johnston, B., Curtiss Iii, R., and Mellata, M. (2015). Zoonotic potential of Escherichia coli isolates from retail chicken meat products and eggs. Appl. Environ. Microbiol. 81, 1177-1187. doi: 10.1128/AEM.03524-14
-
(2015)
Appl. Environ. Microbiol
, vol.81
, pp. 1177-1187
-
-
Mitchell, N.M.1
Johnson, J.R.2
Johnston, B.3
Curtiss Iii, R.4
Mellata, M.5
-
32
-
-
84994870211
-
Population structure and molecular epidemiology of human clinical multi-drug resistant (MDR) Escherichia coli strains from Pune, India
-
Nandanwar, N., Hussain, A., Ranjan, A., Jadhav, S., and Ahmed, N. (2016). Population structure and molecular epidemiology of human clinical multi-drug resistant (MDR) Escherichia coli strains from Pune, India. Int. J. Infect. Dis. 45, 343-344. doi: 10.1016/j.ijid.2016.02.741
-
(2016)
Int. J. Infect. Dis
, vol.45
, pp. 343-344
-
-
Nandanwar, N.1
Hussain, A.2
Ranjan, A.3
Jadhav, S.4
Ahmed, N.5
-
33
-
-
84927689551
-
Extraintestinal pathogenic Escherichia coli (ExPEC) of human and avian origin belonging to sequence type complex 95 (STC95) portray indistinguishable virulence features
-
Nandanwar, N., Janssen, T., Kühl, M., Ahmed, N., Ewers, C., and Wieler, L. H. (2014). Extraintestinal pathogenic Escherichia coli (ExPEC) of human and avian origin belonging to sequence type complex 95 (STC95) portray indistinguishable virulence features. Int. J. Med. Microbiol. 95, 6-13. doi: 10.1016/j.ijmm.2014.06.009
-
(2014)
Int. J. Med. Microbiol
, vol.95
, pp. 6-13
-
-
Nandanwar, N.1
Janssen, T.2
Kühl, M.3
Ahmed, N.4
Ewers, C.5
Wieler, L.H.6
-
34
-
-
84903616595
-
Escherichia coli st131, an intriguing clonal group
-
Nicolas-Chanoine, M. H., Bertrand, X., and Madec, J. Y. (2014). Escherichia coli st131, an intriguing clonal group. Clin. Microbiol. Rev. 27, 543-574. doi: 10.1128/CMR.00125-13
-
(2014)
Clin. Microbiol. Rev
, vol.27
, pp. 543-574
-
-
Nicolas-Chanoine, M.H.1
Bertrand, X.2
Madec, J.Y.3
-
35
-
-
84891804612
-
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
-
Overbeek, R., Olson, R., Pusch, G. D., Olsen, G. J., Davis, J. J., Disz, T., et al. (2014). The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 42, D206-D214. doi: 10.1093/nar/gkt1226
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
-
36
-
-
84856468953
-
NGS QC toolkit: a toolkit for quality control of next generation sequencing data
-
Patel, R. K., and Jain, M. (2012). NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLOS ONE 7:e30619. doi: 10.1371/journal.pone.0030619
-
(2012)
PLOS ONE
, vol.7
-
-
Patel, R.K.1
Jain, M.2
-
37
-
-
85009951597
-
Genome dynamics and molecular infection epidemiology of multidrug-resistant Helicobacter pullorum isolates obtained from broiler and free-range chickens in India
-
Qumar, S., Majid, M., Kumar, N., Tiwari, S. K., Semmler, T., Devi, S., et al. (2017). Genome dynamics and molecular infection epidemiology of multidrug-resistant Helicobacter pullorum isolates obtained from broiler and free-range chickens in India. Appl. Environ. Microbiol. 83, e2305-e2316. doi: 10.1128/AEM.02305-16
-
(2017)
Appl. Environ. Microbiol
, vol.83
, pp. e2305-e2316
-
-
Qumar, S.1
Majid, M.2
Kumar, N.3
Tiwari, S.K.4
Semmler, T.5
Devi, S.6
-
38
-
-
84942279493
-
Genomic and functional portrait of a highly virulent, CTX-M-15-producing H30-Rx subclone of Escherichia coli sequence type (ST) 131
-
Ranjan, A., Shaik, S., Hussain, A., Nandanwar, N., Semmler, T., Jadhav, S., et al. (2015). Genomic and functional portrait of a highly virulent, CTX-M-15-producing H30-Rx subclone of Escherichia coli sequence type (ST) 131. Antimicrob. Agents Chemother. 59, 6087-6095. doi: 10.1128/AAC.01447-15
-
(2015)
Antimicrob. Agents Chemother
, vol.59
, pp. 6087-6095
-
-
Ranjan, A.1
Shaik, S.2
Hussain, A.3
Nandanwar, N.4
Semmler, T.5
Jadhav, S.6
-
39
-
-
84994817803
-
Molecular epidemiology and genome dynamics of New Delhi metallo-beta-lactamase (NDM) producing extraintestinal pathogenic E. coli (ExPEC) strains from India
-
Ranjan, A., Shaik, S., Mondal, A., Nandanwar, N., Hussain, A., Semmler, T., et al. (2016). Molecular epidemiology and genome dynamics of New Delhi metallo-beta-lactamase (NDM) producing extraintestinal pathogenic E. coli (ExPEC) strains from India. Antimicrob. Agents Chemother. 60, 6795-6805. doi: 10.1128/AAC.01345-16
-
(2016)
Antimicrob. Agents Chemother
, vol.60
, pp. 6795-6805
-
-
Ranjan, A.1
Shaik, S.2
Mondal, A.3
Nandanwar, N.4
Hussain, A.5
Semmler, T.6
-
40
-
-
85029160743
-
Comparative genomics of Escherichia coli isolated from skin and soft tissue and other extraintestinal infections
-
Ranjan, A., Shaik, S., Nandanwar, N., Hussain, A., Tiwari, S. K., Semmler, T., et al. (2017). Comparative genomics of Escherichia coli isolated from skin and soft tissue and other extraintestinal infections. MBio 8:e01070-17. doi: 10.1128/mBio.01070-17
-
(2017)
MBio
, vol.8
-
-
Ranjan, A.1
Shaik, S.2
Nandanwar, N.3
Hussain, A.4
Tiwari, S.K.5
Semmler, T.6
-
41
-
-
38349063378
-
Contamination of carcasses with Salmonella during poultry slaughter
-
Rasschaert, G., Houf, K., Godard, C., Wildemauwe, C., Pastuszczak-Frak, M., and De Zutter, L. (2008). Contamination of carcasses with Salmonella during poultry slaughter. J. Food Prot. 71, 146-152. doi: 10.4315/0362-028X-71.1.146
-
(2008)
J. Food Prot
, vol.71
, pp. 146-152
-
-
Rasschaert, G.1
Houf, K.2
Godard, C.3
Wildemauwe, C.4
Pastuszczak-Frak, M.5
De Zutter, L.6
-
42
-
-
21344446566
-
Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis
-
Rodriguez-Siek, K. E., Giddings, C. W., Doetkott, C., Johnson, T. J., Fakhr, M. K., and Nolan, L. K. (2005). Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis. Microbiology 151, 2097-2110. doi: 10.1099/mic.0.27499-0
-
(2005)
Microbiology
, vol.151
, pp. 2097-2110
-
-
Rodriguez-Siek, K.E.1
Giddings, C.W.2
Doetkott, C.3
Johnson, T.J.4
Fakhr, M.K.5
Nolan, L.K.6
-
43
-
-
85011634083
-
African journal of microbiology research comparison of the prevalence of antibiotic-resistant Escherichia coli isolates from commercial-layer and free-range chickens in Arusha district
-
Rugumisa, B. T., Call, D. R., Mwanyika, G. O., Subbiah, M., and Buza, J. (2016). African journal of microbiology research comparison of the prevalence of antibiotic-resistant Escherichia coli isolates from commercial-layer and free-range chickens in Arusha district. Tanzania 10, 1422-1429. doi: 10.5897/AJMR2016.8251
-
(2016)
Tanzania
, vol.10
, pp. 1422-1429
-
-
Rugumisa, B.T.1
Call, D.R.2
Mwanyika, G.O.3
Subbiah, M.4
Buza, J.5
-
44
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M. A., et al. (2000). Artemis: sequence visualization and annotation. Bioinformatics 16, 944-945. doi: 10.1093/bioinformatics/16.10.944
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
-
45
-
-
70349653960
-
Evaluation of Clinical Laboratory Standards Institute interpretive criteria for methicillin-resistant Staphylococcus pseudintermedius isolated from dogs
-
Schissler, J. R., Hillier, A., Daniels, J. B., Cole, L. K., and Gebreyes, W. A. (2009). Evaluation of Clinical Laboratory Standards Institute interpretive criteria for methicillin-resistant Staphylococcus pseudintermedius isolated from dogs. J. Vet. Diagn. Invest. 21, 684-688. doi: 10.1177/104063870902100514
-
(2009)
J. Vet. Diagn. Invest
, vol.21
, pp. 684-688
-
-
Schissler, J.R.1
Hillier, A.2
Daniels, J.B.3
Cole, L.K.4
Gebreyes, W.A.5
-
46
-
-
84973908600
-
Contig-Layout-Authenticator (CLA): a combinatorial approach to ordering and scaffolding of bacterial contigs for comparative genomics and molecular epidemiology
-
Shaik, S., Kumar, N., Lankapalli, A. K., Tiwari, S. K., Baddam, R., and Ahmed, N. (2016). Contig-Layout-Authenticator (CLA): a combinatorial approach to ordering and scaffolding of bacterial contigs for comparative genomics and molecular epidemiology. PLOS ONE 11:e0155459. doi: 10.1371/journal.pone.0155459
-
(2016)
PLOS ONE
, vol.11
-
-
Shaik, S.1
Kumar, N.2
Lankapalli, A.K.3
Tiwari, S.K.4
Baddam, R.5
Ahmed, N.6
-
47
-
-
33746050389
-
Potential impacts of antibiotic use in poultry production
-
Singer, R. S., and Hofacre, C. L. (2006). Potential impacts of antibiotic use in poultry production. Avian. Dis. 50, 161-172. doi: 10.1637/7569-033106R.1
-
(2006)
Avian. Dis
, vol.50
, pp. 161-172
-
-
Singer, R.S.1
Hofacre, C.L.2
-
48
-
-
85012281865
-
Population and agro climatic zones in India: an analytical analysis
-
Singh, P. (2014). Population and agro climatic zones in India: an analytical analysis. Procedia Soc. Behav. Sci. 120, 268-278. doi: 10.1016/j.sbspro.2014.02.104
-
(2014)
Procedia Soc. Behav. Sci
, vol.120
, pp. 268-278
-
-
Singh, P.1
-
49
-
-
80055045142
-
Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms
-
Totsika, M., Beatson, S. A., Sarkar, S., Phan, M. D., Petty, N. K., Bachmann, N., et al. (2011). Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms. PLOS ONE 6:e26578. doi: 10.1371/journal.pone.0026578
-
(2011)
PLOS ONE
, vol.6
-
-
Totsika, M.1
Beatson, S.A.2
Sarkar, S.3
Phan, M.D.4
Petty, N.K.5
Bachmann, N.6
-
50
-
-
84965190732
-
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
-
Treangen, T. J., Ondov, B. D., Koren, S., and Phillippy, A. M. (2014). The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biol. 15:524. doi: 10.1186/PREACCEPT-2573980311437212
-
(2014)
Genome Biol
, vol.15
, pp. 524
-
-
Treangen, T.J.1
Ondov, B.D.2
Koren, S.3
Phillippy, A.M.4
-
51
-
-
0034992069
-
Antibiotic resistance of faecal Escherichia coli in poultry, poultry farmers and poultry slaughterers
-
van den Bogaard, A. E., London, N., Driessen, C., and Stobberingh, E. E. (2001). Antibiotic resistance of faecal Escherichia coli in poultry, poultry farmers and poultry slaughterers. J. Antimicrob. Chemother. 47, 763-771. doi: 10.1093/JAC/47.6.763
-
(2001)
J. Antimicrob. Chemother
, vol.47
, pp. 763-771
-
-
van den Bogaard, A.E.1
London, N.2
Driessen, C.3
Stobberingh, E.E.4
-
52
-
-
80155146941
-
Contamination rates and antimicrobial resistance in Enterococcus spp., Escherichia coli, and Salmonella isolated from "no antibiotics added"-labeled chicken products
-
Zhang, J., Massow, A., Stanley, M., Papariella, M., Chen, X., Kraft, B., et al. (2011). Contamination rates and antimicrobial resistance in Enterococcus spp., Escherichia coli, and Salmonella isolated from "no antibiotics added"-labeled chicken products. Foodborne Pathog. Dis. 8, 1147-1152. doi: 10.1089/fpd.2011.0852
-
(2011)
Foodborne Pathog. Dis
, vol.8
, pp. 1147-1152
-
-
Zhang, J.1
Massow, A.2
Stanley, M.3
Papariella, M.4
Chen, X.5
Kraft, B.6
|