-
1
-
-
79951819976
-
New Delhi metallo-beta-lactamase and multidrug resistance: A global SOS?
-
Bonomo RA. 2011. New Delhi metallo-beta-lactamase and multidrug resistance: A global SOS? Clin Infect Dis 52:485-487. http://dx.doi.org/10.1093/cid/ciq179.
-
(2011)
Clin Infect Dis
, vol.52
, pp. 485-487
-
-
Bonomo, R.A.1
-
2
-
-
84926642568
-
Antibiotics and bacterial resistance in the 21st century
-
Fair RJ, Tor Y. 2014. Antibiotics and bacterial resistance in the 21st century. Perspect Medicin Chem 6:25-64. http://dx.doi.org/10.4137/PMC.S14459.
-
(2014)
Perspect Medicin Chem
, vol.6
, pp. 25-64
-
-
Fair, R.J.1
Tor, Y.2
-
3
-
-
34547422759
-
Carbapenemases: The versatile betalactamases
-
Queenan AM, Bush K. 2007. Carbapenemases: The versatile betalactamases. Clin Microbiol Rev 20:440-458. http://dx.doi.org/10.1128/CMR.00001-07.
-
(2007)
Clin Microbiol Rev
, vol.20
, pp. 440-458
-
-
Queenan, A.M.1
Bush, K.2
-
5
-
-
84863376228
-
Novel plasmid and its variant harboring both a blaNDM-1 gene and type IV secretion system in clinical isolates of Acinetobacter lwoffii
-
Hu H, Hu Y, Pan Y, Liang H, Wang H, Wang X, Hao Q, Yang X, Yang X, Xiao X, Luan C, Yang Y, Cui Y, Yang R, Gao GF, Song Y, Zhu B. 2012. Novel plasmid and its variant harboring both a blaNDM-1 gene and type IV secretion system in clinical isolates of Acinetobacter lwoffii. Antimicrob Agents Chemother 56:1698-1702. http://dx.doi.org/10.1128/AAC.06199-11.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 1698-1702
-
-
Hu, H.1
Hu, Y.2
Pan, Y.3
Liang, H.4
Wang, H.5
Wang, X.6
Hao, Q.7
Yang, X.8
Yang, X.9
Xiao, X.10
Luan, C.11
Yang, Y.12
Cui, Y.13
Yang, R.14
Gao, G.F.15
Song, Y.16
Zhu, B.17
-
6
-
-
77149165713
-
Updated functional classification of betalactamases
-
Bush K, Jacoby GA. 2010. Updated functional classification of betalactamases. Antimicrob Agents Chemother 54:969-976. http://dx.doi.org/10.1128/AAC.01009-09.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 969-976
-
-
Bush, K.1
Jacoby, G.A.2
-
7
-
-
79956302864
-
Characteristics of NDM-1-producing Escherichia coli isolates that belong to the successful and virulent clone ST131
-
Peirano G, Schreckenberger PC, Pitout JD. 2011. Characteristics of NDM-1-producing Escherichia coli isolates that belong to the successful and virulent clone ST131. Antimicrob Agents Chemother 55:2986-2988. http://dx.doi.org/10.1128/AAC.01763-10.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 2986-2988
-
-
Peirano, G.1
Schreckenberger, P.C.2
Pitout, J.D.3
-
8
-
-
84876264830
-
NDM-8 metallo-beta-lactamase in a multidrugresistant Escherichia coli strain isolated in Nepal
-
Tada T, Miyoshi-Akiyama T, Dahal RK, Sah MK, Ohara H, Kirikae T, Pokhrel BM. 2013. NDM-8 metallo-beta-lactamase in a multidrugresistant Escherichia coli strain isolated in Nepal. Antimicrob Agents Chemother 57:2394-2396. http://dx.doi.org/10.1128/AAC.02553-12.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 2394-2396
-
-
Tada, T.1
Miyoshi-Akiyama, T.2
Dahal, R.K.3
Sah, M.K.4
Ohara, H.5
Kirikae, T.6
Pokhrel, B.M.7
-
9
-
-
84892143221
-
Novel-lactamase inhibitors: A therapeutic hope against the scourge of multidrug resistance
-
Watkins RR, Papp-Wallace KM, Drawz SM, Bonomo RA. 2013. Novel-lactamase inhibitors: A therapeutic hope against the scourge of multidrug resistance. Front Microbiol 4:392. http://dx.doi.org/10.3389/fmicb.2013.00392.
-
(2013)
Front Microbiol
, vol.4
, pp. 392
-
-
Watkins, R.R.1
Papp-Wallace, K.M.2
Drawz, S.M.3
Bonomo, R.A.4
-
10
-
-
84916918543
-
Sepsis caused by New Delhi metallo-beta-lactamase (blaNDM-1) and qnrD-producing Morganella morganii, treated successfully with fosfomycin and meropenem: Case report and literature review
-
Seija V, Medina Presentado JC, Bado I, Papa Ezdra R, Batista N, Gutierrez C, Guirado M, Vidal M, Nin M, Vignoli R. 2015. Sepsis caused by New Delhi metallo-beta-lactamase (blaNDM-1) and qnrD-producing Morganella morganii, treated successfully with fosfomycin and meropenem: case report and literature review. Int J Infect Dis 30:20-26. http://dx.doi.org/10.1016/j.ijid.2014.09.010.
-
(2015)
Int J Infect Dis
, vol.30
, pp. 20-26
-
-
Seija, V.1
Medina Presentado, J.C.2
Bado, I.3
Papa Ezdra, R.4
Batista, N.5
Gutierrez, C.6
Guirado, M.7
Vidal, M.8
Nin, M.9
Vignoli, R.10
-
11
-
-
79956317933
-
Emergence of NDM-1-producing Enterobacteriaceae in Belgium
-
Bogaerts P, Bouchahrouf W, de Castro RR, Deplano A, Berhin C, Pierard D, Denis O, Glupczynski Y. 2011. Emergence of NDM-1-producing Enterobacteriaceae in Belgium. Antimicrob Agents Chemother 55:3036-3038. http://dx.doi.org/10.1128/AAC.00049-11.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 3036-3038
-
-
Bogaerts, P.1
Bouchahrouf, W.2
De Castro, R.R.3
Deplano, A.4
Berhin, C.5
Pierard, D.6
Denis, O.7
Glupczynski, Y.8
-
12
-
-
84877842908
-
Emergence of a New Delhi metallo-lactamase (NDM-1)-encoding gene in clinical Escherichia coli isolates recovered from companion animals in the United States
-
Shaheen BW, Nayak R, Boothe DM. 2013. Emergence of a New Delhi metallo-lactamase (NDM-1)-encoding gene in clinical Escherichia coli isolates recovered from companion animals in the United States. Antimicrob Agents Chemother 57:2902-2903. http://dx.doi.org/10.1128/AAC.02028-12.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 2902-2903
-
-
Shaheen, B.W.1
Nayak, R.2
Boothe, D.M.3
-
13
-
-
79958818528
-
Carbapenem-resistant Enterobacteriaceae: Epidemiology and prevention
-
Gupta N, Limbago BM, Patel JB, Kallen AJ. 2011. Carbapenem-resistant Enterobacteriaceae: epidemiology and prevention. Clin Infect Dis 53:60-67 http://dx.doi.org/10.1093/cid/cir202
-
(2011)
Clin Infect Dis
, vol.53
, pp. 60-67
-
-
Gupta, N.1
Limbago, B.M.2
Patel, J.B.3
Kallen, A.J.4
-
14
-
-
71249134038
-
Characterization of a new metallo-lactamase gene, blaNDM-1, and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India
-
Yong D, Toleman MA, Giske CG, Cho HS, Sundman K, Lee K, Walsh TR. 2009. Characterization of a new metallo-lactamase gene, blaNDM-1, and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India. Antimicrob Agents Chemother 53:5046-5054. http://dx.doi.org/10.1128/AAC.00774-09.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 5046-5054
-
-
Yong, D.1
Toleman, M.A.2
Giske, C.G.3
Cho, H.S.4
Sundman, K.5
Lee, K.6
Walsh, T.R.7
-
15
-
-
77955917495
-
Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: A molecular, biological, and epidemiological study
-
Kumarasamy KK, Toleman MA, Walsh TR, Bagaria J, Butt F, Balakrishnan R, Chaudhary U, Doumith M, Giske CG, Irfan S, Krish-nan P, Kumar AV, Maharjan S, Mushtaq S, Noorie T, Paterson DL, Pearson A, Perry C, Pike R, Rao B, Ray U, Sarma JB, Sharma M, Sheridan E, Thirunarayan MA, Turton J, Upadhyay S, Warner M, Welfare W, Livermore DM, Woodford N. 2010. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: A molecular, biological, and epidemiological study. Lancet Infect Dis 10:597-602. http://dx.doi.org/10.1016/S1473-3099(10)70143-2.
-
(2010)
Lancet Infect Dis
, vol.10
, pp. 597-602
-
-
Kumarasamy, K.K.1
Toleman, M.A.2
Walsh, T.R.3
Bagaria, J.4
Butt, F.5
Balakrishnan, R.6
Chaudhary, U.7
Doumith, M.8
Giske, C.G.9
Irfan, S.10
Krish-Nan, P.11
Kumar, A.V.12
Maharjan, S.13
Mushtaq, S.14
Noorie, T.15
Paterson, D.L.16
Pearson, A.17
Perry, C.18
Pike, R.19
Rao, B.20
Ray, U.21
Sarma, J.B.22
Sharma, M.23
Sheridan, E.24
Thirunarayan, M.A.25
Turton, J.26
Upadhyay, S.27
Warner, M.28
Welfare, W.29
Livermore, D.M.30
Woodford, N.31
more..
-
16
-
-
84899511797
-
Worldwide dissemination of the NDM-Type carbapenemases in Gram-negative bacteria
-
Dortet L, Poirel L, Nordmann P. 2014. Worldwide dissemination of the NDM-Type carbapenemases in Gram-negative bacteria. Biomed Res Int 2014:249856. http://dx.doi.org/10.1155/2014/249856.
-
(2014)
Biomed Res Int
, pp. 249856
-
-
Dortet, L.1
Poirel, L.2
Nordmann, P.3
-
17
-
-
84949117075
-
A novel New Delhi metallo-lactamase variant, NDM-14, isolated in a Chinese Hospital possesses increased enzymatic activity against carbapenems
-
Zou D, Huang Y, Zhao X, Liu W, Dong D, Li H, Wang X, Huang S, Wei X, Yan X, Yang Z, Tong Y, Huang L, Yuan J. 2015. A novel New Delhi metallo-lactamase variant, NDM-14, isolated in a Chinese Hospital possesses increased enzymatic activity against carbapenems. Antimicrob Agents Chemother 59:2450-2453. http://dx.doi.org/10.1128/AAC.05168-14.
-
(2015)
Antimicrob Agents Chemother
, vol.59
, pp. 2450-2453
-
-
Zou, D.1
Huang, Y.2
Zhao, X.3
Liu, W.4
Dong, D.5
Li, H.6
Wang, X.7
Huang, S.8
Wei, X.9
Yan, X.10
Yang, Z.11
Tong, Y.12
Huang, L.13
Yuan, J.14
-
19
-
-
84898814306
-
Global dissemination of a multidrug resistant
-
Petty NK, Ben Zakour NL, Stanton-Cook M, Skippington E, Totsika M, Forde BM, Phan MD, Gomes Moriel D, Peters KM, Davies M, Rogers BA, Dougan G, Rodriguez-Bano J, Pascual A, Pitout JD, Upton M, Paterson DL, Walsh TR, Schembri MA, Beatson SA. 2014. Global dissemination of a multidrug resistant Escherichia coli clone. Proc Natl Acad Sci U S A 111:5694-5699. http://dx.doi.org/10.1073/pnas.1322678111.
-
(2014)
Escherichia coli Clone
, vol.111
, pp. 5694-5699
-
-
Petty, N.K.1
Ben Zakour, N.L.2
Stanton-Cook, M.3
Skippington, E.4
Totsika, M.5
Forde, B.M.6
Phan, M.D.7
Gomes Moriel, D.8
Peters, K.M.9
Davies, M.10
Rogers, B.A.11
Dougan, G.12
Rodriguez-Bano, J.13
Pascual, A.14
Pitout, J.D.15
Upton, M.16
Paterson, D.L.17
Walsh, T.R.18
Schembri, M.A.19
Beatson, S.A.20
more..
-
20
-
-
84857657364
-
Sequence type ST131 and ST10 complex (ST617) predominant among CTX-M-15-producing Escherichia coli isolates from Nigeria
-
Aibinu I, Odugbemi T, Koenig W, Ghebremedhin B. 2012. Sequence type ST131 and ST10 complex (ST617) predominant among CTX-M-15-producing Escherichia coli isolates from Nigeria. Clin Microbiol Infect 18:E49-E51. http://dx.doi.org/10.1111/j.1469-0691.2011.03730.x.
-
(2012)
Clin Microbiol Infect
, vol.18
, pp. E49-E51
-
-
Aibinu, I.1
Odugbemi, T.2
Koenig, W.3
Ghebremedhin, B.4
-
21
-
-
40749102940
-
Major uropathogenic Escherichia coli strain isolated in the northwest of England identified by multilocus sequence typing
-
Lau SH, Reddy S, Cheesbrough J, Bolton FJ, Willshaw G, Cheasty T, Fox AJ, Upton M. 2008. Major uropathogenic Escherichia coli strain isolated in the northwest of England identified by multilocus sequence typing. J Clin Microbiol 46:1076-1080. http://dx.doi.org/10.1128/JCM.02065-07.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 1076-1080
-
-
Lau, S.H.1
Reddy, S.2
Cheesbrough, J.3
Bolton, F.J.4
Willshaw, G.5
Cheasty, T.6
Fox, A.J.7
Upton, M.8
-
22
-
-
84927689551
-
Extraintestinal pathogenic Escherichia coli (ExPEC) of human and avian origin belonging to sequence type complex 95 (STC95) portray indistinguishable virulence features
-
Nandanwar N, Janssen T, Kuhl M, Ahmed N, Ewers C, Wieler LH. 2014. Extraintestinal pathogenic Escherichia coli (ExPEC) of human and avian origin belonging to sequence type complex 95 (STC95) portray indistinguishable virulence features. Int JMedMicrobiol 304:835-842. http://dx.doi.org/10.1016/j.ijmm.2014.06.009.
-
(2014)
Int JMedMicrobiol
, vol.304
, pp. 835-842
-
-
Nandanwar, N.1
Janssen, T.2
Kuhl, M.3
Ahmed, N.4
Ewers, C.5
Wieler, L.H.6
-
23
-
-
84912099582
-
Genotypic and phenotypic profiles of Escherichia coli isolates belonging to clinical sequence type 131 (ST131), clinical non-ST131, and fecal non-ST131 lineages from India
-
Hussain A, Ranjan A, Nandanwar N, Babbar A, Jadhav S, Ahmed N. 2014. Genotypic and phenotypic profiles of Escherichia coli isolates belonging to clinical sequence type 131 (ST131), clinical non-ST131, and fecal non-ST131 lineages from India. Antimicrob Agents Chemother 58: 7240-7249. http://dx.doi.org/10.1128/AAC.03320-14.
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 7240-7249
-
-
Hussain, A.1
Ranjan, A.2
Nandanwar, N.3
Babbar, A.4
Jadhav, S.5
Ahmed, N.6
-
24
-
-
84942279493
-
Genomic and functional portrait of a highly virulent, CTX-M-15-producing H30-Rx subclone of Escherichia coli sequence type 131
-
Ranjan A, Shaik S, Hussain A, Nandanwar N, Semmler T, Jadhav S, Wieler LH, Ahmed N. 2015. Genomic and functional portrait of a highly virulent, CTX-M-15-producing H30-Rx subclone of Escherichia coli sequence type 131. Antimicrob Agents Chemother 59:6087-6095. http://dx.doi.org/10.1128/AAC.01447-15.
-
(2015)
Antimicrob Agents Chemother
, vol.59
, pp. 6087-6095
-
-
Ranjan, A.1
Shaik, S.2
Hussain, A.3
Nandanwar, N.4
Semmler, T.5
Jadhav, S.6
Wieler, L.H.7
Ahmed, N.8
-
25
-
-
84869216920
-
Multiresistant uropathogenic Escherichia coli from a region in India where urinary tract infections are endemic: Genotypic and phenotypic characteristics of sequence type 131 isolates of the CTX-M-15 extended-spectrum-lactamase-producing lineage
-
Hussain A, Ewers C, Nandanwar N, Guenther S, Jadhav S, Wieler LH, Ahmed N. 2012. Multiresistant uropathogenic Escherichia coli from a region in India where urinary tract infections are endemic: genotypic and phenotypic characteristics of sequence type 131 isolates of the CTX-M-15 extended-spectrum-lactamase-producing lineage. Antimicrob Agents Chemother 56:6358-6365. http://dx.doi.org/10.1128/AAC.01099-12.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 6358-6365
-
-
Hussain, A.1
Ewers, C.2
Nandanwar, N.3
Guenther, S.4
Jadhav, S.5
Wieler, L.H.6
Ahmed, N.7
-
26
-
-
79961163061
-
Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India
-
Avasthi TS, Kumar N, Baddam R, Hussain A, Nandanwar N, Jadhav S, Ahmed N. 2011. Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. J Bacteriol 193:4272-4273. http://dx.doi.org/10.1128/JB.05413-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 4272-4273
-
-
Avasthi, T.S.1
Kumar, N.2
Baddam, R.3
Hussain, A.4
Nandanwar, N.5
Jadhav, S.6
Ahmed, N.7
-
27
-
-
84994870211
-
Population structure and molecular epidemiology of human clinical multidrug resistant (MDR Escherichia coli strains from Pune, India
-
Nandanwar N, Hussain A, Ranjan A, Jadhav S, Ahmed N. 2016. Population structure and molecular epidemiology of human clinical multidrug resistant (MDR) Escherichia coli strains from Pune, India. Int J Infect Dis 45 (Suppl 1):343-344.
-
(2016)
Int J Infect Dis
, vol.45
, pp. 343-344
-
-
Nandanwar, N.1
Hussain, A.2
Ranjan, A.3
Jadhav, S.4
Ahmed, N.5
-
28
-
-
80051678537
-
Molecular characterization of blaNDM-1 in an Acinetobacter baumannii strain isolated in Germany in 2007
-
Pfeifer Y, Wilharm G, Zander E, Wichelhaus TA, Gottig S, Hunfeld KP, Seifert H, Witte W, Higgins PG. 2011. Molecular characterization of blaNDM-1 in an Acinetobacter baumannii strain isolated in Germany in 2007. J Antimicrob Chemother 66:1998-2001. http://dx.doi.org/10.1093/jac/dkr256.
-
(2011)
J Antimicrob Chemother
, vol.66
, pp. 1998-2001
-
-
Pfeifer, Y.1
Wilharm, G.2
Zander, E.3
Wichelhaus, T.A.4
Gottig, S.5
Hunfeld, K.P.6
Seifert, H.7
Witte, W.8
Higgins, P.G.9
-
29
-
-
84877998169
-
New Delhi metallo-beta-lactamase-producing Enterobacteriaceae, United States
-
Rasheed JK, Kitchel B, Zhu W, Anderson KF, Clark NC, Ferraro MJ, Savard P, Humphries RM, Kallen AJ, Limbago BM. 2013. New Delhi metallo-beta-lactamase-producing Enterobacteriaceae, United States. Emerg Infect Dis 19:870-878. http://dx.doi.org/10.3201/eid1906.121515.
-
(2013)
Emerg Infect Dis
, vol.19
, pp. 870-878
-
-
Rasheed, J.K.1
Kitchel, B.2
Zhu, W.3
Anderson, K.F.4
Clark, N.C.5
Ferraro, M.J.6
Savard, P.7
Humphries, R.M.8
Kallen, A.J.9
Limbago, B.M.10
-
30
-
-
84890330527
-
MEGA6: Molecular evolutionary genetics analysis version 6.0
-
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30: 2725-2729. http://dx.doi.org/10.1093/molbev/mst197.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
31
-
-
67650122815
-
Emergence of carbapenem-non-susceptible extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates at the university hospital of Tubingen, Germany
-
Grobner S, Linke D, Schutz W, Fladerer C, Madlung J, Autenrieth IB, Witte W, Pfeifer Y. 2009. Emergence of carbapenem-non-susceptible extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates at the university hospital of Tubingen, Germany. J Med Microbiol 58:912-922. http://dx.doi.org/10.1099/jmm.0.005850-0.
-
(2009)
J Med Microbiol
, vol.58
, pp. 912-922
-
-
Grobner, S.1
Linke, D.2
Schutz, W.3
Fladerer, C.4
Madlung, J.5
Autenrieth, I.B.6
Witte, W.7
Pfeifer, Y.8
-
32
-
-
33746932128
-
Qnr prevalence in ceftazidime-resistant Enterobacteriaceae isolates from the United States
-
Robicsek A, Strahilevitz J, Sahm DF, Jacoby GA, Hooper DC. 2006. qnr prevalence in ceftazidime-resistant Enterobacteriaceae isolates from the United States. Antimicrob Agents Chemother 50:2872-2874. http://dx.doi.org/10.1128/AAC.01647-05.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 2872-2874
-
-
Robicsek, A.1
Strahilevitz, J.2
Sahm, D.F.3
Jacoby, G.A.4
Hooper, D.C.5
-
33
-
-
33750597138
-
Prevalence in the United States of aac 6=)-lb-cr encoding a ciprofloxacinmodifying enzyme
-
Park CH, Robicsek A, Jacoby GA, Sahm D, Hooper DC. 2006. Prevalence in the United States of aac(6=)-lb-cr encoding a ciprofloxacinmodifying enzyme. Antimicrob Agents Chemother 50:3953-3955. http://dx.doi.org/10.1128/AAC.00915-06.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 3953-3955
-
-
Park, C.H.1
Robicsek, A.2
Jacoby, G.A.3
Sahm, D.4
Hooper, D.C.5
-
34
-
-
0032515790
-
Quinolone resistance from a transferable plasmid
-
Martinez-Martinez L, Pascual A, Jacoby GA. 1998. Quinolone resistance from a transferable plasmid. Lancet 351:797-799. http://dx.doi.org/10.1016/S0140-6736(97)07322-4.
-
(1998)
Lancet
, vol.351
, pp. 797-799
-
-
Martinez-Martinez, L.1
Pascual, A.2
Jacoby, G.A.3
-
35
-
-
27744453560
-
Identification of plasmids by PCR-based replicon typing
-
Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL, Threlfall EJ. 2005. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 63:219-228. http://dx.doi.org/10.1016/j.mimet.2005.03.018.
-
(2005)
J Microbiol Methods
, vol.63
, pp. 219-228
-
-
Carattoli, A.1
Bertini, A.2
Villa, L.3
Falbo, V.4
Hopkins, K.L.5
Threlfall, E.J.6
-
36
-
-
0026323259
-
Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
-
Versalovic J, Koeuth T, Lupski JR. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19:6823-6831. http://dx.doi.org/10.1093/nar/19.24.6823.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6823-6831
-
-
Versalovic, J.1
Koeuth, T.2
Lupski, J.R.3
-
37
-
-
84856468953
-
NGS QC toolkit: A toolkit for quality control of next generation sequencing data
-
Patel RK, Jain M. 2012. NGS QC toolkit: A toolkit for quality control of next generation sequencing data. PLoS One 7:e30619. http://dx.doi.org/10.1371/journal.pone.0030619.
-
(2012)
PLoS One
, vol.7
, pp. e30619
-
-
Patel, R.K.1
Jain, M.2
-
38
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to singlecell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: A new genome assembly algorithm and its applications to singlecell sequencing. J Comput Biol 19:455-477. http://dx.doi.org/10.1089/cmb.2012.0021.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
39
-
-
84973908600
-
Contig-layout-Authenticator (CLA): A combinatorial approach to ordering and scaffolding of bacterial contigs for comparative genomics and molecular epidemiology
-
Shaik S, Kumar N, Lankapalli AK, Tiwari SK, Baddam R, Ahmed N. 2016. Contig-layout-Authenticator (CLA): A combinatorial approach to ordering and scaffolding of bacterial contigs for comparative genomics and molecular epidemiology. PLoS One 11:e0155459. http://dx.doi.org/10.1371/journal.pone.0155459.
-
(2016)
PLoS One
, vol.11
, pp. e0155459
-
-
Shaik, S.1
Kumar, N.2
Lankapalli, A.K.3
Tiwari, S.K.4
Baddam, R.5
Ahmed, N.6
-
40
-
-
84891804612
-
The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R. 2014. The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res 42:D206-D214. http://dx.doi.org/10.1093/nar/gkt1226.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
Edwards, R.A.7
Gerdes, S.8
Parrello, B.9
Shukla, M.10
Vonstein, V.11
Wattam, A.R.12
Xia, F.13
Stevens, R.14
-
41
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945. http://dx.doi.org/10.1093/bioinformatics/16.10.944.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
42
-
-
0035875343
-
GeneMarkS: A selftraining method for prediction of gene starts in microbial genomes Implications for finding sequence motifs in regulatory regions
-
Besemer J, Lomsadze A, Borodovsky M. 2001. GeneMarkS: A selftraining method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 29:2607-2618.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2607-2618
-
-
Besemer, J.1
Lomsadze, A.2
Borodovsky, M.3
-
43
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
44
-
-
13444249995
-
VFDB: A reference database for bacterial virulence factors
-
Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, Jin Q. 2005. VFDB: A reference database for bacterial virulence factors. Nucleic Acids Res 33: D325-D328.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D325-D328
-
-
Chen, L.1
Yang, J.2
Yu, J.3
Yao, Z.4
Sun, L.5
Shen, Y.6
Jin, Q.7
-
45
-
-
84879017399
-
The comprehensive antibiotic resistance database
-
McArthur AG, Waglechner N, Nizam F, Yan A, Azad MA, Baylay AJ, Bhullar K, Canova MJ, De Pascale G, Ejim L, Kalan L, King AM, Koteva K, Morar M, Mulvey MR, O'Brien JS, Pawlowski AC, Piddock LJ, Spanogiannopoulos P, Sutherland AD, Tang I, Taylor PL, Thaker M, Wang W, Yan M, Yu T, Wright GD. 2013. The comprehensive antibiotic resistance database. Antimicrob Agents Chemother 57:3348-3357. http://dx.doi.org/10.1128/AAC.00419-13.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 3348-3357
-
-
McArthur, A.G.1
Waglechner, N.2
Nizam, F.3
Yan, A.4
Azad, M.A.5
Baylay, A.J.6
Bhullar, K.7
Canova, M.J.8
De Pascale, G.9
Ejim, L.10
Kalan, L.11
King, A.M.12
Koteva, K.13
Morar, M.14
Mulvey, M.R.15
O'Brien, J.S.16
Pawlowski, A.C.17
Piddock, L.J.18
Spanogiannopoulos, P.19
Sutherland, A.D.20
Tang, I.21
Taylor, P.L.22
Thaker, M.23
Wang, W.24
Yan, M.25
Yu, T.26
Wright, G.D.27
more..
-
46
-
-
33644873699
-
ISfinder: The reference centre for bacterial insertion sequences
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. 2006. ISfinder: The reference centre for bacterial insertion sequences. Nucleic Acids Res 34:D32-D36. http://dx.doi.org/10.1093/nar/gkj014.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D32-D36
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
47
-
-
79959979274
-
PHAST: A fast phage search tool
-
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. 2011. PHAST: A fast phage search tool. Nucleic Acids Res 39:W347-W352. http://dx.doi.org/10.1093/nar/gkr485.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W347-W352
-
-
Zhou, Y.1
Liang, Y.2
Lynch, K.H.3
Dennis, J.J.4
Wishart, D.S.5
-
48
-
-
84869178812
-
Roles of iron acquisition systems in virulence of extraintestinal pathogenic Escherichia coli: Salmochelin and aerobactin contribute more to virulence than heme in a chicken infection model
-
Gao Q, Wang X, Xu H, Xu Y, Ling J, Zhang D, Gao S, Liu X. 2012. Roles of iron acquisition systems in virulence of extraintestinal pathogenic Escherichia coli: salmochelin and aerobactin contribute more to virulence than heme in a chicken infection model. BMC Microbiol 12:143. http://dx.doi.org/10.1186/1471-2180-12-143.
-
(2012)
BMC Microbiol
, vol.12
, pp. 143
-
-
Gao, Q.1
Wang, X.2
Xu, H.3
Xu, Y.4
Ling, J.5
Zhang, D.6
Gao, S.7
Liu, X.8
-
49
-
-
0038076041
-
Medical and economic impact of extraintestinal infections due to Escherichia coli: Focus on an increasingly important endemic problem
-
Russo TA, Johnson JR. 2003. Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem. Microbes Infect 5:449-456. http://dx.doi.org/10.1016/S1286-4579(03)00049-2.
-
(2003)
Microbes Infect
, vol.5
, pp. 449-456
-
-
Russo, T.A.1
Johnson, J.R.2
-
50
-
-
79953056293
-
Virulence characteristics and genetic affinities of multiple drug resistant uropathogenic Escherichia coli from a semi-urban locality in India
-
Jadhav S, Hussain A, Devi S, Kumar A, Parveen S, Gandham N, Wieler LH, Ewers C, Ahmed N. 2011. Virulence characteristics and genetic affinities of multiple drug resistant uropathogenic Escherichia coli from a semi-urban locality in India. PLoS One 6:e18063. http://dx.doi.org/10.1371/journal.pone.0018063.
-
(2011)
PLoS One
, vol.6
, pp. e18063
-
-
Jadhav, S.1
Hussain, A.2
Devi, S.3
Kumar, A.4
Parveen, S.5
Gandham, N.6
Wieler, L.H.7
Ewers, C.8
Ahmed, N.9
-
51
-
-
84883190584
-
Incidence of blaNDM-1 gene in Escherichia coli isolates at a tertiary care referral hospital in Northeast India
-
Bora A, Ahmed GU, Hazarika NK, Prasad KN, Shukla SK, Randhawa V, Sarma JB. 2013. Incidence of blaNDM-1 gene in Escherichia coli isolates at a tertiary care referral hospital in Northeast India. Indian J Med Microbiol 31:250-256. http://dx.doi.org/10.4103/0255-0857.115628.
-
(2013)
Indian J Med Microbiol
, vol.31
, pp. 250-256
-
-
Bora, A.1
Ahmed, G.U.2
Hazarika, N.K.3
Prasad, K.N.4
Shukla, S.K.5
Randhawa, V.6
Sarma, J.B.7
-
52
-
-
84902533737
-
Prevalence and molecular characterisation of New Delhi metallo-beta-lactamases NDM-1, NDM-5, NDM-6 and NDM-7 in multidrug-resistant Enterobacteriaceae from India
-
Rahman M, Shukla SK, Prasad KN, Ovejero CM, Pati BK, Tripathi A, Singh A, Srivastava AK, Gonzalez-Zorn B. 2014. Prevalence and molecular characterisation of New Delhi metallo-beta-lactamases NDM-1, NDM-5, NDM-6 and NDM-7 in multidrug-resistant Enterobacteriaceae from India. Int J Antimicrob Agents 44:30-37. http://dx.doi.org/10.1016/j.ijantimicag.2014.03.003.
-
(2014)
Int J Antimicrob Agents
, vol.44
, pp. 30-37
-
-
Rahman, M.1
Shukla, S.K.2
Prasad, K.N.3
Ovejero, C.M.4
Pati, B.K.5
Tripathi, A.6
Singh, A.7
Srivastava, A.K.8
Gonzalez-Zorn, B.9
-
53
-
-
84978328513
-
Treatment options for carbapenem-resistant Enterobacteriaceae infections
-
ofv050
-
Morrill HJ, Pogue JM, Kaye KS, LaPlante KL. 2015. Treatment options for carbapenem-resistant Enterobacteriaceae infections. Open Forum Infect Dis 2:ofv050. http://dx.doi.org/10.1093/ofid/ofv050.
-
(2015)
Open Forum Infect Dis
, vol.2
-
-
Morrill, H.J.1
Pogue, J.M.2
Kaye, K.S.3
LaPlante, K.L.4
-
54
-
-
84947019736
-
The combination of colistin and fosfomycin is synergistic against NDM-1-producing Enterobacteriaceae in vitro pharmacokinetic/pharmacodynamic model experiments
-
Albur MS, Noel A, Bowker K, MacGowan A. 2015. The combination of colistin and fosfomycin is synergistic against NDM-1-producing Enterobacteriaceae in in vitro pharmacokinetic/pharmacodynamic model experiments. Int J Antimicrob Agents 46:560-567. http://dx.doi.org/10.1016/j.ijantimicag.2015.07.019.
-
(2015)
Int J Antimicrob Agents
, vol.46
, pp. 560-567
-
-
Albur, M.S.1
Noel, A.2
Bowker, K.3
MacGowan, A.4
-
55
-
-
0038170395
-
Horizontal gene transfer-emerging multidrug resistance in hospital bacteria
-
Dzidic S, Bedekovic V. 2003. Horizontal gene transfer-emerging multidrug resistance in hospital bacteria. Acta Pharmacol Sin 24:519-526.
-
(2003)
Acta Pharmacol Sin
, vol.24
, pp. 519-526
-
-
Dzidic, S.1
Bedekovic, V.2
-
56
-
-
84929405737
-
Extensively drug-resistant New Delhi metallo-beta-lactamase-encoding bacteria in the environment, Dhaka, Bangladesh 2012
-
Toleman MA, Bugert JJ, Nizam SA. 2015. Extensively drug-resistant New Delhi metallo-beta-lactamase-encoding bacteria in the environment, Dhaka, Bangladesh, 2012. Emerg Infect Dis 21:1027-1030. http://dx.doi.org/10.3201/eid2106.141578.
-
(2015)
Emerg Infect Dis
, vol.21
, pp. 1027-1030
-
-
Toleman, M.A.1
Bugert, J.J.2
Nizam, S.A.3
-
57
-
-
84882628151
-
Nosocomial transmission of NDM-1-producing Escherichia coli ST101 in a Korean hospital
-
Yoo JS, Kim HM, Koo HS, Yang JW, Yoo JI, Kim HS, Park HK, Lee YS. 2013. Nosocomial transmission of NDM-1-producing Escherichia coli ST101 in a Korean hospital. J Antimicrob Chemother 68:2170-2172. http://dx.doi.org/10.1093/jac/dkt126.
-
(2013)
J Antimicrob Chemother
, vol.68
, pp. 2170-2172
-
-
Yoo, J.S.1
Kim, H.M.2
Koo, H.S.3
Yang, J.W.4
Yoo, J.I.5
Kim, H.S.6
Park, H.K.7
Lee, Y.S.8
-
58
-
-
84953212947
-
First report of New Delhi metallobeta-lactamase 5 (NDM-5)-producing Escherichia coli from blood cultures of three leukemia patients
-
Zhang LP, Xue WC, Meng DY. 2016. First report of New Delhi metallobeta-lactamase 5 (NDM-5)-producing Escherichia coli from blood cultures of three leukemia patients. Int J Infect Dis 42:45-46. http://dx.doi.org/10.1016/j.ijid.2015.10.006.
-
(2016)
Int J Infect Dis
, vol.42
, pp. 45-46
-
-
Zhang, L.P.1
Xue, W.C.2
Meng, D.Y.3
-
59
-
-
84912090384
-
BlaNDM-5 carried by an IncX3 plasmid in Escherichia coli sequence type 167
-
Yang P, Xie Y, Feng P, Zong Z. 2014. blaNDM-5 carried by an IncX3 plasmid in Escherichia coli sequence type 167. Antimicrob Agents Chemother 58:7548-7552. http://dx.doi.org/10.1128/AAC.03911-14.
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 7548-7552
-
-
Yang, P.1
Xie, Y.2
Feng, P.3
Zong, Z.4
-
60
-
-
80051681522
-
Phylogenetic diversity of Escherichia coli strains producing NDM-Type carbapenemases
-
Mushtaq S, Irfan S, Sarma JB, Doumith M, Pike R, Pitout J, Livermore DM, Woodford N. 2011. Phylogenetic diversity of Escherichia coli strains producing NDM-Type carbapenemases. J Antimicrob Chemother 66: 2002-2005. http://dx.doi.org/10.1093/jac/dkr226.
-
(2011)
J Antimicrob Chemother
, vol.66
, pp. 2002-2005
-
-
Mushtaq, S.1
Irfan, S.2
Sarma, J.B.3
Doumith, M.4
Pike, R.5
Pitout, J.6
Livermore, D.M.7
Woodford, N.8
-
61
-
-
80051815004
-
First description of an Escherichia coli strain producing NDM-1 carbapenemase in Spain
-
Sole M, Pitart C, Roca I, Fabrega A, Salvador P, Munoz L, Oliveira I, Gascon J, Marco F, Vila J. 2011. First description of an Escherichia coli strain producing NDM-1 carbapenemase in Spain. Antimicrob Agents Chemother 55:4402-4404. http://dx.doi.org/10.1128/AAC.00642-11.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 4402-4404
-
-
Sole, M.1
Pitart, C.2
Roca, I.3
Fabrega, A.4
Salvador, P.5
Munoz, L.6
Oliveira, I.7
Gascon, J.8
Marco, F.9
Vila, J.10
-
62
-
-
84920895563
-
Complete sequencing of an IncX3 plasmid carrying blaNDM-5 allele reveals an early stage in the dissemination of the blaNDM gene
-
Krishnaraju M, Kamatchi C, Jha AK, Devasena N, Vennila R, Sumathi G, Vaidyanathan R. 2015. Complete sequencing of an IncX3 plasmid carrying blaNDM-5 allele reveals an early stage in the dissemination of the blaNDM gene. Indian J Med Microbiol 33:30-38. http://dx.doi.org/10.4103/0255-0857.148373.
-
(2015)
Indian J Med Microbiol
, vol.33
, pp. 30-38
-
-
Krishnaraju, M.1
Kamatchi, C.2
Jha, A.K.3
Devasena, N.4
Vennila, R.5
Sumathi, G.6
Vaidyanathan, R.7
-
63
-
-
84875180450
-
Virulence potential and adherence properties of Escherichia coli that produce CTX-M and NDM beta-lactamases
-
Peirano G, Mulvey GL, Armstrong GD, Pitout JD. 2013. Virulence potential and adherence properties of Escherichia coli that produce CTX-M and NDM beta-lactamases. J Med Microbiol 62:525-530. http://dx.doi.org/10.1099/jmm.0.048983-0.
-
(2013)
J Med Microbiol
, vol.62
, pp. 525-530
-
-
Peirano, G.1
Mulvey, G.L.2
Armstrong, G.D.3
Pitout, J.D.4
|