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Volumn 114, Issue 45, 2017, Pages E9722-E9729

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa

Author keywords

Alternative splicing; NAC transcription factors; Populus trichocarpa; Reciprocal cross regulation; Wood formation

Indexed keywords

COMPLEMENTARY DNA; PLANT DNA; PLANT PROTEIN; PLANT RNA; PTR SECONDARY WALL ASSOCIATED NAC DOMAIN 1 A2 PROTEIN; PTR SECONDARY WALL ASSOCIATED NAC DOMAIN A2 IR PROTEIN; PTR SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN1; PTR VASCULAR RELATED NAC DOMAIN 6 C1 PROTEIN; PTR VASCULAR RELATED NAC DOMAIN PROTEIN 6; PTR VASCULAR RELATED NAC DOMAIN PROTEIN 6 C1 IR PROTEIN; REGULATOR PROTEIN; SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; VASCULAR RELATED NAC DOMAIN PROTEIN; NUCLEAR PROTEIN; RECOMBINANT PROTEIN; TRANSCRIPTOME;

EID: 85033482319     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1714422114     Document Type: Article
Times cited : (64)

References (52)
  • 1
    • 11844257894 scopus 로고
    • Renewable resources for the production of fuels and chemicals
    • Sarkanen KV (1976) Renewable resources for the production of fuels and chemicals. Science 191:773–776.
    • (1976) Science , vol.191 , pp. 773-776
    • Sarkanen, K.V.1
  • 2
    • 0035984698 scopus 로고    scopus 로고
    • From rags to riches
    • Chiang VL (2002) From rags to riches. Nat Biotechnol 20:557–558.
    • (2002) Nat Biotechnol , vol.20 , pp. 557-558
    • Chiang, V.L.1
  • 3
    • 79960918743 scopus 로고    scopus 로고
    • A NAC domain protein family contributing to the regulation of wood formation in poplar
    • Ohtani M, et al. (2011) A NAC domain protein family contributing to the regulation of wood formation in poplar. Plant J 67:499–512.
    • (2011) Plant J , vol.67 , pp. 499-512
    • Ohtani, M.1
  • 4
    • 84891552533 scopus 로고    scopus 로고
    • SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa
    • Lin YC, et al. (2013) SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa. Plant Cell 25:4324–4341.
    • (2013) Plant Cell , vol.25 , pp. 4324-4341
    • Lin, Y.C.1
  • 5
    • 84934873423 scopus 로고    scopus 로고
    • NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants
    • Nakano Y, Yamaguchi M, Endo H, Rejab NA, Ohtani M (2015) NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants. Front Plant Sci 6:288.
    • (2015) Front Plant Sci , vol.6 , pp. 288
    • Nakano, Y.1    Yamaguchi, M.2    Endo, H.3    Rejab, N.A.4    Ohtani, M.5
  • 6
    • 84871688539 scopus 로고    scopus 로고
    • Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa
    • Li Q, et al. (2012) Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa. Proc Natl Acad Sci USA 109:14699–14704.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 14699-14704
    • Li, Q.1
  • 7
    • 84893495381 scopus 로고    scopus 로고
    • Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species
    • Zhao Y, Sun J, Xu P, Zhang R, Li L (2014) Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Plant Physiol 164:765–776.
    • (2014) Plant Physiol , vol.164 , pp. 765-776
    • Zhao, Y.1    Sun, J.2    Xu, P.3    Zhang, R.4    Li, L.5
  • 8
    • 84936792182 scopus 로고    scopus 로고
    • Phosphorylation is an on/off switch for 5-hydroxyconifer-aldehyde O-methyltransferase activity in poplar monolignol biosynthesis
    • Wang JP, et al. (2015) Phosphorylation is an on/off switch for 5-hydroxyconifer-aldehyde O-methyltransferase activity in poplar monolignol biosynthesis. Proc Natl Acad Sci USA 112:8481–8486.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 8481-8486
    • Wang, J.P.1
  • 9
    • 84899153608 scopus 로고    scopus 로고
    • Systems biology of lignin biosynthesis in Populus trichocarpa: Heteromeric 4-coumaric acid:coenzyme A ligase protein complex formation, regulation, and numerical modeling
    • Chen HC, et al. (2014) Systems biology of lignin biosynthesis in Populus trichocarpa: Heteromeric 4-coumaric acid:coenzyme A ligase protein complex formation, regulation, and numerical modeling. Plant Cell 26:876–893.
    • (2014) Plant Cell , vol.26 , pp. 876-893
    • Chen, H.C.1
  • 10
    • 23944449143 scopus 로고    scopus 로고
    • Transcription switches for protoxylem and metaxylem vessel formation
    • Kubo M, et al. (2005) Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev 19:1855–1860.
    • (2005) Genes Dev , vol.19 , pp. 1855-1860
    • Kubo, M.1
  • 11
    • 33845736876 scopus 로고    scopus 로고
    • SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis
    • Zhong R, Demura T, Ye ZH (2006) SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis. Plant Cell 18: 3158–3170.
    • (2006) Plant Cell , vol.18 , pp. 3158-3170
    • Zhong, R.1    Demura, T.2    Ye, Z.H.3
  • 12
    • 34250191497 scopus 로고    scopus 로고
    • ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana
    • Ko JH, Yang SH, Park AH, Lerouxel O, Han KH (2007) ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. Plant J 50:1035–1048.
    • (2007) Plant J , vol.50 , pp. 1035-1048
    • Ko, J.H.1    Yang, S.H.2    Park, A.H.3    Lerouxel, O.4    Han, K.H.5
  • 13
    • 77954291222 scopus 로고    scopus 로고
    • VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system
    • Yamaguchi M, et al. (2010) VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system. Plant Physiol 153:906–914.
    • (2010) Plant Physiol , vol.153 , pp. 906-914
    • Yamaguchi, M.1
  • 14
    • 79955852269 scopus 로고    scopus 로고
    • VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation
    • Yamaguchi M, et al. (2011) VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant J 66:579–590.
    • (2011) Plant J , vol.66 , pp. 579-590
    • Yamaguchi, M.1
  • 15
    • 84871940127 scopus 로고    scopus 로고
    • MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis
    • Kim WC, et al. (2013) MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis. Plant J 73:26–36.
    • (2013) Plant J , vol.73 , pp. 26-36
    • Kim, W.C.1
  • 16
    • 84904556122 scopus 로고    scopus 로고
    • Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis
    • Kim WC, Kim JY, Ko JH, Kang H, Han KH (2014) Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis. Plant Mol Biol 85:589–599.
    • (2014) Plant Mol Biol , vol.85 , pp. 589-599
    • Kim, W.C.1    Kim, J.Y.2    Ko, J.H.3    Kang, H.4    Han, K.H.5
  • 17
    • 78649527157 scopus 로고    scopus 로고
    • Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation
    • Ohashi-Ito K, Oda Y, Fukuda H (2010) Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation. Plant Cell 22:3461–3473.
    • (2010) Plant Cell , vol.22 , pp. 3461-3473
    • Ohashi-Ito, K.1    Oda, Y.2    Fukuda, H.3
  • 18
    • 0038364114 scopus 로고    scopus 로고
    • Transcriptional repression in eukaryotes: Repressors and repression mechanisms
    • Gaston K, Jayaraman P-S (2003) Transcriptional repression in eukaryotes: Repressors and repression mechanisms. Cell Mol Life Sci 60:721–741.
    • (2003) Cell Mol Life Sci , vol.60 , pp. 721-741
    • Gaston, K.1    Jayaraman, P.-S.2
  • 19
    • 80053333872 scopus 로고    scopus 로고
    • Competitive inhibition of transcription factors by small interfering peptides
    • Seo PJ, Hong SY, Kim SG, Park CM (2011b) Competitive inhibition of transcription factors by small interfering peptides. Trends Plant Sci 16:541–549.
    • (2011) Trends Plant Sci , vol.16 , pp. 541-549
    • Seo, P.J.1    Hong, S.Y.2    Kim, S.G.3    Park, C.M.4
  • 21
    • 78650873392 scopus 로고    scopus 로고
    • Regulation of protein function by ‘microProteins’
    • Staudt AC, Wenkel S (2011) Regulation of protein function by ‘microProteins’. EMBO Rep 12:35–42.
    • (2011) EMBO Rep , vol.12 , pp. 35-42
    • Staudt, A.C.1    Wenkel, S.2
  • 23
    • 79955887707 scopus 로고    scopus 로고
    • Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism
    • Seo PJ, Kim MJ, Ryu JY, Jeong EY, Park CM (2011a) Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism. Nat Commun 2:303.
    • (2011) Nat Commun , vol.2 , pp. 303
    • Seo, P.J.1    Kim, M.J.2    Ryu, J.Y.3    Jeong, E.Y.4    Park, C.M.5
  • 24
    • 84864440018 scopus 로고    scopus 로고
    • A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis
    • Seo PJ, et al. (2012) A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis. Plant Cell 24: 2427–2442.
    • (2012) Plant Cell , vol.24 , pp. 2427-2442
    • Seo, P.J.1
  • 25
    • 84907026654 scopus 로고    scopus 로고
    • A simple improved-throughput xylem protoplast system for studying wood formation
    • Lin YC, et al. (2014) A simple improved-throughput xylem protoplast system for studying wood formation. Nat Protoc 9:2194–2205.
    • (2014) Nat Protoc , vol.9 , pp. 2194-2205
    • Lin, Y.C.1
  • 26
    • 4544294517 scopus 로고    scopus 로고
    • Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
    • Ernst HA, Olsen AN, Larsen S, Lo Leggio L (2004) Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. EMBO Rep 5:297–303.
    • (2004) EMBO Rep , vol.5 , pp. 297-303
    • Ernst, H.A.1    Olsen, A.N.2    Larsen, S.3    Lo Leggio, L.4
  • 27
    • 83555172324 scopus 로고    scopus 로고
    • NAC domain function and transcriptional control of a secondary cell wall master switch
    • Wang H, Zhao Q, Chen F, Wang M, Dixon RA (2011) NAC domain function and transcriptional control of a secondary cell wall master switch. Plant J 68:1104–1114.
    • (2011) Plant J , vol.68 , pp. 1104-1114
    • Wang, H.1    Zhao, Q.2    Chen, F.3    Wang, M.4    Dixon, R.A.5
  • 28
    • 79551707422 scopus 로고    scopus 로고
    • Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice
    • Ambavaram MMR, Krishnan A, Trijatmiko KR, Pereira A (2011) Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice. Plant Physiol 155: 916–931.
    • (2011) Plant Physiol , vol.155 , pp. 916-931
    • Ambavaram, M.M.R.1    Krishnan, A.2    Trijatmiko, K.R.3    Pereira, A.4
  • 29
    • 84945466973 scopus 로고    scopus 로고
    • Genomewide identification, classification and analysis of NAC type gene family in maize
    • Peng X, et al. (2015) Genomewide identification, classification and analysis of NAC type gene family in maize. J Genet 94:377–390.
    • (2015) J Genet , vol.94 , pp. 377-390
    • Peng, X.1
  • 30
    • 84928400794 scopus 로고    scopus 로고
    • In vitro xylem vessel elements formation from banana embryogenic cells and expression analysis of vessel development-related genes
    • Negi S, Tak H, Ganapathi TR (2015) In vitro xylem vessel elements formation from banana embryogenic cells and expression analysis of vessel development-related genes. Plant Biotechnol Rep 9:47–54.
    • (2015) Plant Biotechnol Rep , vol.9 , pp. 47-54
    • Negi, S.1    Tak, H.2    Ganapathi, T.R.3
  • 31
    • 84923378375 scopus 로고    scopus 로고
    • A NAC transcription factor, EjNAC1, affects lignification of loquat fruit by regulating lignin
    • Xu Q, et al. (2015) A NAC transcription factor, EjNAC1, affects lignification of loquat fruit by regulating lignin. Postharvest Biol Technol 102:25–31.
    • (2015) Postharvest Biol Technol , vol.102 , pp. 25-31
    • Xu, Q.1
  • 32
    • 84951788802 scopus 로고    scopus 로고
    • The role of alternative splicing in the control of immune homeostasis and cellular differentiation
    • Yabas M, Elliott H, Hoyne GF (2015) The role of alternative splicing in the control of immune homeostasis and cellular differentiation. Int J Mol Sci 17:E3.
    • (2015) Int J Mol Sci , vol.17 , pp. E3
    • Yabas, M.1    Elliott, H.2    Hoyne, G.F.3
  • 33
    • 84935870586 scopus 로고    scopus 로고
    • Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis
    • Bazin J, Bailey-Serres J (2015) Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis. Front Plant Sci 6: 400.
    • (2015) Front Plant Sci , vol.6 , pp. 400
    • Bazin, J.1    Bailey-Serres, J.2
  • 35
    • 84925752409 scopus 로고    scopus 로고
    • Alternative splicing in plants: Directing traffic at the crossroads of adaptation and environmental stress
    • Filichkin S, Priest HD, Megraw M, Mockler TC (2015) Alternative splicing in plants: Directing traffic at the crossroads of adaptation and environmental stress. Curr Opin Plant Biol 24:125–135.
    • (2015) Curr Opin Plant Biol , vol.24 , pp. 125-135
    • Filichkin, S.1    Priest, H.D.2    Megraw, M.3    Mockler, T.C.4
  • 36
    • 4944241489 scopus 로고    scopus 로고
    • Intron retention is a major phenomenon in alternative splicing in Arabidopsis
    • Ner-Gaon H, et al. (2004) Intron retention is a major phenomenon in alternative splicing in Arabidopsis. Plant J 39:877–885.
    • (2004) Plant J , vol.39 , pp. 877-885
    • Ner-Gaon, H.1
  • 37
    • 84878360308 scopus 로고    scopus 로고
    • Alternative splicing of transcription factors in plant responses to low temperature stress: Mechanisms and functions
    • Seo PJ, Park MJ, Park CM (2013) Alternative splicing of transcription factors in plant responses to low temperature stress: Mechanisms and functions. Planta 237: 1415–1424.
    • (2013) Planta , vol.237 , pp. 1415-1424
    • Seo, P.J.1    Park, M.J.2    Park, C.M.3
  • 38
    • 84871435525 scopus 로고    scopus 로고
    • Function of alternative splicing
    • Kelemen O, et al. (2013) Function of alternative splicing. Gene 514:1–30.
    • (2013) Gene , vol.514 , pp. 1-30
    • Kelemen, O.1
  • 40
    • 0035001937 scopus 로고    scopus 로고
    • The basic helix-loop-helix protein family: Comparative genomics and phylogenetic analysis
    • Ledent V, Vervoort M (2001) The basic helix-loop-helix protein family: Comparative genomics and phylogenetic analysis. Genome Res 11:754–770.
    • (2001) Genome Res , vol.11 , pp. 754-770
    • Ledent, V.1    Vervoort, M.2
  • 41
    • 85009291513 scopus 로고    scopus 로고
    • Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa
    • Shi R, et al. (2017) Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa. Planta 245:927–938.
    • (2017) Planta , vol.245 , pp. 927-938
    • Shi, R.1
  • 42
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-seq
    • Trapnell C, Pachter L, Salzberg SL (2009) TopHat: Discovering splice junctions with RNA-seq. Bioinformatics 25:1105–1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 43
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson MD, Oshlack A (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 11:R25.
    • (2010) Genome Biol , vol.11 , pp. R25
    • Robinson, M.D.1    Oshlack, A.2
  • 44
    • 84891810676 scopus 로고    scopus 로고
    • PlantTFDB 3.0: A portal for the functional and evolutionary study of plant transcription factors
    • Jin J, Zhang H, Kong L, Gao G, Luo J (2014) PlantTFDB 3.0: A portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res 42: D1182–D1187.
    • (2014) Nucleic Acids Res , vol.42 , pp. D1182-D1187
    • Jin, J.1    Zhang, H.2    Kong, L.3    Gao, G.4    Luo, J.5
  • 45
    • 84929912922 scopus 로고    scopus 로고
    • Illumine Accessed October 13, 2017
    • Illumine (2010) TruSeq RNA Sample Preparation Guide. Available at https://support.illumina.com/downloads/truseq_rna_sample_preparation_guide_15008136.html. Accessed October 13, 2017.
    • (2010) TruSeq RNA Sample Preparation Guide
  • 46
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan GA, et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596–1604.
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1
  • 47
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 48
    • 84875634162 scopus 로고    scopus 로고
    • Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir H, Robinson JT, Mesirov JP (2013) Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration. Brief Bioinform 14: 178–192.
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 49
    • 84907021263 scopus 로고    scopus 로고
    • A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue
    • Li W, et al. (2014) A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue. Nat Protoc 9:2180–2193.
    • (2014) Nat Protoc , vol.9 , pp. 2180-2193
    • Li, W.1
  • 50
    • 78649862688 scopus 로고    scopus 로고
    • Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis
    • Zhong R, Lee C, Ye ZH (2010) Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087–1103.
    • (2010) Mol Plant , vol.3 , pp. 1087-1103
    • Zhong, R.1    Lee, C.2    Ye, Z.H.3
  • 51
    • 34447099171 scopus 로고    scopus 로고
    • Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
    • Yoo SD, Cho YH, Sheen J (2007) Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis. Nat Protoc 2:1565–1572.
    • (2007) Nat Protoc , vol.2 , pp. 1565-1572
    • Yoo, S.D.1    Cho, Y.H.2    Sheen, J.3
  • 52
    • 54349105689 scopus 로고    scopus 로고
    • Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta
    • Waadt R, et al. (2008) Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. Plant J 56:505–516.
    • (2008) Plant J , vol.56 , pp. 505-516
    • Waadt, R.1


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