Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors

EMBO Reports

Volumn 5, Issue 3, 2004, Pages 297-303

  Ernst, Heidi A ^a   Olsen, Addie Nina ^b   Skriver, Karen ^b   Larsen, Sine ^a,c   Lo Leggio, Leila ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

Author keywords

Abscisic acid response; Arabidopsis thaliana; Crystal structure; DNA binding; Domain; Transcription factor

Indexed keywords

ARABIDOPSIS PROTEIN; DIMER; DNA; HELIX LOOP HELIX PROTEIN; REGULATOR PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ANAC; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; APICAL MERISTEM; ARTICLE; BETA SHEET; CONTROLLED STUDY; DNA BINDING; FLOWER DEVELOPMENT; GENETIC CONSERVATION; HORMONAL REGULATION; NONHUMAN; PLANT DEFENSE; PLANT DEVELOPMENT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DATA BANK; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; TRANSCRIPTION REGULATION; X RAY CRYSTALLOGRAPHY;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 4544294517     PISSN: 1469221X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.embor.7400093     Document Type: Article

References (30)

1. Aida M, Ishida T, Fukaki H, Fujisawa H, Tasaka M (1997) Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell 9: 841-857
2. Allen MD, Yamasaki K, Ohme-Takagi M, Tateno M, Suzuki M (1998) A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J 17: 5484-5496
3. Brünger AT et al (1998) Crystallography & NMR System: a new software suite for macromolecular structure determination. Acta Crystallogr D 54: 905-921
4. Cohen SX, Moulin M, Hashemolhosseini S, Kilian K, Wegner M, Müller CW (2003) Structure of the GCM domain-DNA complex: a DNA-binding domain with a novel fold and mode of target site recognition. EMBO J 22: 1835-1845
5. Collinge M, Boller T (2001) Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding. Plant Mol Biol 46: 521-529
6. Duval M, Hsieh T-F, Kim SY, Thomas TL (2002) Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily. Plant Mol Biol 50: 237-248
7. Gilbert D, Westhead D, Viksna J, Thornton J (2001) A computer system to perform structure comparison using TOPS representations of protein structure. Comput Chem 26: 23-30
8. Greve K, La Cour T, Jensen MK, Poulsen FM, Skriver K (2003) Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/1/CUC2) proteins: RING-H2 molecular specificity and cellular localization. Biochem J 371: 97-108
9. Holm L, Sander C (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233: 123-138
10. Hoth S, Morgante M, Sanchez J-P, Hanafey MK, Tingey SV, Chua N-H (2002) Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. J Cell Sci 115: 4891-4900
11. Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119
12. Kraulis PJ (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24: 946-950
13. Luscombe NM, Austin SF, Berman HM, Thornton JM (2000) An overview of the structures of protein-DNA complexes. Genome Biol 1, reviews001
14. Merrit EA, Bacon DJ (1997) Raster3D photorealistic molecular graphics. Methods Enzymol 277: 505-524
15. Müller CW (2001) Transcription factors: global and detailed views. Curr Opin Struct Biol 11: 26-32
16. Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53: 240-255
17. Nicholls A, Sharp KA, Honig B (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11: 281-296
18. Olsen AN, Ernst HA, Lo Leggio L, Johansson E, Larsen S, Skriver K (2004) Preliminary crystallographic analysis of the NAC domain of ANAC, a member of the plant-specific NAC transcription factor family. Acta Crystallogr D 60: 112-115
19. Perrakis A, Morris R, Lamzin VS (1999) Automated protein model building combined with iterative structure refinement. Nat Struct Biol 6: 458-463
20. Ren T, Qu F, Morris TJ (2000) HRT gene function requires interaction between a NAC protein and viral capsid protein to confer resistance to turnip crinkle virus. Plant Cell 12: 1917-1925
21. Riechmann JL et al (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290: 2105-2110
22. Souer E, van Houwelingen A, Kloos D, Mol J, Koes R (1996) The No Apical Meristem gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries. Cell 85: 159-170
23. Tateno M, Yamasaki K, Amano N, Kakinuma J, Koike H, Allen MD, Suzuki M (1997) DNA recognition by β-sheets. Biopolymers 44: 335-359
24. Terwilliger TC (2000) Maximum-likelihood density modification. Acta Crystallogr D 56: 965-972
25. Terwilliger TC, Berendzen J (1999) Automated MAD and MIR structure solution. Acta Crystallogr D 55: 849-861
26. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
27. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
28. Xie Q, Sanz-Burgos AP, Guo H, García JA, Gutiérrez C (1999) GRAB proteins, novel members of the NAC domain family, isolated by their interaction with a geminivirus protein. Plant Mol Biol 39: 647-656
29. Xie Q, Frugis G, Colgan D, Chua N-H (2000) Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev 14: 3024-3036
30. Xie Q, Goo H-S, Dallman G, Fang S, Weissman AM, Chua N-H (2002) SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature 419: 167-170