Variations in oral microbiota associated with oral cancer

Scientific Reports

Volumn 7, Issue 1, 2017, Pages

  Zhao, Hongsen ^a   Chu, Min ^a   Huang, Zhengwei ^a   Yang, Xi ^a   Ran, Shujun ^a   Hu, Bin ^a   Zhang, Chenping ^a   Liang, Jingping ^a  

^a SHANGHAI JIAO TONG UNIVERSITY SCHOOL OF MEDICINE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; CLASSIFICATION; CLINICAL TRIAL; FEMALE; GROWTH, DEVELOPMENT AND AGING; HUMAN; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; MICROFLORA; MIDDLE AGED; MOUTH TUMOR; PATHOLOGY; SQUAMOUS CELL CARCINOMA;

BACTERIA; CARCINOMA, SQUAMOUS CELL; FEMALE; HUMANS; MALE; MICROBIOTA; MIDDLE AGED; MOUTH NEOPLASMS;

EID: 85029620332     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-017-11779-9     Document Type: Article

References (56)

1. Kudo, Y. et al. Oral environment and cancer. Genes Environ 38, 13 (2016).
2. Turnbaugh, P. J. et al. The human microbiome project: exploring the microbial part of ourselves in a changing world. Nature 449, 804-810 (2007).
3. Flint, H. J., Duncan, S. H., Scott, K. P. & Louis, P. Interactions and competition within the microbial community of the human colon: links between diet and health. Environ Microbiol 9, 1101-1111 (2007).
4. Burcelin, R. Gut microbiota and immune crosstalk in metabolic disease. Mol Metab 5, 771-781 (2016).
5. Allali, I. et al. Gut microbiome compositional and functional differences between tumor and non-tumor adjacent tissues from cohorts from the US and Spain. Gut Microbes 6, 161-172 (2015).
6. Dewhirst, F. E. et al. The human oral microbiome. J Bacteriol 192, 5002-5017 (2010).
7. Gholizadeh, P. et al. Role of oral microbiome on oral cancers, a review. Biomed Pharmacother 84, 552-558 (2016).
8. Darveau, R. P. Periodontitis: A polymicrobial disruption of host homeostasis. Nat Rev Microbiol 8, 481-490 (2010).
9. Chen, H. et al. A Filifactor alocis-centered co-occurrence group associates with periodontitis across different oral habitats. Sci Rep 5, 9053 (2015).
10. Ng, J. H., Iyer, N. G., Tan, M. H. & Edgren, G. Changing epidemiology of oral squamous cell carcinoma of the tongue: A global study. Head Neck 39, 297-304 (2017).
11. Perera, M., Al-Hebshi, N. N., Speicher, D. J., Perera, I. & Johnson, N. W. Emerging role of bacteria in oral carcinogenesis: A review with special reference to perio-pathogenic bacteria. J Oral Microbiol 8, 32762 (2016).
12. Aas, J. A., Paster, B. J., Stokes, L. N., Olsen, I. & Dewhirst, F. E. Defining the normal bacterial flora of the oral cavity. J Clin Microbiol 43, 5721-5732 (2005).
13. Bultman, S. J. Emerging roles of the microbiome in cancer. Carcinogenesis 35, 249-255 (2014).
14. Nagy, K. N., Sonkodi, I., Szoke, I., Nagy, E. & Newman, H. N. The microflora associated with human oral carcinomas. Oral Oncol 34, 304-308 (1998).
15. Hooper, S. J. et al. Viable bacteria present within oral squamous cell carcinoma tissue. J Clin Microbiol 44, 1719-1725 (2006).
16. Hooper, S. J. et al. A molecular analysis of the bacteria present within oral squamous cell carcinoma. J Med Microbiol 56, 1651-1659 (2007).
17. Pushalkar, S. et al. Comparison of oral microbiota in tumor and non-tumor tissues of patients with oral squamous cell carcinoma. BMC Microbiol 12, 144 (2012).
18. Bebek, G. et al. Microbiomic subprofiles and MDR1 promoter methylation in head and neck squamous cell carcinoma. Hum Mol Genet 21, 1557-1565 (2012).
19. Wang, H. et al. Microbiomic differences in tumor and paired-normal tissue in head and neck squamous cell carcinomas. 9, 14 (2017).
20. Pushalkar, S. et al. Microbial diversity in saliva of oral squamous cell carcinoma. FEMS Immunol Med Microbiol 61, 269-277 (2011).
21. Schmidt, B. L. et al. Changes in abundance of oral microbiota associated with oral cancer. PLoS One 9, e98741 (2014).
22. Guerrero-Preston, R. et al. 16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, Human Papilloma Virus infection and surgical treatment. Oncotarget (2016).
23. Al-Hebshi, N. N., Nasher, A. T., Idris, A. M. & Chen, T. Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: Application to oral carcinoma samples. J Oral Microbiol 7, 28934 (2015).
24. Al-Hebshi, N. N. et al. Inflammatory bacteriome featuring Fusobacterium nucleatum and Pseudomonas aeruginosa identified in association with oral squamous cell carcinoma. 7, 1834 (2017).
25. Khatoon, J., Rai, R. P. & Prasad, K. N. Role of Helicobacter pylori in gastric cancer: Updates. World J Gastrointest Oncol 8, 147-158 (2016).
26. Plummer, M. et al. Global burden of cancers attributable to infections in 2012: A synthetic analysis. Lancet Glob Health 4, e609-616 (2016).
27. Liu, L. et al. Comparison of next-generation sequencing systems. J Biomed Biotechnol 2012, 251364 (2012).
28. Reuter, J. A., Spacek, D. V. & Snyder, M. P. High-throughput sequencing technologies. Mol Cell 58, 586-597 (2015).
29. Sun, D.-L., Jiang, X., Wu, Q. L. & Zhou, N.-Y. Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity. Applied and Environmental Microbiology 79, 5962-5969 (2013).
30. Hu, X., Zhang, Q., Hua, H. & Chen, F. Changes in the salivary microbiota of oral leukoplakia and oral cancer. Oral Oncol 56, e6-8 (2016).
31. Li, Y. et al. Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients. Isme j 8, 1879-1891 (2014).
32. Goncalves, C. et al. Association of three putative periodontal pathogens with chronic periodontitis in Brazilian subjects. J Appl Oral Sci 24, 181-185 (2016).
33. Binder Gallimidi, A. et al. Periodontal pathogens Porphyromonas gingivalis and Fusobacterium nucleatum promote tumor progression in an oral-specific chemical carcinogenesis model. Oncotarget 6, 22613-22623 (2015).
34. Ogrendik, M. Oral bacteria in pancreatic cancer: mutagenesis of the p53 tumour suppressor gene. Int J Clin Exp Pathol 8, 11835-11836 (2015).
35. Toprak, N. U. et al. A possible role of Bacteroides fragilis enterotoxin in the aetiology of colorectal cancer. Clin Microbiol Infect 12, 782-786 (2006).
36. Yan, X. et al. Discovery and validation of potential bacterial biomarkers for lung cancer. Am J Cancer Res 5, 3111-3122 (2015).
37. Mager, D. L. et al. The salivary microbiota as a diagnostic indicator of oral cancer: A descriptive, non-randomized study of cancerfree and oral squamous cell carcinoma subjects. J Transl Med 3, 27 (2005).
38. Nagpal, D., Prakash, S., Bhat, K. G. & Singh, G. Detection and comparison of Selenomonas sputigena in subgingival biofilms in chronic and aggressive periodontitis patients. J Indian Soc Periodontol 20, 286-291 (2016).
39. Yu, J. et al. Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer. Gut 66, 70-78 (2017).
40. Faust, K. & Raes, J. Microbial interactions: from networks to models. Nat Rev Microbiol 10, 538-550 (2012).
41. Nobbs, A. H., Jenkinson, H. F. & Jakubovics, N. S. Stick to your gums: mechanisms of oral microbial adherence. J Dent Res 90, 1271-1278 (2011).
42. Abed, J. et al. Fap2 Mediates Fusobacterium nucleatum Colorectal Adenocarcinoma Enrichment by Binding to Tumor-Expressed Gal-GalNAc. Cell Host Microbe 20, 215-225 (2016).
43. Wang, J. et al. Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease. Sci Rep 3, 1843 (2013).
44. Tezal, M. et al. Chronic periodontitis and the incidence of head and neck squamous cell carcinoma. Cancer Epidemiol Biomarkers Prev 18, 2406-2412 (2009).
45. Hooper, S. J., Wilson, M. J. & Crean, S. J. Exploring the link between microorganisms and oral cancer: A systematic review of the literature. Head Neck 31, 1228-1239 (2009).
46. Zhang, G., Wei, L., Chang, C. C., Zhang, Y. & Wei, D. Molecular Biological Methods in Environmental Engineering. Water Environ Res 88, 930-953 (2016).
47. Xiao, C., Ran, S., Huang, Z. & Liang, J. Bacterial Diversity and Community Structure of Supragingival Plaques in Adults with Dental Health or Caries Revealed by 16S Pyrosequencing. Front Microbiol 7, 1145 (2016).
48. Magoc, T. & Salzberg, S. L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957-2963 (2011).
49. Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7, 335-336 (2010).
50. Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75, 7537-7541 (2009).
51. Warton, D. I., Wright, S. T. & Wang, Y. Distance-based multivariate analyses confound location and dispersion effects. Methods in Ecology and Evolution 3, 89-101 (2012).
52. Segata, N. et al. Metagenomic biomarker discovery and explanation. Genome Biol 12, R60 (2011).
53. Deng, Y. et al. Molecular ecological network analyses. BMC Bioinformatics 13, 113 (2012).
54. Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P. L. & Ideker, T. Cytoscape 2. 8: new features for data integration and network visualization. Bioinformatics 27, 431-432 (2011).
55. Mar, J. C., Matigian, N. A., Quackenbush, J. & Wells, C. A. Attract: A method for identifying core pathways that define cellular phenotypes. PLoS One 6, e25445 (2011).
56. Langille, M. G. et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol 31, 814-821 (2013).