Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: Application to oral carcinoma samples

Journal of Oral Microbiology

Volumn 7, Issue 1, 2015, Pages

  Al Hebshi, Nezar Noor ^a   Nasher, Akram Thabet ^b   Idris, Ali Mohamed ^a   Chen, Tsute ^c  

^a JAZAN UNIVERSITY   (Saudi Arabia)

^b SANA A UNIVERSITY   (Yemen)

^c FORSYTH INSTITUTE   (United States)

Author keywords

Bacteria; Cancer; Next generation sequencing; OSCC; Pyrosequencing; Taxonomy

Indexed keywords

DNA; RNA 16S;

ACTINOBACTERIA; ADULT; AGGREGATIBACTER SEGNIS; ANALYTICAL EQUIPMENT; ARTICLE; BACTERIUM ISOLATION; BACTEROIDES FRAGILIS; BACTEROIDETES; CHIMERA; CLASSIFICATION; DNA DETERMINATION; DNA SEQUENCE; FEMALE; FIRMICUTES; FUSOBACTERIA; FUSOBACTERIUM; FUSOBACTERIUM NUCLEATUM; FUSOBACTERIUM PERIODONTIUM; GENE LIBRARY; GENETIC ALGORITHM; GENETIC DATABASE; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; MALE; MIDDLE AGED; MOUTH CARCINOMA; NEISSERIA; NEISSERIA FLAVA; NEISSERIA FLAVESCENS; NEISSERIA SUBFLAVA; NEXT GENERATION SEQUENCING; NONHUMAN; PILOT STUDY; PREVOTELLA; PREVOTELLA ORIS; PROTEOBACTERIA; RETROSPECTIVE STUDY; SEQUENCE ALIGNMENT; STREPTOCOCCUS MITIS; TAXONOMY;

EID: 84948141518     PISSN: None     EISSN: 20002297     Source Type: Journal    
DOI: 10.3402/jom.v7.28934     Document Type: Article

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